TCONS_00072765-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00072765-protein
Unique Name	TCONS_00072765-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1604

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00072765-protein ID=TCONS_00072765-protein|Name=TCONS_00072765-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1604bp
MSKKAQRTKGNAKPSSSSRAANFLNQEGKAGFIGFSGLQGNNLGYVPQVK
GDEEEISGDLQMLMRKMTKKDTVTKLKATQEFTELCKVKDNEAIGKILSF
WPRIYHKLSHDFDHRVREATQQVHYQLVTKAGKKLAPHLKLIIVDWLMSH
FDNYIPSAAIAKSAFDQAFQEKKRKDVFNFCKSEIFEAVSNQILNESPDT
LSDPKVVPVEEREAKFTRYISSSFHSMSLLLKNLPENDETTKSHFVNLLS
QKKFWKFVKHKSPMIRTSFYTFITVGCQNGDSLFTEYLSQLCPAVLTHLD
EQDSSVVKPMWDAVLLCLLKYNDCWTHVNSRKAVFPGLWKLLKNCGYDNV
QFVYPNFLPFITNIPKEVSGDGLGFYNEFFTNFTEGLHSKEGISQKDADI
IIKSLMECIRFLIVKRADETQLVEYISNEQLRPLIHLMFSKDEEPKIWYR
AFITEMKSLLSFLAAQSSNTQTESSEYFKSVEQKLWSIVTDVIVDQNTST
FRYIHSSSFNTLNVLFNCFCTEINDEKSDNVVLLEDKFNGNLFQFLQTII
IKPILPILDKENYIRKYFVKMVIHASSKSLLVYTLNEFGCNGDFKEAETI
SVVQCFAEKMVKPFIEKDFDIVFVKTLVEIACLLTKDDKWSYLSFLLKDF
FTDATLKSHFFLELTHNKDIDIQSWWLTRSIQEEVEILCTNEKLAQTDAC
WVLCRFNIKKLKDNPLLVKFSDSVLTLMDKVFGQPDSSLILHNVFECFNE
LAISHIDVTDSFRKMLYSILKTSSTDLAIPSKKPLKNGMTKIARSSDEVS
SKFVKDLVDQIYSWTKELDVQDLCRSVYEMISTLEKDENISKLCGEITVA
VLTKEKNLDDPSTHNFCTLLVSQLLENSKDLHFDQQISPSLLDLVVQLLC
NMNEMGSIDDMLDQLMVKEALYKDFFNKLIQRSIETDYHDQLSYVLTKFQ
DNAKLTEDILDQTMQLASEDTSSTSLRSRKVLASIVSFNYDVSSVRAMVE
MYTDSFYATVEKKDISGVTGDLIVLTSALKRWYHFISQQQADNEDEPSSD
HHLKVLEILTLLRSAGECLNLSSLELNELTDHTEALRVAVVDLFIVSMTM
SSVQFSQDHWDFILCTLVSWLKNCEDEEDFTMVKKRSLFATKSLELFYMV
ASLFSPISDDAIDSSPSVGLCDVTFSSLGDNNQLKTEWDEFFGPTVNASV
LVIFKKSLESGGLQHEDELTKVICACCKFLQEVNNESIEELTSMIQNGSW
CYKLAGFQLLSKNITKLEEMCFDLEQDENHEEQRSFPKDLLAIMEVNRDT
TVNSLTNQCASIIEPANEIEDTESRGGKTSLLAYLLSWQLILQIFQTSSL
DQRAKLANFLHRGRHVTDLATCLFCIMPKQTENKAIDTRVYDSSFKEIQK
IGIKLLINAMQCIPALLRHWFKNNINRNETIHIDKFVSSVVSPHLLRNEF
RRLDNAFKTFDNMVVKTRPGAREIVAVYSIEEISMELVVKLSLNHPLTPV
VVDCGKRIGVSNALWRQWMLQLTTFLSFQNGTILDGLTLWKRNVDKRFEG
VEECMICFSIIHGTNYSLPTIGCKTCKKKFHPACLYKWFSTSGKSTCPLC
RNTF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_045175	XLOC_045175	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00072765	TCONS_00072765	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011016	Znf_RING-CH
IPR011989	ARM-like
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING
IPR016024	ARM-type_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0008270	zinc ion binding
GO:0005488	binding

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0008270	zinc ion binding

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 1553..1601 e-value: 6.8E-4 score: 17.2
IPR011989	Armadillo-like helical	GENE3D	1.25.10.10		coord: 45..817 e-value: 4.0E-18 score: 64.5
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 1548..1604 e-value: 2.2E-9 score: 36.6
IPR001841	Zinc finger, RING-type	CDD	cd00162	RING	coord: 1553..1604 e-value: 3.12098E-5 score: 42.4328
IPR016024	Armadillo-type fold	SUPERFAMILY	48371	ARM repeat	coord: 44..156 coord: 213..438
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 1553..1603

Blast

[Close]

BLAST of TCONS_00072765-protein vs. Swiss-Prot (Human)
Match: LTN1 (E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1 SV=6)

HSP 1 Score: 368.622 bits (945), Expect = 3.544e-104
Identity = 190/501 (37.92%), Postives = 297/501 (59.28%), Query Frame = 0

Query:    2 SKKAQRTKGNAKPSSSSRAANFLNQEGK--AGFIGFSGLQGNNLGYVPQVKGDEE---EISGDLQMLMRKMTKKDTVTKLKATQEFTELCKVKDNEAIGKILSFWPRIYHKLSHDFDHRVREATQQVHYQLVTKAGKKLAPHLKLIIVDWLMSHFDNYIPSAAIAKSAFDQAFQEKKRKDVFNFCKSEIFEAVSNQILNESPDTLSDPKVVPVEEREAKFTRYISSSFHSMSLLLKNLPEND-ETTKSHFVNLLSQKKFWKFVKHKSPMIRTSFYTFITVGCQNGDSLFTEYLSQLCPAVLTHLDEQDSSVVKPMWDAVLLCLLKYNDCWTHVNSRKAVFPGLWKLLKNCGYDNVQFVYPNFLPFITNIPKEVSGDGLGFYNEFFTNFTEGLHS-KEGISQKDADIIIKSLMECIRFLIVKRADETQLVEYISNEQLRPLIHLMFSKDEEPKIWYRAFITEMKSLLSFLAAQSSNTQTESSEY-FKSVEQKLWSIVTDVIV 494
             K  QRTKGN +PS+S RAA  L +E     GFIGF G   ++LGYVP ++G EE    +  D +M++RK++KKD  TKLKA QEF  +C  +D E +  +L +WPRI+ K+S D D RVREATQQ   +L+ K  K+LAP+LK ++  WLM+  D Y P+A  AK AF+ AF   K+ +   FCK EI   + + ++ E+PDTLSDP+ VP EEREAKF R ++ S  ++  LL  LP+N+ ++ +  F +LLSQ KFWK+ KH  P IR++++  ++  CQ    L  E  S++ P+VL  +D+ D  V   +W+AVL  L    DCW HVN++K+VFP L  +++  G      +YP  LPFI+ +P+ ++   L F+  F T+   GL + +   S  ++  +I +  EC+RF++ +   E ++ + + N+QL P I  +    ++P + +      +   LS   A++   + E + +  ++V    W  ++++ V
Sbjct:    3 GKNKQRTKGNLRPSNSGRAAELLAKEQGTVPGFIGF-GTSQSDLGYVPAIQGAEEIDSLVDSDFRMVLRKLSKKDVTTKLKAMQEFGTMCTERDTETVKGVLPYWPRIFCKISLDHDRRVREATQQAFEKLILKVKKQLAPYLKSLMGYWLMAQCDTYTPAAFAAKDAFEAAFPPSKQPEAIAFCKDEITSVLQDHLIKETPDTLSDPQTVPEEEREAKFYRVVTCSLLALKRLLCLLPDNELDSLEEKFKSLLSQNKFWKYGKHSVPQIRSAYFELVSALCQRIPQLMKEEASKVSPSVLLSIDDSDPIVCPALWEAVLYTLTTIEDCWLHVNAKKSVFPKLSTVIREGGRGLATVIYPYLLPFISKLPQSITNPKLDFFKNFLTSLVAGLSTERTKTSSLESSAVISAFFECLRFIMQQNLGEEEIEQMLVNDQLIPFIDAVL---KDPGLQHGQLFNHLAETLSSWEAKADTEKDEKTAHNLENVLIHFWERLSEICV 499

HSP 2 Score: 285.804 bits (730), Expect = 8.806e-78
Identity = 183/605 (30.25%), Postives = 303/605 (50.08%), Query Frame = 0

Query: 1055 VLEILTLLRSAGECLNLSSLELNELTDHTEALRVAVVDLFIVSMTMSSVQFSQDHWDFILCTLVSWLKNCEDEEDFTMVKKRSLFATKSLELFYMVASLFSPISDDAIDSSPSVGLCDVTFSSLGDNNQLKTEWDEFFGPTVNASVL-VIFKKSLESGGLQHEDELTKVICACCKFLQEVNNESI--------------EELTSMIQNG-----------SWCYKLAGFQLLSKNITKLEEMCFDLEQ-----DENHEEQRSFPKDLLAIMEVNRDTTVNSLTNQCASI-----IEPANEIEDTESRGGKTSLLAYLLSWQLILQIFQTSSLDQRAKLANFLHRGRHVTDLATCLFCIMPKQT------------ENKAIDTRVYDSSFKE-------IQKIGIKLLINAMQCIPALLRHWFKNNINRNETIHIDKFVSSVVSPHLLRNEFRRLDNAFKTFDNMVVKTRPGAREIVAVYSIEEISMELVVKLSLNHPLTPVVVDCGKRIGVSNALWRQWMLQLTTFLSFQNGTILDGLTLWKRNVDKRFEGVEECMICFSIIHGTNYSLPTIGCKTCKKKFHPACLYKWFSTSGKSTCPLCRNTF 1604
            +L+I+   +   E + L S  L+E +     + + ++    + +   S   ++  WDFI+C++++WL+   + +    +    LFA  S +L   +++ F   + D I + P                 L +EW EFF   +++ +L ++   + E+  +        ++   C+ L  ++ E +                L   +Q             +   ++A + +L K + +L +  +D +      DE  E   S P  L++++ +  D   N L   C  +     I+P +E            +L YLL+W+LIL  F+ +S   RA  + +L + + +  L   LF +MP+              + K   T     S +E       I  +   +    ++ +PA++R W+ ++  R   I +D+F S  VS  L   E   +  + + F+ M VK R   RE++A Y+IE+I +EL+++L  N+PL  ++V+ GKR+GV+   WR WMLQL+T+L+ QNG+I++GL LWK NVDKRFEGVE+CMICFS+IHG NYSLP   C+TCKKKFH ACLYKWF++S KSTCPLCR TF
Sbjct: 1189 ILKIIISWKKEHEDIFLFSCNLSEASPEVLGVNIEIIRFLSLFLKYCSSPLAESEWDFIMCSMLAWLETTSENQALYSIPLVQLFACVSCDLACDLSAFFDSTTLDTIGNLPV---------------NLISEWKEFFSQGIHSLLLPILVTVTGENKDVSETSFQNAMLKPMCETLTYISKEQLLSHKLPARLVADQKTNLPEYLQTLLNTLAPLLLFRARPVQIAVYHMLYKLMPELPQ--YDQDNLKSYGDEEEEPALSPPAALMSLLSIQEDLLENVLG--CIPVGQIVTIKPLSE--------DFCYVLGYLLTWKLILTFFKAASSQLRALYSMYLRKTKSLNKLLYHLFRLMPENPTYAETAVEVPNKDPKTFFTEELQLSIRETTMLPYHIPHLACSVYHMTLKDLPAMVRLWWNSSEKRVFNI-VDRFTSKYVSSVLSFQEISSVQTSTQLFNGMTVKARATTREVMATYTIEDIVIELIIQLPSNYPLGSIIVESGKRVGVAVQQWRNWMLQLSTYLTHQNGSIMEGLALWKNNVDKRFEGVEDCMICFSVIHGFNYSLPKKACRTCKKKFHSACLYKWFTSSNKSTCPLCRETF 1765

The following BLAST results are available for this feature:

BLAST of TCONS_00072765-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00072765-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
LTN1	3.544e-104	37.92	E3 ubiquitin-protein ligase listerin OS=Homo sapie...	[more]

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TCONS_00072765-protein (polypeptide) - C. hemisphaerica