TCONS_00072761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072761
Unique NameTCONS_00072761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length704

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072761 ID=TCONS_00072761|Name=TCONS_00072761|organism=Clytia hemisphaerica|type=transcript|length=704bp
CTTCGAACCGATCTCGAGGTTTCACGTTTGACATTTTCGTTTGGATTCTT
ATATTCTACCACGACACGTCTGACATTTCCATCGTCCCCGGTTTCGATTG
ATTTGATCATCCCGTACGTGTAGGTTTTGCTGATCACTGAATTGACTTTT
GTGAATAAAACAATATCGCCAATTTGAAGGTTACGATCTTGGCGAAACCA
TTTGCTTTGGTGCATTAACTTTGGTACATGACTCAAGAGCCAAGTTTCGA
ACCATGAGTCATAAATTTTTGTATTCATTTTCAGAATCTTTGATGGATCG
TCTGTAACAATGAAATCTCCAACAGGACTACGTTCATTATTTCGTCCAAG
AAGCAATCTGTTTGGCGTTAATAGATCCATGTTTTCAACAGCTGTGACGT
TGCCAACAGCTTGCGGAAGATTGTTGCAGGTGTTGGCAATGATGGCTGTC
AGTGTTTCCCATTGTAGGATTGAAAGTCTTTGATTGTTGAAGGTCCTTTC
CAATGATAGATTGATGTGTTTGATCTTTCTCTCTACCTTTCAATTGACAT
TATGTCCGCCAACTGGACATGTTTGAAATTCCACGCTTCTTTCCTTGAAC
ATCCTTGATTTGACATCAGTGTAGTTCAACTTCATGCCTTTTGTAGCTTT
GACGAGCTGTGATCCTTCGTCGCAGAATACTTTCTTTGGAAAACCATATC
TCGT
Run BLAST on NCBI

protein sequence of TCONS_00072761-protein

>TCONS_00072761-protein ID=TCONS_00072761-protein|Name=TCONS_00072761-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
MDLLTPNRLLLGRNNERSPVGDFIVTDDPSKILKMNTKIYDSWFETWLLS
HVPKLMHQSKWFRQDRNLQIGDIVLFTKVNSVISKTYTYGMIKSIETGDD
GNVRRVVVEYKNPNENVKRETSRSVR
Run BLAST on NCBI

transcript from alignment at scaffold_83:29729..30432

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072761 ID=TCONS_00072761|Name=TCONS_00072761|organism=Clytia hemisphaerica|type=transcript|length=704bp|location=Sequence derived from alignment at scaffold_83:29729..30432 (Clytia hemisphaerica)
ACGAGATATGGTTTTCCAAAGAAAGTATTCTGCGACGAAGGATCACAGCT
CGTCAAAGCTACAAAAGGCATGAAGTTGAACTACACTGATGTCAAATCAA
GGATGTTCAAGGAAAGAAGCGTGGAATTTCAAACATGTCCAGTTGGCGGA
CATAATGTCAATTGAAAGGTAGAGAGAAAGATCAAACACATCAATCTATC
ATTGGAAAGGACCTTCAACAATCAAAGACTTTCAATCCTACAATGGGAAA
CACTGACAGCCATCATTGCCAACACCTGCAACAATCTTCCGCAAGCTGTT
GGCAACGTCACAGCTGTTGAAAACATGGATCTATTAACGCCAAACAGATT
GCTTCTTGGACGAAATAATGAACGTAGTCCTGTTGGAGATTTCATTGTTA
CAGACGATCCATCAAAGATTCTGAAAATGAATACAAAAATTTATGACTCA
TGGTTCGAAACTTGGCTCTTGAGTCATGTACCAAAGTTAATGCACCAAAG
CAAATGGTTTCGCCAAGATCGTAACCTTCAAATTGGCGATATTGTTTTAT
TCACAAAAGTCAATTCAGTGATCAGCAAAACCTACACGTACGGGATGATC
AAATCAATCGAAACCGGGGACGATGGAAATGTCAGACGTGTCGTGGTAGA
ATATAAGAATCCAAACGAAAATGTCAAACGTGAAACCTCGAGATCGGTTC
GAAG

Coding sequence (CDS) from alignment at scaffold_83:29729..30432

>TCONS_00072761 ID=TCONS_00072761|Name=TCONS_00072761|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_83:29729..30432 (Clytia hemisphaerica)
ATGGATCTATTAACGCCAAACAGATTGCTTCTTGGACGAAATAATGAACG
TAGTCCTGTTGGAGATTTCATTGTTACAGACGATCCATCAAAGATTCTGA
AAATGAATACAAAAATTTATGACTCATGGTTCGAAACTTGGCTCTTGAGT
CATGTACCAAAGTTAATGCACCAAAGCAAATGGTTTCGCCAAGATCGTAA
CCTTCAAATTGGCGATATTGTTTTATTCACAAAAGTCAATTCAGTGATCA
GCAAAACCTACACGTACGGGATGATCAAATCAATCGAAACCGGGGACGAT
GGAAATGTCAGACGTGTCGTGGTAGAATATAAGAATCCAAACGAAAATGT
CAAACGTGAAACCTCGAGATCGGTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045171XLOC_045171Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072761-proteinTCONS_00072761-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072761-exon-scaffold_83-1491911889:29729..30432TCONS_00072761-exon-scaffold_83-1491911889:29729..30432Clytia hemisphaericaexon
TCONS_00072761-exon-scaffold_83-1510915933:29729..30432TCONS_00072761-exon-scaffold_83-1510915933:29729..30432Clytia hemisphaericaexon
TCONS_00072761-exon-scaffold_83-1575043694:29729..30432TCONS_00072761-exon-scaffold_83-1575043694:29729..30432Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_83supercontigscaffold_83:29729..30432 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.70124	2.53375	3.0331	2.06855	4.68266	2.4752	1.97946	2.70913	2.00552	2.70954	2.53866	2.3159	1.07138	0.940549	1.69356	1.53962	1.9055	2.06076	2.92588	1.20879	1.24516	1.48178	1.34987	1.85233	2.92415	2.47238	0.726843	1.45083	0.662155	0.444034
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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