TCONS_00072753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072753
Unique NameTCONS_00072753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1206

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=transcript|length=1206bp
taagatATTAGTATAAattctgaatgaaaaaaaatacgcTCTTTTGGTTT
AAATAccatgaaataaataaaaaattgtagaTTTTCTGATTGTctcagaa
atcttttttttggcCACAGACCTGCTGCAAGCCAGGTATGAACGATTCGT
TGTCTAATAATTAACCATAATGCAATTAACTGTTTTCAACTGTATCTGAC
AATCAGTTATTATGAATAGTTGTCATTCTCCCATTTCTTCCTCCTGTCCC
ATGTCTTGAAGGGTGGAAAGCTTTCCAATAAACCTTTTTCATGAACAGTC
TTCTAACGTCACGCTGTAGAAATATATAAATCCATGCATCAATTAGATTG
GATATAGCGTACGAGATAGTCAAAATATAGCTGATATAATCATCGGTATA
GCCATTGATAACTATTAGAATCAAATACACCAAATCTGCACCCACCAcga
atataaaaaaagttaatatAAGTAGGACCGGAATAAAGAATTTAGACCGA
ATAAAGATACGGAAGCTGCtttcttgtttctttttattgCTTCCGTTACT
CATCGCGCGTTTACGGCTGTCTGCGTCTTCCGGGTTGTAATTACACGGCG
ATTGTCTCGTCGTTTTAAATTTACGAAAAATTAACGTATAAGTTACAAAG
GCTAGCGCTACAAAAACGATCTCAATTGATGGGAAAAAGTATTTGAAGAA
ATAAGTAGCCCAGTCAAATTGTTGGATGCCTGAAATACAGCATATACTGA
TTGAGATACACGTTCCTAAAATCCAGGTTCCAATTAAAagtgtttttgtt
ttatcttCATCCCAATACACAGGGTAGcgaatatttaaaacaagctCTAA
CAATCGATCCAGTGTTATAAAAATCATGGATAGATGGAAAATAAATGCTG
TTCCAGTGAACTCGAATATGTAAATATTATCAGCTACCATTCGAGCAGGC
GTATTGTTTTTGCCAACCATTTCGAGAAACATACGAGCTACGCCTAGAAA
GTTCATTACTAACTCGCTACCACTGAGAGACATGAGAAAAAAGTATTgta
ttttcaataaactttgaCTTCTGAGACACCATAGCAAGTATATTCCCACA
GTATGTAAAAGAACGTTAGTTAAACTAAATGTCAATGTGACTATTGGCCA
CAAAGCCATATTTTGTGTGTGAATTATTCTTAagctttattttgttattg
tatccc
Run BLAST on NCBI

protein sequence of TCONS_00072753-protein

>TCONS_00072753-protein ID=TCONS_00072753-protein|Name=TCONS_00072753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MALWPIVTLTFSLTNVLLHTVGIYLLWCLRSQSLLKIQYFFLMSLSGSEL
VMNFLGVARMFLEMVGKNNTPARMVADNIYIFEFTGTAFIFHLSMIFITL
DRLLELVLNIRYPVYWDEDKTKTLLIGTWILGTCISISICCISGIQQFDW
ATYFFKYFFPSIEIVFVALAFVTYTLIFRKFKTTRQSPCNYNPEDADSRK
RAMSNGSNKKKQESSFRIFIRSKFFIPVLLILTFFIFVVGADLVYLILIV
INGYTDDYISYILTISYAISNLIDAWIYIFLQRDVRRLFMKKVYWKAFHP
SRHGTGGRNGRMTTIHNN
Run BLAST on NCBI

transcript from alignment at scaffold_82:508923..510128

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_82:508923..510128 (Clytia hemisphaerica)
gggatacaataacaaaataaagctTAAGAATAATTCACACACAAAATATG GCTTTGTGGCCAATAGTCACATTGACATTTAGTTTAACTAACGTTCTTTT ACATACTGTGGGAATATACTTGCTATGGTGTCTCAGAAGtcaaagtttat tgaaaatacAATACTTTTTTCTCATGTCTCTCAGTGGTAGCGAGTTAGTA ATGAACTTTCTAGGCGTAGCTCGTATGTTTCTCGAAATGGTTGGCAAAAA CAATACGCCTGCTCGAATGGTAGCTGATAATATTTACATATTCGAGTTCA CTGGAACAGCATTTATTTTCCATCTATCCATGATTTTTATAACACTGGAT CGATTGTTAGagcttgttttaaatattcgCTACCCTGTGTATTGGGATGa agataaaacaaaaacactTTTAATTGGAACCTGGATTTTAGGAACGTGTA TCTCAATCAGTATATGCTGTATTTCAGGCATCCAACAATTTGACTGGGCT ACTTATTTCTTCAAATACTTTTTCCCATCAATTGAGATCGTTTTTGTAGC GCTAGCCTTTGTAACTTATACGTTAATTTTTCGTAAATTTAAAACGACGA GACAATCGCCGTGTAATTACAACCCGGAAGACGCAGACAGCCGTAAACGC GCGATGAGTAACGGAAGcaataaaaagaaacaagaaaGCAGCTTCCGTAT CTTTATTCGGTCTAAATTCTTTATTCCGGTCCTACTTatattaacttttt ttatattcgTGGTGGGTGCAGATTTGGTGTATTTGATTCTAATAGTTATC AATGGCTATACCGATGATTATATCAGCTATATTTTGACTATCTCGTACGC TATATCCAATCTAATTGATGCATGGATTTATATATTTCTACAGCGTGACG TTAGAAGACTGTTCATGAAAAAGGTTTATTGGAAAGCTTTCCACCCTTCA AGACATGGGACAGGAGGAAGAAATGGGAGAATGACAACTATTCATAATAA CTGATTGTCAGATACAGTTGAAAACAGTTAATTGCATTATGGTTAATTAT TAGACAACGAATCGTTCATACCTGGCTTGCAGCAGGTCTGTGgccaaaaa aaagatttctgagACAATCAGAAAAtctacaattttttatttatttcatg gTATTTAAACCAAAAGAgcgtattttttttcattcagaatTTATACTAAT atctta

Coding sequence (CDS) from alignment at scaffold_82:508923..510128

>TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_82:508923..510128 (Clytia hemisphaerica)
ATGGCTTTGTGGCCAATAGTCACATTGACATTTAGTTTAACTAACGTTCT
TTTACATACTGTGGGAATATACTTGCTATGGTGTCTCAGAAGtcaaagtt
tattgaaaatacAATACTTTTTTCTCATGTCTCTCAGTGGTAGCGAGTTA
GTAATGAACTTTCTAGGCGTAGCTCGTATGTTTCTCGAAATGGTTGGCAA
AAACAATACGCCTGCTCGAATGGTAGCTGATAATATTTACATATTCGAGT
TCACTGGAACAGCATTTATTTTCCATCTATCCATGATTTTTATAACACTG
GATCGATTGTTAGagcttgttttaaatattcgCTACCCTGTGTATTGGGA
TGaagataaaacaaaaacactTTTAATTGGAACCTGGATTTTAGGAACGT
GTATCTCAATCAGTATATGCTGTATTTCAGGCATCCAACAATTTGACTGG
GCTACTTATTTCTTCAAATACTTTTTCCCATCAATTGAGATCGTTTTTGT
AGCGCTAGCCTTTGTAACTTATACGTTAATTTTTCGTAAATTTAAAACGA
CGAGACAATCGCCGTGTAATTACAACCCGGAAGACGCAGACAGCCGTAAA
CGCGCGATGAGTAACGGAAGcaataaaaagaaacaagaaaGCAGCTTCCG
TATCTTTATTCGGTCTAAATTCTTTATTCCGGTCCTACTTatattaactt
tttttatattcgTGGTGGGTGCAGATTTGGTGTATTTGATTCTAATAGTT
ATCAATGGCTATACCGATGATTATATCAGCTATATTTTGACTATCTCGTA
CGCTATATCCAATCTAATTGATGCATGGATTTATATATTTCTACAGCGTG
ACGTTAGAAGACTGTTCATGAAAAAGGTTTATTGGAAAGCTTTCCACCCT
TCAAGACATGGGACAGGAGGAAGAAATGGGAGAATGACAACTATTCATAA
TAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045163XLOC_045163Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072753-proteinTCONS_00072753-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072753-exon-scaffold_82-1491911889:508923..510128TCONS_00072753-exon-scaffold_82-1491911889:508923..510128Clytia hemisphaericaexon
TCONS_00072753-exon-scaffold_82-1510915933:508923..510128TCONS_00072753-exon-scaffold_82-1510915933:508923..510128Clytia hemisphaericaexon
TCONS_00072753-exon-scaffold_82-1575043694:508923..510128TCONS_00072753-exon-scaffold_82-1575043694:508923..510128Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:508923..510128 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.071169 0.0347005 0 0 0.383901 0.113762 0.0457495 0.0428301 0 0 0 0.0236991 0.73365 0.737325 0.0404121 0.173474 0.186992 0.164281 1.43743 1.425 0.412861 0.0503448 0.489606 0.51931 0.611288 0.647852 0 0 0 0.0804804
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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