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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=transcript|length=1206bp
taagatATTAGTATAAattctgaatgaaaaaaaatacgcTCTTTTGGTTT
AAATAccatgaaataaataaaaaattgtagaTTTTCTGATTGTctcagaa
atcttttttttggcCACAGACCTGCTGCAAGCCAGGTATGAACGATTCGT
TGTCTAATAATTAACCATAATGCAATTAACTGTTTTCAACTGTATCTGAC
AATCAGTTATTATGAATAGTTGTCATTCTCCCATTTCTTCCTCCTGTCCC
ATGTCTTGAAGGGTGGAAAGCTTTCCAATAAACCTTTTTCATGAACAGTC
TTCTAACGTCACGCTGTAGAAATATATAAATCCATGCATCAATTAGATTG
GATATAGCGTACGAGATAGTCAAAATATAGCTGATATAATCATCGGTATA
GCCATTGATAACTATTAGAATCAAATACACCAAATCTGCACCCACCAcga
atataaaaaaagttaatatAAGTAGGACCGGAATAAAGAATTTAGACCGA
ATAAAGATACGGAAGCTGCtttcttgtttctttttattgCTTCCGTTACT
CATCGCGCGTTTACGGCTGTCTGCGTCTTCCGGGTTGTAATTACACGGCG
ATTGTCTCGTCGTTTTAAATTTACGAAAAATTAACGTATAAGTTACAAAG
GCTAGCGCTACAAAAACGATCTCAATTGATGGGAAAAAGTATTTGAAGAA
ATAAGTAGCCCAGTCAAATTGTTGGATGCCTGAAATACAGCATATACTGA
TTGAGATACACGTTCCTAAAATCCAGGTTCCAATTAAAagtgtttttgtt
ttatcttCATCCCAATACACAGGGTAGcgaatatttaaaacaagctCTAA
CAATCGATCCAGTGTTATAAAAATCATGGATAGATGGAAAATAAATGCTG
TTCCAGTGAACTCGAATATGTAAATATTATCAGCTACCATTCGAGCAGGC
GTATTGTTTTTGCCAACCATTTCGAGAAACATACGAGCTACGCCTAGAAA
GTTCATTACTAACTCGCTACCACTGAGAGACATGAGAAAAAAGTATTgta
ttttcaataaactttgaCTTCTGAGACACCATAGCAAGTATATTCCCACA
GTATGTAAAAGAACGTTAGTTAAACTAAATGTCAATGTGACTATTGGCCA
CAAAGCCATATTTTGTGTGTGAATTATTCTTAagctttattttgttattg
tatccc Run BLAST on NCBI protein sequence of TCONS_00072753-protein >TCONS_00072753-protein ID=TCONS_00072753-protein|Name=TCONS_00072753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MALWPIVTLTFSLTNVLLHTVGIYLLWCLRSQSLLKIQYFFLMSLSGSEL
VMNFLGVARMFLEMVGKNNTPARMVADNIYIFEFTGTAFIFHLSMIFITL
DRLLELVLNIRYPVYWDEDKTKTLLIGTWILGTCISISICCISGIQQFDW
ATYFFKYFFPSIEIVFVALAFVTYTLIFRKFKTTRQSPCNYNPEDADSRK
RAMSNGSNKKKQESSFRIFIRSKFFIPVLLILTFFIFVVGADLVYLILIV
INGYTDDYISYILTISYAISNLIDAWIYIFLQRDVRRLFMKKVYWKAFHP
SRHGTGGRNGRMTTIHNN Run BLAST on NCBI transcript from alignment at scaffold_82:508923..510128 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=transcript|length=1206bp|location=Sequence derived from alignment at scaffold_82:508923..510128 (Clytia hemisphaerica)
gggatacaataacaaaataaagctTAAGAATAATTCACACACAAAATATG
GCTTTGTGGCCAATAGTCACATTGACATTTAGTTTAACTAACGTTCTTTT
ACATACTGTGGGAATATACTTGCTATGGTGTCTCAGAAGtcaaagtttat
tgaaaatacAATACTTTTTTCTCATGTCTCTCAGTGGTAGCGAGTTAGTA
ATGAACTTTCTAGGCGTAGCTCGTATGTTTCTCGAAATGGTTGGCAAAAA
CAATACGCCTGCTCGAATGGTAGCTGATAATATTTACATATTCGAGTTCA
CTGGAACAGCATTTATTTTCCATCTATCCATGATTTTTATAACACTGGAT
CGATTGTTAGagcttgttttaaatattcgCTACCCTGTGTATTGGGATGa
agataaaacaaaaacactTTTAATTGGAACCTGGATTTTAGGAACGTGTA
TCTCAATCAGTATATGCTGTATTTCAGGCATCCAACAATTTGACTGGGCT
ACTTATTTCTTCAAATACTTTTTCCCATCAATTGAGATCGTTTTTGTAGC
GCTAGCCTTTGTAACTTATACGTTAATTTTTCGTAAATTTAAAACGACGA
GACAATCGCCGTGTAATTACAACCCGGAAGACGCAGACAGCCGTAAACGC
GCGATGAGTAACGGAAGcaataaaaagaaacaagaaaGCAGCTTCCGTAT
CTTTATTCGGTCTAAATTCTTTATTCCGGTCCTACTTatattaacttttt
ttatattcgTGGTGGGTGCAGATTTGGTGTATTTGATTCTAATAGTTATC
AATGGCTATACCGATGATTATATCAGCTATATTTTGACTATCTCGTACGC
TATATCCAATCTAATTGATGCATGGATTTATATATTTCTACAGCGTGACG
TTAGAAGACTGTTCATGAAAAAGGTTTATTGGAAAGCTTTCCACCCTTCA
AGACATGGGACAGGAGGAAGAAATGGGAGAATGACAACTATTCATAATAA
CTGATTGTCAGATACAGTTGAAAACAGTTAATTGCATTATGGTTAATTAT
TAGACAACGAATCGTTCATACCTGGCTTGCAGCAGGTCTGTGgccaaaaa
aaagatttctgagACAATCAGAAAAtctacaattttttatttatttcatg
gTATTTAAACCAAAAGAgcgtattttttttcattcagaatTTATACTAAT
atctta Coding sequence (CDS) from alignment at scaffold_82:508923..510128 >TCONS_00072753 ID=TCONS_00072753|Name=TCONS_00072753|organism=Clytia hemisphaerica|type=CDS|length=957bp|location=Sequence derived from alignment at scaffold_82:508923..510128 (Clytia hemisphaerica)
ATGGCTTTGTGGCCAATAGTCACATTGACATTTAGTTTAACTAACGTTCT
TTTACATACTGTGGGAATATACTTGCTATGGTGTCTCAGAAGtcaaagtt
tattgaaaatacAATACTTTTTTCTCATGTCTCTCAGTGGTAGCGAGTTA
GTAATGAACTTTCTAGGCGTAGCTCGTATGTTTCTCGAAATGGTTGGCAA
AAACAATACGCCTGCTCGAATGGTAGCTGATAATATTTACATATTCGAGT
TCACTGGAACAGCATTTATTTTCCATCTATCCATGATTTTTATAACACTG
GATCGATTGTTAGagcttgttttaaatattcgCTACCCTGTGTATTGGGA
TGaagataaaacaaaaacactTTTAATTGGAACCTGGATTTTAGGAACGT
GTATCTCAATCAGTATATGCTGTATTTCAGGCATCCAACAATTTGACTGG
GCTACTTATTTCTTCAAATACTTTTTCCCATCAATTGAGATCGTTTTTGT
AGCGCTAGCCTTTGTAACTTATACGTTAATTTTTCGTAAATTTAAAACGA
CGAGACAATCGCCGTGTAATTACAACCCGGAAGACGCAGACAGCCGTAAA
CGCGCGATGAGTAACGGAAGcaataaaaagaaacaagaaaGCAGCTTCCG
TATCTTTATTCGGTCTAAATTCTTTATTCCGGTCCTACTTatattaactt
tttttatattcgTGGTGGGTGCAGATTTGGTGTATTTGATTCTAATAGTT
ATCAATGGCTATACCGATGATTATATCAGCTATATTTTGACTATCTCGTA
CGCTATATCCAATCTAATTGATGCATGGATTTATATATTTCTACAGCGTG
ACGTTAGAAGACTGTTCATGAAAAAGGTTTATTGGAAAGCTTTCCACCCT
TCAAGACATGGGACAGGAGGAAGAAATGGGAGAATGACAACTATTCATAA
TAACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072753-exon-scaffold_82-1491911889:508923..510128 | TCONS_00072753-exon-scaffold_82-1491911889:508923..510128 | Clytia hemisphaerica | exon |
| TCONS_00072753-exon-scaffold_82-1510915933:508923..510128 | TCONS_00072753-exon-scaffold_82-1510915933:508923..510128 | Clytia hemisphaerica | exon |
| TCONS_00072753-exon-scaffold_82-1575043694:508923..510128 | TCONS_00072753-exon-scaffold_82-1575043694:508923..510128 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:508923..510128 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000276 | GPCR_Rhodpsn |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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