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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072746 ID=TCONS_00072746|Name=TCONS_00072746|organism=Clytia hemisphaerica|type=transcript|length=2002bp
TTCGGTTAAATCGACTGTAAACTAAATTTGATGACATCCGACTACAATTC
AAAACACTTCAAAAGTTTTAATCACTGTGTCTGGTGGAACAAGAAGCAAA
CAAAAATCGATCAGTCGATTACCATGAAGGAGTTTCAGGAGAAAGCTTTG
GTTGCCGAGATATAGAGTGCTTTTGATCTCTCTGATCTTCCaattttaca
agcttttcttaAGCTCAATCTTTTAATCGAGATCTTACGGAGATTGAAGA
TGAGTCATTTAGCAGTTGTGGGGATGAGGAGCTAAACATATTGCACAATT
TTTATGGAAATGATGCCACTGACGAATACAATGGGAGAGAAGTAAGATGC
GAGAGGTTGTTATTTGGTCCGTTTGAGGCGTTAATGGTGGAGTTCAATAG
TAGACGTCTAATTGATGCTTTTATTTATAGATAACTGTGTACTTCATTAT
CTTATATAATTGATTAATAAGAGGTTGAGAAAGGATGAAAGTGacaacga
agaagaagaagactgGGGTGACAAGGGGCTatcaaaataacattttcagg
cttcagTCCAAGAGTTTGCATTTAAAGCTCATTGCTTACAAATGAATACC
ATAACTATCATTGCTACGCGAcctaaagtacttttttatCAACCCCGTAC
CTAATGCCTTgtcacttttattttattgactGCGTGGTCAGCCCTGGGAT
TGTCTAGATAAATTGGAAATGATTATGTAACAGTGCTTCGCCCCTTGCCC
GATAATTtttaatattgatttttttcttaaaattcactATTTCGctttta
aattttatctttatctgaatgattttagttttttgagtgTCCCCCTAATA
TCAAAATTCTTCCTACGACACTGTAATGTTGAACGTTCGCGTTTCGTGTT
CAAGATTCTATCTGCTACCATCCTCGTTGTTAAGTTGGTTCTACCATGAG
CGTCatcacggaaaaggaccaaTGAATAGGGTTGGAGGTACGCTAAAAAT
GTCGTTTTTCGGAAGGTGAAATCAAACAAGGCTGTGATTTACAAGTCAAG
CCATTGACGGAGGTCATTGAATTCCTCAAGAACAATTTCTCAGAAAACTT
GAGTTCCGCCTGCGTTACGATCGCGGCCTCCATCCTGCTGTGGAGTTACC
CTAAACTGAAGGAAACCACCCCAAACAAGTTGGCAGTGCCACTTTTATAT
GGGCTACCCAACACTCAAAAGAGCACGGTTGCTGAGTTGGAACTGGCGAT
GGTTAGTGTCAAATCAAAAACCCAAGGTTTGTTTATTAATCATCGATTAG
TTATCatagttaaaaatatttaagattagGTTCTTGAAAATACTTAATTT
ATATGatttattttgtgaaaaatatatCTCAAGATGACGTTGTATATGGT
GACGTATTTAAAGGAAATCATCaataattttaaacttttttcaagaactt
taaAACGTCCTTTTTTACCAAAACTTGTCACCAAGAAAGCTACGAGATTT
TCAAGGTTTCAGCACGCGAGGAAAGAAACAATTTGAAGAGGTGAAATATT
CTTTATTCAATTGAAAATGTACCGCAGGTTGGGTAAAGTATAGTTATAAG
GGAAAACGGCTTCCATACAATCGTGCTTGACAAAAAGAAAGATCGTCAGT
TGTGTTGATTACCTTGAGGGTTTTGACCatggagaaaataaatttttcat
tttgaacacTGAACGTTTTAGTTTTTTCAGTCCTTAAAATTTGGCATAGC
AAAATAATAATTCTTTGAATTATCGTTGGATTTTGGATTATCGAAAGGGG
AAATTGAAAAGATGATGTCAGAACATAATTTCGAAGTACTTCTCATGTTC
TTTTTTGGTATTCTTTTTTCTCGCAGACGTACAAAAGAAAATACACCATT
GTGCAATGCTCGGGCTCAAAAGTGAGTatttaaagttcgattaaaagaAC
TACTGATTGGATTTGATAACGCGAATGAATCTGACATCTGCTTAAAATTT
GT Run BLAST on NCBI transcript from alignment at scaffold_82:231726..233727 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072746 ID=TCONS_00072746|Name=TCONS_00072746|organism=Clytia hemisphaerica|type=transcript|length=2002bp|location=Sequence derived from alignment at scaffold_82:231726..233727 (Clytia hemisphaerica)
ACAAATTTTAAGCAGATGTCAGATTCATTCGCGTTATCAAATCCAATCAG
TAGTtcttttaatcgaactttaaatACTCACTTTTGAGCCCGAGCATTGC
ACAATGGTGTATTTTCTTTTGTACGTCTGCGAGAAAAAAGAATACCAAAA
AAGAACATGAGAAGTACTTCGAAATTATGTTCTGACATCATCTTTTCAAT
TTCCCCTTTCGATAATCCAAAATCCAACGATAATTCAAAGAATTATTATT
TTGCTATGCCAAATTTTAAGGACTGAAAAAACTAAAACGTTCAgtgttca
aaatgaaaaatttattttctccatGGTCAAAACCCTCAAGGTAATCAACA
CAACTGACGATCTTTCTTTTTGTCAAGCACGATTGTATGGAAGCCGTTTT
CCCTTATAACTATACTTTACCCAACCTGCGGTACATTTTCAATTGAATAA
AGAATATTTCACCTCTTCAAATTGTTTCTTTCCTCGCGTGCTGAAACCTT
GAAAATCTCGTAGCTTTCTTGGTGACAAGTTTTGGTAAAAAAGGACGTTt
taaagttcttgaaaaaagtttaaaattattGATGATTTCCTTTAAATACG
TCACCATATACAACGTCATCTTGAGatatatttttcacaaaataaatCAT
ATAAATTAAGTATTTTCAAGAACctaatcttaaatatttttaactatGAT
AACTAATCGATGATTAATAAACAAACCTTGGGTTTTTGATTTGACACTAA
CCATCGCCAGTTCCAACTCAGCAACCGTGCTCTTTTGAGTGTTGGGTAGC
CCATATAAAAGTGGCACTGCCAACTTGTTTGGGGTGGTTTCCTTCAGTTT
AGGGTAACTCCACAGCAGGATGGAGGCCGCGATCGTAACGCAGGCGGAAC
TCAAGTTTTCTGAGAAATTGTTCTTGAGGAATTCAATGACCTCCGTCAAT
GGCTTGACTTGTAAATCACAGCCTTGTTTGATTTCACCTTCCGAAAAACG
ACATTTTTAGCGTACCTCCAACCCTATTCAttggtccttttccgtgatGA
CGCTCATGGTAGAACCAACTTAACAACGAGGATGGTAGCAGATAGAATCT
TGAACACGAAACGCGAACGTTCAACATTACAGTGTCGTAGGAAGAATTTT
GATATTAGGGGGAcactcaaaaaactaaaatcattcagataaagataaaa
tttaaaagCGAAATagtgaattttaagaaaaaaatcaatattaaaAATTA
TCGGGCAAGGGGCGAAGCACTGTTACATAATCATTTCCAATTTATCTAGA
CAATCCCAGGGCTGACCACGCagtcaataaaataaaagtgacAAGGCATT
AGGTACGGGGTTGataaaaaagtactttaggTCGCGTAGCAATGATAGTT
ATGGTATTCATTTGTAAGCAATGAGCTTTAAATGCAAACTCTTGGActga
agcctgaaaatgttattttgatAGCCCCTTGTCACCCcagtcttcttctt
cttcgttgtCACTTTCATCCTTTCTCAACCTCTTATTAATCAATTATATA
AGATAATGAAGTACACAGTTATCTATAAATAAAAGCATCAATTAGACGTC
TACTATTGAACTCCACCATTAACGCCTCAAACGGACCAAATAACAACCTC
TCGCATCTTACTTCTCTCCCATTGTATTCGTCAGTGGCATCATTTCCATA
AAAATTGTGCAATATGTTTAGCTCCTCATCCCCACAACTGCTAAATGACT
CATCTTCAATCTCCGTAAGATCTCGATTAAAAGATTGAGCTtaagaaaag
cttgtaaaattGGAAGATCAGAGAGATCAAAAGCACTCTATATCTCGGCA
ACCAAAGCTTTCTCCTGAAACTCCTTCATGGTAATCGACTGATCGATTTT
TGTTTGCTTCTTGTTCCACCAGACACAGTGATTAAAACTTTTGAAGTGTT
TTGAATTGTAGTCGGATGTCATCAAATTTAGTTTACAGTCGATTTAACCG
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072746-exon-scaffold_82-1491911889:231726..233727 | TCONS_00072746-exon-scaffold_82-1491911889:231726..233727 | Clytia hemisphaerica | exon |
| TCONS_00072746-exon-scaffold_82-1510915933:231726..233727 | TCONS_00072746-exon-scaffold_82-1510915933:231726..233727 | Clytia hemisphaerica | exon |
| TCONS_00072746-exon-scaffold_82-1575043694:231726..233727 | TCONS_00072746-exon-scaffold_82-1575043694:231726..233727 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:231726..233727 . |
Blast
The following BLAST results are available for this feature:
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