TCONS_00072720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072720
Unique NameTCONS_00072720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072720 ID=TCONS_00072720|Name=TCONS_00072720|organism=Clytia hemisphaerica|type=transcript|length=1623bp
agAAAAACCACCATTTCCATCTAAAAAGCAATAAATAATTATGGAGCTGT
ATTTAGTGGCAGGGATTGTTCTCGTGACAATATTAATAGTGTTGCTTTTG
ATTCGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGA
TTCTGGTAAAACTTCATTATTTGGACAGCTTACCACCGGAAAAGAATTGA
AGACCCAAACTTCCATTAttgaaaacaaaggaaagaTCAGTACAACTGCC
ACAAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGCCATGAAAG
AGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGAGGTATTC
TTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCA
GAATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGT
CTCTGTCATGGTCGCCTGCAACAAACAAGATATTCCCACCGCGAAATCAC
ACAACGTTATCAAAAGCCAATTGGAAAAAGAATTaaACAAACTTCGGCAA
ACTCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAA
TGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATC
CAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAG
GGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGAT
ATTATCAGTGGTTTTTAGGgtgttgttatttttatttattagtAATGATA
GTAACATATTAGTCCCCGTGTCAATCAAAAATTCagctttttctaaattt
ctaaaaacgAGAATTTTCAGATTTACATTCCTAAACCAAAAGACAAACTA
TCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAGGATCATGCAAATTTG
TATAATcaattttgttgtgttttttaaaatattagtTTGTTTTAATGCAA
AATGAATATAAATGTATTTTGAAATGCGAAATTTTGCATTTATATGGATC
AACTATTTACAAATGCGTTTACGATTAGAAAATAAATTGCTTTTCTTGTT
TAcccaaaatatttaataaaaaatattttgagcgaAAATTTATGAATGTT
CGATCTTCTTTACACAATATTAGGTAAATGATTTTCTTGCCCGATTAAAC
TGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGATTGACTTTGACAGGA
CTTCCAGCTTTATCGCTTTTGGTTTCGTCATCATCATAGCCTAAGTTGAA
AAGGCTCTCACTAGCCTCTGATTCTGTTGCTAATAAAGCATCCATGGACA
GTTCAGGTGCTTGATCTATACCATCTGTTTCATGTTCTTCAGGAACTGAG
GCTAGTTCAGGTGATTTTTCTGTTACCGACTTTTTCTGAGGTGAGGGGGG
TGCACCTGTTAAACGTCTTGTTTTATCCATCACGCTTTGACGAACATTTC
CAAGCATGTTCATGCCTTGTTCCGCTTTTGACTTGGCTTGATCAGCTAAA
TGATGTAACATGGAGGTGACGAGACCGAGAATAATGGTCAACGCTGACAA
GCCGAGTAAGAAGTAAAGTAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_82:255391..262680-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072720 ID=TCONS_00072720|Name=TCONS_00072720|organism=Clytia hemisphaerica|type=transcript|length=7290bp|location=Sequence derived from alignment at scaffold_82:255391..262680- (Clytia hemisphaerica)
AGAAAAACCACCATTTCCATCTAAAAAGGTCACTTTTTTTGCCAAAGAAC TTTTGATAAAACTGTTCCCCTAATTTCCCCCTTTCACTAGATCTTCCTCT ATCTTATGTGCTTCAGAAAAACCAAAAACATTGCCCTAAAAGCTTAGCCT CGCGTTTATAAATTGAAAATCGGGGAAATTCTTTTAGCAAAGTATTCTAT TATCATTATCCCTTTATTTTAAGTTCTGGAACTTTTAAAGAAAAATGGAA AAATAGAAAAGTTGTATTTATACTCATAGTGTGCAGAGAGGTCCAGCCCC CAGCATTTTTCAGGGGGGGCTAAGGAAAATAGCCCTCAGCTAAATTCTAG AATTTAAATTCTAAATTCTAAATTCCTCCACCTTCACAAAGCAAAATATC AAAGAAATTTTGCATGCAAATTTTCGATAAATTTATTGCGCCGCAGGGAA AATGTTTTTTCAAGAGGGATAAAACCTTCCCAACAGCATAGATTTTTAAC ATAATTTAAAATATCTTCAACCTATCAGCTCTGCCACCAGTTCTACTACA CAGCACTCAGCCCCCCCTAGCAAGCTAGCCTCCAGTAATTTTTGAAAAAT ACAGCCCCCAATCAAACAAAAATGGTTTAGCCCCCCCCTAAGCTCAGGGG GGATTCATTCTATGATACTGCTTTATTCATATTTTGAATTTAAAGCTCTC CCTATGTGACTTTTTTTTGCAAACTTCAAAAACCTGATTTTTTTCCGTTT TTTGCGGGACTCTAACTTAAGTGCTTGCATGCAGCAATAGGTACAAAGTC CAAATATGCGTTATTCGTAGATTTTGTTTGAAATTCGGTACCTCTAGTGG GGATAATGACTTAGGGTTTAGATCTTTTGATAATCAGGATGCCATGTTGA ATAATTAAAAACTTCAAACAATGACACAGTTAATGCATTATTTTTGTAGA CTTGTGGAATGCATACTATTTTCATATAATTAGGTATTGGGCTCGCCACG CCTGTGAATCCTTTATAGCTCCCTACTAACTTGGGCAATGTATCTTTCCA TTAAGTCATTGGCGCATGATCATCTGCAAAGCTATCTTTTTCATAGTACT GAATCATTCGTTTGTTGAAGATCACCACCGAAACTACAGACTACCTGCAA GAAAAATAGTTGGGTTAATTTATTGAGGTTTCTTCCTCTCAAGTTTGGCT GTGCTGGTCCAAACAGGGGCACCTCGTGAAGGATGTGTATTTGAAATTGC TTAAAATTCTAACAAGATTCTTAATATTTCTTGCAGCAATAAATAATTAT GGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATGTAAGTTAT CTATATCTTATTAACTTAACCTTGCCTCACTCATTTTTAAATGTTTATTA TCAAGCTTTTTGGGATTTGTATTATCGTTATCTGCCAGGCTACGTGATTT TTATCTATTTTTTTTGGCCTCATCACAAAGTTTTGTATTTACCACTGATC AGTTAAAATAGCAATTAAAGTTGAACAATTTTTCCAAAGACTGTAATTCT GTTTTGATTTTCAAAAAGCCATGTGAATCAATTTATCATAATTTTTAATT GCTGCTTATAACATAGCAAAGAATTGACTGATAAAAGCTATGATGATTTT AAAAGGACGTAGAAATTTGGTTCTCAAAGCTTAACAAGCAGAATTCTAAA AATTTTTAGAACTATTGTGACTAAGTTGTAACCAACTAAAATTTACGGAG TTAGAATTTGTAGATAATCTTTTAACCTGATGCAATTTCTTCTTTTAGTA ATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCT TTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGGTAAGTT TGTTGATATTCTTTTAGTTTCATAATAATTTAAGAAACATTAGCATATAA CAGGTAGCTCTGAAATCTAAGAAATATTGATAATGTGATCTAAGTCTGCT TGCAATAAGTGTTCACTCTTATGGGTCTTTTCGTGGAAACAATGTCATTT TACAACTCGCTGATTTTTCAGCTTACCACCGGAAAAGAATTGAAGACCCA AACTTCCATTATTGAAAACAAAGGAAAGATCAGTACAACTGCCACAAAGG TACTCTAACCCCCTCGTATATTTTTTAAAAAGCTTTTTTCTTGTGTGTAA TAGGTGCTTAGCTATGACATATTTGGTGGCGTATATAACAAGATATCGAG CATTTTAAGGTGTCTATGAAATTCCATATTGATGTAAGATTCAAAATCAA TTCTTATCAATCTACTATTTCGTGTACTCATGATATGCACCACTGCAATG ACTCCACTAAATTATGCAACTTTTCTGTTGTTTTTTGTTCCACCCAACAC GTCACTTTTTCTATTGTTTAAGTGACGCATTGGGCTGAAAAGCTTAAAAG TTTTCAGAAGACTCTCCAGTGGTGCATATCATGAATATATCGAGAAAAAA GGAACTAATTTACAATTGTTGGTGCAGTCTTCAGACAATGTAGATCTTTG TTGTATTTATTTCACTGTACAAAAAGCTATTTTTTACCTCTTCTTTTCTT CTGATAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGCCATGAAA GAGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGGTAAATT CACAGTAGTTTGATAACAAAGTAGTTATCCTTGCTGCTATCTCTATGTTT TTAATTTTGTTACGATTACTGACACTCTTGTATCCCCTTCCTTAGCATTG AAAATAGCGAATTTATGTAAAATAAAGACTTTCGCATAAGGGTATTAACT CAGGCACGGGAATTTTGTTTAATGTAGTTTTTAAGAATATGGAAATAACT TAAGTTATTTGAAACAAGTGCGTTTTATTTTTAGAGGTATTCTTTTCCTG ATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAGAGTAAGT CTTGTTTTATAAAAATTTATTAAGATTAAGTCTGTTTGCTGTGAAACACG TTTCCCTTAGCTTCGCCATTCAAAGTGCTTGAACAGGAGAATATTTCATA TGGATCTTCCAAACTGTAATTTCAACTCCGTCCAGTAATAAAAAGCCGTT CAACTGAAAATCTTCAATCCTGGTTTATTTTACACTTCTTTGATCAGACA ATATTAGGTCCCTAAATGGAGATGCTAGCGTAACAGAAGTGTCATCGTTG ACTCACTGTTCTTTTCAATTTCACAGATGCATGTATGACTTGTTAGCTAA CCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAAC AAGGTATTGCATTCAAATCCTCTGATGATTATATTTTCCAATATGTTGAA ATTATTGAAATTAATAATTAGTATTATGTATTAGTGATATAATTAGAAGT GTCTGACTTCTAACGATATACCAATTCAAATTACAGATATTCCCACCGCG AAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTGTAAGTTTT ATCTTATCTTAGCTTCTAAAGTTTTCTATCTCTGCTTACCAAGCTAACAA TCAAAAGTATGCCACAAAGTTTACAACTTTATTTTCGTAAAGATAAATCT CTCATTAATCTTGAAAAAACGAAATCTATGTATTTCCTTAAAGTTCTTGC ATCGGAGGTAACCTCTATAAGGTAAGTCTCTATAAGGTAGCCCGTTTCAG TCGAAAAACACCGTTTTTTTCACTCAAACAGGCAACCCTCTAAGACTTGT AACTTTAAATTCATGTGAAAAACCATGGTTTATCTGAAATGAGTTTCTAG CACTAAAGGATAAAAAGTGCATTTTTCATCTTCTTTTTCTAAAATTTTTT AGAATAACTTATTCCAAAAAATTATAGTGCTATGAGCACAGATCTGTAAA GCCCGAAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCGAAAATTGA ACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAAAATTGTT TTTGGAGCGCGAGATAAAAAAAGTAGTGATTTCTTTGGTAGGGAAACCTA CCAAAACTTGCTTCACTTTTCGATAAAAGGCCGCGGATCTAGGCTATGAG TTATCTTTTCAACGGCGTATGATTTGTTGTATTTGAGACATTCGTTGAAA AAATGCAAGAAAACAAGCACTACTTACTTACTTAAAAGTGAATGGACTTT TAAAATCTATAAAATCGGGTGATGAAAGTCGATCTTAACATTCCCCTCTC ATTATTTTCAATTTCAGAAACAAACTTCGGCAAACTCGTTCGGCAGCTTT ACTTGGAATTGACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGC AAGGGAAAGACTTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTT TGCGNTTTTTACCTCTTCTTTTCTTCTGATAGAACGGTAAACCGTGGAAA TTGATTGACATTCCAGGCCATGAAAGAGTTCGAGATAAATATTTCTACAA CAACAAAGACAATGCAAGGTAAATTCACAGTAGTTTGATAACAAAGTAGT TATCCTTGCTGCTATCTCTATGTTTTTAATTTTGTTACGATTACTGACAC TCTTGTATCCCCTTCCTTAGCATTGAAAATAGCGAATTTATGTAAAATAA AGACTTTCGCATAAGGGTATTAACTCAGGCACGGGAATTTTGTTTAATGT AGTTTTTAAGAATATGGAAATAACTTAAGTTATTTGAAACAAGTGCGTTT TATTTTTAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAG AAATTCGTGATGTGGCAGAGTAAGTCTTGTTTTATAAAAATTTATTAAGA TTAAGTCTGTTTGCTGTGAAACACGTTTCCCTTAGCTTCGCCATTCAAAG TGCTTGAACAGGAGAATATTTTATATGGATCTTCCAAACTGTAATTTCAA CTCCGTCCAGTAATAAAAAGCCGTTCAACTGAAAATCTTCAACCCTGGTT TATTTTACACTTCTTTGATCAGACAATATTAGGTCCCTAAATGGAGATGC TAGCGTAACAGAAGTGTCATCGTTGACTCACTGTTCTTTTCAATTTCACA GATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGTC TCTGTCATGGTCGCCTGCAACAAACAAGGTAACAAATTTATATCCTCTGA TGATTATATTTTCCAATATTTTGGCAATTATTGAAATTAATAATTAGTAT TATGTATTAGTGATATAATTAGAAGTGTCTGACGTTTACCCCGTTGCTTT CATTTGTAGTCTTTTAACGATATACCAATTCAAATTACAGATATTCCCAC CGCGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTGTAAG TTTTATCTTATTTTACCTTCTAAAGTTTTCTATTCTGCTTTAGCTAACGA TCAAAAGTTTGTCACAAAGTTTACAACTTTATTTTCGTAAAGATAAATCT CTCATTAATCTTGAAAAAACGAAATCTATGTATTCCCTTAAAGTTCTTGC ATCGGAGGTAACCTCTATAAGGTAGCCCGTTTCAGTCGAAAAACACCGTT TTTTTCACTCAAACAGGCAACCCTCTAAGACTTGTAACTTTAAATTCATG TGAAAACCATGGTTTATCTGAAATGAGTTTCTAGCACTAAAGGATAAAAA GTGCATTTTTCATCTTCTTTTTCTAAAATTTTTTAGAATAACTTATTCCA AAAAATTATAGTGCTATGAGCACAGATCTGTAAAGCCCGAAACTTTAAGC TTTCTCCAGCAAAAAAAAGTGAAGCGAAAATTGAACTTTTTAAATTTCGT GCCGATGGATAGGATCTAGCATTTTAAAATTGTTTTTGGAGCGCGAGATA AAAAAAGTAGTGATTTCTTTGGTAGGGAAACCTACCAAAACTTGCTTCAC TTTTCGATAAAAGGCCGCGGATCTAGGCTATGAGTTATCTTTTCAACGGC GTATGATTTGTTGTATTTGAGACATTCGTTGAAAAAATGCAAGAAAACAA GCACTACTTACTTACTTAAAAGTGAATGGACTTTTAAAATCTATAAAATC GGGTGATGAAAGTCGATCTTAACATTCCCCTCTCATTATTTTCAATTTCA GAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGAT TATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGA ATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGA AGAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGG CTTGAAAAATTGTAGATATTATCAGTGGTTTTTAGGGTGTTGTTATTTTT ATTTATTAGTAATGATAGTAACATATTAGTCCCCGTGTCAATCAAAAATT CAGCTTTTTCTAAATTTCTAAAAACGAGAATTTTCAGATTTACATTCCTA AACCAAAAGACAAACTATCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAA AGGATCATGCAAATTTGTATAATCAATTTTGTTGTGTTTTTTAAAATATT AGTTTGTTTTAATGCAAAATGAATATAAATGTATTTTGAAATGCGAAATT TTGCATTTATATGGATCAACTATTTACAAATGCGTTTACGATTAGAAAAT AAATTGCTTTTCTTGTTTACCCAAAATATTTAATAAAAAATATTTTGAGC GAAAATTTATGAATGTTCGATCTTCTTTACACAATATTAGGTAAATGATT TTCTTGCCCGATTAAACTGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCT GATTGACTTTGACAGGACTTCCAGCTTTATCGCTTTTGGTTTCGTCATCA TCATAGCCTAAGTTGAAAAGGCTCTCACTAGCCTCTGATTCTGTTGCTAA TAAAGCATCCATGGACAGTTCAGGTGCTTGATCTATACCATCTGTTTCAT GTTCTTCAGGAACTGAGGCTAGTTCAGGTGATTTTTCTGTTACCGACTTT TTCTGAGGTGAGGGGGGTGCACCTGTTAAACGTCTTGTTTTATCCATCAC GCTTTGACGAACATTTCCAAGCATGTTCATGCCTTGTTCCGCTTTTGACT TGGCTTGATCAGCTAAATGATGTAACATGGAGGTGACGAGACCGAGAATA ATGGTCAACGCTGACAAGCCGAGTAAGAAGTAAAGTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045139XLOC_045139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072720-exon-scaffold_82-1575043694:262653..262680TCONS_00072720-exon-scaffold_82-1575043694:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:261340..261394TCONS_00072720-exon-scaffold_82-1575043694:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:260788..260882TCONS_00072720-exon-scaffold_82-1575043694:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:260532..260609TCONS_00072720-exon-scaffold_82-1575043694:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:259988..260073TCONS_00072720-exon-scaffold_82-1575043694:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257812..257871TCONS_00072720-exon-scaffold_82-1575043694:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257453..257529TCONS_00072720-exon-scaffold_82-1575043694:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257236..257290TCONS_00072720-exon-scaffold_82-1575043694:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:255391..256479TCONS_00072720-exon-scaffold_82-1575043694:255391..256479Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:262653..262680TCONS_00072720-exon-scaffold_82-1510915933:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:261340..261394TCONS_00072720-exon-scaffold_82-1510915933:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:260788..260882TCONS_00072720-exon-scaffold_82-1510915933:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:260532..260609TCONS_00072720-exon-scaffold_82-1510915933:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:259988..260073TCONS_00072720-exon-scaffold_82-1510915933:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257812..257871TCONS_00072720-exon-scaffold_82-1510915933:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257453..257529TCONS_00072720-exon-scaffold_82-1510915933:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257236..257290TCONS_00072720-exon-scaffold_82-1510915933:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:255391..256479TCONS_00072720-exon-scaffold_82-1510915933:255391..256479Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:262653..262680TCONS_00072720-exon-scaffold_82-1491911889:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:261340..261394TCONS_00072720-exon-scaffold_82-1491911889:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:260788..260882TCONS_00072720-exon-scaffold_82-1491911889:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:260532..260609TCONS_00072720-exon-scaffold_82-1491911889:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:259988..260073TCONS_00072720-exon-scaffold_82-1491911889:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257812..257871TCONS_00072720-exon-scaffold_82-1491911889:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257453..257529TCONS_00072720-exon-scaffold_82-1491911889:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257236..257290TCONS_00072720-exon-scaffold_82-1491911889:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:255391..256479TCONS_00072720-exon-scaffold_82-1491911889:255391..256479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:255391..262680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4579 16.4721 13.0974 10.523 8.05751e-06 2.24339e-06 2.46061e-06 0 15.5197 14.3119 14.3032 12.6903 11.1083 10.1138 9.90296 11.793 10.1912 9.97752 6.49648 7.77169 4.28782 6.02816 7.71074 7.65355 1.54053e-07 0 5.98608 5.77279 8.444 5.67648
Blast
BLAST of TCONS_00072720 vs. Swiss-Prot (Human)
Match: SRPRB (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.311e-49
Identity = 99/215 (46.05%), Postives = 137/215 (63.72%), Query Frame = 2
Query:  104 RSSKSGD-SVILLGLCDSGKTSLFGQLTTGKELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNARGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPTAKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFSHVNPIKVEFCECNLKNTQVE-GEVKVDGVRTWLEK 742
            RS +S   +V+L+GLCDSGKT LF +L TG    TQTSI ++   +       G    LID+PGHE +R ++    K +AR I+F++DS  F RE++DVAE +Y +L +    +N  S ++ACNKQDI  AKS  +I+ QLEKELN LR TRSAA   +D  SS+  A +GK+GK+FEFS + P+KVEF EC+ K  + + G   +  +  WL K
Sbjct:   58 RSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCA-VYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS-SSTAPAQLGKKGKEFEFSQL-PLKVEFLECSAKGGRGDVGSADIQDLEKWLAK 269          
The following BLAST results are available for this feature:
BLAST of TCONS_00072720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRB1.311e-4946.05Signal recognition particle receptor subunit beta ... [more]
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