TCONS_00072720 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072720
Unique NameTCONS_00072720
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1623

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072720 ID=TCONS_00072720|Name=TCONS_00072720|organism=Clytia hemisphaerica|type=transcript|length=1623bp
agAAAAACCACCATTTCCATCTAAAAAGCAATAAATAATTATGGAGCTGT
ATTTAGTGGCAGGGATTGTTCTCGTGACAATATTAATAGTGTTGCTTTTG
ATTCGATCAAGTAAATCTGGTGATAGCGTCATTCTTTTGGGCTTATGTGA
TTCTGGTAAAACTTCATTATTTGGACAGCTTACCACCGGAAAAGAATTGA
AGACCCAAACTTCCATTAttgaaaacaaaggaaagaTCAGTACAACTGCC
ACAAAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGCCATGAAAG
AGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGAGGTATTC
TTTTCCTGATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCA
GAATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGT
CTCTGTCATGGTCGCCTGCAACAAACAAGATATTCCCACCGCGAAATCAC
ACAACGTTATCAAAAGCCAATTGGAAAAAGAATTaaACAAACTTCGGCAA
ACTCGTTCGGCAGCTTTACTTGGAATTGACGATTATTCATCCAGTAGAAA
TGCTTTCATCGGTAAGCAAGGGAAAGACTTTGAATTCTCGCATGTCAATC
CAATCAAAGTTGAGTTTTGCGAATGTAATTTGAAGAACACACAAGTTGAG
GGAGAAGTAAAAGTCGATGGCGTTCGTACTTGGCTTGAAAAATTGTAGAT
ATTATCAGTGGTTTTTAGGgtgttgttatttttatttattagtAATGATA
GTAACATATTAGTCCCCGTGTCAATCAAAAATTCagctttttctaaattt
ctaaaaacgAGAATTTTCAGATTTACATTCCTAAACCAAAAGACAAACTA
TCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAAAGGATCATGCAAATTTG
TATAATcaattttgttgtgttttttaaaatattagtTTGTTTTAATGCAA
AATGAATATAAATGTATTTTGAAATGCGAAATTTTGCATTTATATGGATC
AACTATTTACAAATGCGTTTACGATTAGAAAATAAATTGCTTTTCTTGTT
TAcccaaaatatttaataaaaaatattttgagcgaAAATTTATGAATGTT
CGATCTTCTTTACACAATATTAGGTAAATGATTTTCTTGCCCGATTAAAC
TGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCTGATTGACTTTGACAGGA
CTTCCAGCTTTATCGCTTTTGGTTTCGTCATCATCATAGCCTAAGTTGAA
AAGGCTCTCACTAGCCTCTGATTCTGTTGCTAATAAAGCATCCATGGACA
GTTCAGGTGCTTGATCTATACCATCTGTTTCATGTTCTTCAGGAACTGAG
GCTAGTTCAGGTGATTTTTCTGTTACCGACTTTTTCTGAGGTGAGGGGGG
TGCACCTGTTAAACGTCTTGTTTTATCCATCACGCTTTGACGAACATTTC
CAAGCATGTTCATGCCTTGTTCCGCTTTTGACTTGGCTTGATCAGCTAAA
TGATGTAACATGGAGGTGACGAGACCGAGAATAATGGTCAACGCTGACAA
GCCGAGTAAGAAGTAAAGTAGCG
Run BLAST on NCBI

transcript from alignment at scaffold_82:255391..262680-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072720 ID=TCONS_00072720|Name=TCONS_00072720|organism=Clytia hemisphaerica|type=transcript|length=7290bp|location=Sequence derived from alignment at scaffold_82:255391..262680- (Clytia hemisphaerica)
AGAAAAACCACCATTTCCATCTAAAAAGGTCACTTTTTTTGCCAAAGAAC
TTTTGATAAAACTGTTCCCCTAATTTCCCCCTTTCACTAGATCTTCCTCT
ATCTTATGTGCTTCAGAAAAACCAAAAACATTGCCCTAAAAGCTTAGCCT
CGCGTTTATAAATTGAAAATCGGGGAAATTCTTTTAGCAAAGTATTCTAT
TATCATTATCCCTTTATTTTAAGTTCTGGAACTTTTAAAGAAAAATGGAA
AAATAGAAAAGTTGTATTTATACTCATAGTGTGCAGAGAGGTCCAGCCCC
CAGCATTTTTCAGGGGGGGCTAAGGAAAATAGCCCTCAGCTAAATTCTAG
AATTTAAATTCTAAATTCTAAATTCCTCCACCTTCACAAAGCAAAATATC
AAAGAAATTTTGCATGCAAATTTTCGATAAATTTATTGCGCCGCAGGGAA
AATGTTTTTTCAAGAGGGATAAAACCTTCCCAACAGCATAGATTTTTAAC
ATAATTTAAAATATCTTCAACCTATCAGCTCTGCCACCAGTTCTACTACA
CAGCACTCAGCCCCCCCTAGCAAGCTAGCCTCCAGTAATTTTTGAAAAAT
ACAGCCCCCAATCAAACAAAAATGGTTTAGCCCCCCCCTAAGCTCAGGGG
GGATTCATTCTATGATACTGCTTTATTCATATTTTGAATTTAAAGCTCTC
CCTATGTGACTTTTTTTTGCAAACTTCAAAAACCTGATTTTTTTCCGTTT
TTTGCGGGACTCTAACTTAAGTGCTTGCATGCAGCAATAGGTACAAAGTC
CAAATATGCGTTATTCGTAGATTTTGTTTGAAATTCGGTACCTCTAGTGG
GGATAATGACTTAGGGTTTAGATCTTTTGATAATCAGGATGCCATGTTGA
ATAATTAAAAACTTCAAACAATGACACAGTTAATGCATTATTTTTGTAGA
CTTGTGGAATGCATACTATTTTCATATAATTAGGTATTGGGCTCGCCACG
CCTGTGAATCCTTTATAGCTCCCTACTAACTTGGGCAATGTATCTTTCCA
TTAAGTCATTGGCGCATGATCATCTGCAAAGCTATCTTTTTCATAGTACT
GAATCATTCGTTTGTTGAAGATCACCACCGAAACTACAGACTACCTGCAA
GAAAAATAGTTGGGTTAATTTATTGAGGTTTCTTCCTCTCAAGTTTGGCT
GTGCTGGTCCAAACAGGGGCACCTCGTGAAGGATGTGTATTTGAAATTGC
TTAAAATTCTAACAAGATTCTTAATATTTCTTGCAGCAATAAATAATTAT
GGAGCTGTATTTAGTGGCAGGGATTGTTCTCGTGACAATATGTAAGTTAT
CTATATCTTATTAACTTAACCTTGCCTCACTCATTTTTAAATGTTTATTA
TCAAGCTTTTTGGGATTTGTATTATCGTTATCTGCCAGGCTACGTGATTT
TTATCTATTTTTTTTGGCCTCATCACAAAGTTTTGTATTTACCACTGATC
AGTTAAAATAGCAATTAAAGTTGAACAATTTTTCCAAAGACTGTAATTCT
GTTTTGATTTTCAAAAAGCCATGTGAATCAATTTATCATAATTTTTAATT
GCTGCTTATAACATAGCAAAGAATTGACTGATAAAAGCTATGATGATTTT
AAAAGGACGTAGAAATTTGGTTCTCAAAGCTTAACAAGCAGAATTCTAAA
AATTTTTAGAACTATTGTGACTAAGTTGTAACCAACTAAAATTTACGGAG
TTAGAATTTGTAGATAATCTTTTAACCTGATGCAATTTCTTCTTTTAGTA
ATAGTGTTGCTTTTGATTCGATCAAGTAAATCTGGTGATAGCGTCATTCT
TTTGGGCTTATGTGATTCTGGTAAAACTTCATTATTTGGACAGGTAAGTT
TGTTGATATTCTTTTAGTTTCATAATAATTTAAGAAACATTAGCATATAA
CAGGTAGCTCTGAAATCTAAGAAATATTGATAATGTGATCTAAGTCTGCT
TGCAATAAGTGTTCACTCTTATGGGTCTTTTCGTGGAAACAATGTCATTT
TACAACTCGCTGATTTTTCAGCTTACCACCGGAAAAGAATTGAAGACCCA
AACTTCCATTATTGAAAACAAAGGAAAGATCAGTACAACTGCCACAAAGG
TACTCTAACCCCCTCGTATATTTTTTAAAAAGCTTTTTTCTTGTGTGTAA
TAGGTGCTTAGCTATGACATATTTGGTGGCGTATATAACAAGATATCGAG
CATTTTAAGGTGTCTATGAAATTCCATATTGATGTAAGATTCAAAATCAA
TTCTTATCAATCTACTATTTCGTGTACTCATGATATGCACCACTGCAATG
ACTCCACTAAATTATGCAACTTTTCTGTTGTTTTTTGTTCCACCCAACAC
GTCACTTTTTCTATTGTTTAAGTGACGCATTGGGCTGAAAAGCTTAAAAG
TTTTCAGAAGACTCTCCAGTGGTGCATATCATGAATATATCGAGAAAAAA
GGAACTAATTTACAATTGTTGGTGCAGTCTTCAGACAATGTAGATCTTTG
TTGTATTTATTTCACTGTACAAAAAGCTATTTTTTACCTCTTCTTTTCTT
CTGATAGAACGGTAAACCGTGGAAATTGATTGACATTCCAGGCCATGAAA
GAGTTCGAGATAAATATTTCTACAACAACAAAGACAATGCAAGGTAAATT
CACAGTAGTTTGATAACAAAGTAGTTATCCTTGCTGCTATCTCTATGTTT
TTAATTTTGTTACGATTACTGACACTCTTGTATCCCCTTCCTTAGCATTG
AAAATAGCGAATTTATGTAAAATAAAGACTTTCGCATAAGGGTATTAACT
CAGGCACGGGAATTTTGTTTAATGTAGTTTTTAAGAATATGGAAATAACT
TAAGTTATTTGAAACAAGTGCGTTTTATTTTTAGAGGTATTCTTTTCCTG
ATTGACAGTGTCAATTTCCCTCGAGAAATTCGTGATGTGGCAGAGTAAGT
CTTGTTTTATAAAAATTTATTAAGATTAAGTCTGTTTGCTGTGAAACACG
TTTCCCTTAGCTTCGCCATTCAAAGTGCTTGAACAGGAGAATATTTCATA
TGGATCTTCCAAACTGTAATTTCAACTCCGTCCAGTAATAAAAAGCCGTT
CAACTGAAAATCTTCAATCCTGGTTTATTTTACACTTCTTTGATCAGACA
ATATTAGGTCCCTAAATGGAGATGCTAGCGTAACAGAAGTGTCATCGTTG
ACTCACTGTTCTTTTCAATTTCACAGATGCATGTATGACTTGTTAGCTAA
CCGCACAATGCAAAGAAACAAAGTCTCTGTCATGGTCGCCTGCAACAAAC
AAGGTATTGCATTCAAATCCTCTGATGATTATATTTTCCAATATGTTGAA
ATTATTGAAATTAATAATTAGTATTATGTATTAGTGATATAATTAGAAGT
GTCTGACTTCTAACGATATACCAATTCAAATTACAGATATTCCCACCGCG
AAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTGTAAGTTTT
ATCTTATCTTAGCTTCTAAAGTTTTCTATCTCTGCTTACCAAGCTAACAA
TCAAAAGTATGCCACAAAGTTTACAACTTTATTTTCGTAAAGATAAATCT
CTCATTAATCTTGAAAAAACGAAATCTATGTATTTCCTTAAAGTTCTTGC
ATCGGAGGTAACCTCTATAAGGTAAGTCTCTATAAGGTAGCCCGTTTCAG
TCGAAAAACACCGTTTTTTTCACTCAAACAGGCAACCCTCTAAGACTTGT
AACTTTAAATTCATGTGAAAAACCATGGTTTATCTGAAATGAGTTTCTAG
CACTAAAGGATAAAAAGTGCATTTTTCATCTTCTTTTTCTAAAATTTTTT
AGAATAACTTATTCCAAAAAATTATAGTGCTATGAGCACAGATCTGTAAA
GCCCGAAACTTTAAGCTTTCTCCAGCAAAAAAAAGTGAAGCGAAAATTGA
ACTTTTTAAATTTCGTGCCGATGGATAGGATCTAGCATTTTAAAATTGTT
TTTGGAGCGCGAGATAAAAAAAGTAGTGATTTCTTTGGTAGGGAAACCTA
CCAAAACTTGCTTCACTTTTCGATAAAAGGCCGCGGATCTAGGCTATGAG
TTATCTTTTCAACGGCGTATGATTTGTTGTATTTGAGACATTCGTTGAAA
AAATGCAAGAAAACAAGCACTACTTACTTACTTAAAAGTGAATGGACTTT
TAAAATCTATAAAATCGGGTGATGAAAGTCGATCTTAACATTCCCCTCTC
ATTATTTTCAATTTCAGAAACAAACTTCGGCAAACTCGTTCGGCAGCTTT
ACTTGGAATTGACGATTATTCATCCAGTAGAAATGCTTTCATCGGTAAGC
AAGGGAAAGACTTTGAATTCTCGCATGTCAATCCAATCAAAGTTGAGTTT
TGCGNTTTTTACCTCTTCTTTTCTTCTGATAGAACGGTAAACCGTGGAAA
TTGATTGACATTCCAGGCCATGAAAGAGTTCGAGATAAATATTTCTACAA
CAACAAAGACAATGCAAGGTAAATTCACAGTAGTTTGATAACAAAGTAGT
TATCCTTGCTGCTATCTCTATGTTTTTAATTTTGTTACGATTACTGACAC
TCTTGTATCCCCTTCCTTAGCATTGAAAATAGCGAATTTATGTAAAATAA
AGACTTTCGCATAAGGGTATTAACTCAGGCACGGGAATTTTGTTTAATGT
AGTTTTTAAGAATATGGAAATAACTTAAGTTATTTGAAACAAGTGCGTTT
TATTTTTAGAGGTATTCTTTTCCTGATTGACAGTGTCAATTTCCCTCGAG
AAATTCGTGATGTGGCAGAGTAAGTCTTGTTTTATAAAAATTTATTAAGA
TTAAGTCTGTTTGCTGTGAAACACGTTTCCCTTAGCTTCGCCATTCAAAG
TGCTTGAACAGGAGAATATTTTATATGGATCTTCCAAACTGTAATTTCAA
CTCCGTCCAGTAATAAAAAGCCGTTCAACTGAAAATCTTCAACCCTGGTT
TATTTTACACTTCTTTGATCAGACAATATTAGGTCCCTAAATGGAGATGC
TAGCGTAACAGAAGTGTCATCGTTGACTCACTGTTCTTTTCAATTTCACA
GATGCATGTATGACTTGTTAGCTAACCGCACAATGCAAAGAAACAAAGTC
TCTGTCATGGTCGCCTGCAACAAACAAGGTAACAAATTTATATCCTCTGA
TGATTATATTTTCCAATATTTTGGCAATTATTGAAATTAATAATTAGTAT
TATGTATTAGTGATATAATTAGAAGTGTCTGACGTTTACCCCGTTGCTTT
CATTTGTAGTCTTTTAACGATATACCAATTCAAATTACAGATATTCCCAC
CGCGAAATCACACAACGTTATCAAAAGCCAATTGGAAAAAGAATTGTAAG
TTTTATCTTATTTTACCTTCTAAAGTTTTCTATTCTGCTTTAGCTAACGA
TCAAAAGTTTGTCACAAAGTTTACAACTTTATTTTCGTAAAGATAAATCT
CTCATTAATCTTGAAAAAACGAAATCTATGTATTCCCTTAAAGTTCTTGC
ATCGGAGGTAACCTCTATAAGGTAGCCCGTTTCAGTCGAAAAACACCGTT
TTTTTCACTCAAACAGGCAACCCTCTAAGACTTGTAACTTTAAATTCATG
TGAAAACCATGGTTTATCTGAAATGAGTTTCTAGCACTAAAGGATAAAAA
GTGCATTTTTCATCTTCTTTTTCTAAAATTTTTTAGAATAACTTATTCCA
AAAAATTATAGTGCTATGAGCACAGATCTGTAAAGCCCGAAACTTTAAGC
TTTCTCCAGCAAAAAAAAGTGAAGCGAAAATTGAACTTTTTAAATTTCGT
GCCGATGGATAGGATCTAGCATTTTAAAATTGTTTTTGGAGCGCGAGATA
AAAAAAGTAGTGATTTCTTTGGTAGGGAAACCTACCAAAACTTGCTTCAC
TTTTCGATAAAAGGCCGCGGATCTAGGCTATGAGTTATCTTTTCAACGGC
GTATGATTTGTTGTATTTGAGACATTCGTTGAAAAAATGCAAGAAAACAA
GCACTACTTACTTACTTAAAAGTGAATGGACTTTTAAAATCTATAAAATC
GGGTGATGAAAGTCGATCTTAACATTCCCCTCTCATTATTTTCAATTTCA
GAAACAAACTTCGGCAAACTCGTTCGGCAGCTTTACTTGGAATTGACGAT
TATTCATCCAGTAGAAATGCTTTCATCGGTAAGCAAGGGAAAGACTTTGA
ATTCTCGCATGTCAATCCAATCAAAGTTGAGTTTTGCGAATGTAATTTGA
AGAACACACAAGTTGAGGGAGAAGTAAAAGTCGATGGCGTTCGTACTTGG
CTTGAAAAATTGTAGATATTATCAGTGGTTTTTAGGGTGTTGTTATTTTT
ATTTATTAGTAATGATAGTAACATATTAGTCCCCGTGTCAATCAAAAATT
CAGCTTTTTCTAAATTTCTAAAAACGAGAATTTTCAGATTTACATTCCTA
AACCAAAAGACAAACTATCTTATTCCCGTGGTTTTCTAGCCTTTTCAAAA
AGGATCATGCAAATTTGTATAATCAATTTTGTTGTGTTTTTTAAAATATT
AGTTTGTTTTAATGCAAAATGAATATAAATGTATTTTGAAATGCGAAATT
TTGCATTTATATGGATCAACTATTTACAAATGCGTTTACGATTAGAAAAT
AAATTGCTTTTCTTGTTTACCCAAAATATTTAATAAAAAATATTTTGAGC
GAAAATTTATGAATGTTCGATCTTCTTTACACAATATTAGGTAAATGATT
TTCTTGCCCGATTAAACTGGTTTTGGAGTCAGTTCTTTCTTTATGCTTCT
GATTGACTTTGACAGGACTTCCAGCTTTATCGCTTTTGGTTTCGTCATCA
TCATAGCCTAAGTTGAAAAGGCTCTCACTAGCCTCTGATTCTGTTGCTAA
TAAAGCATCCATGGACAGTTCAGGTGCTTGATCTATACCATCTGTTTCAT
GTTCTTCAGGAACTGAGGCTAGTTCAGGTGATTTTTCTGTTACCGACTTT
TTCTGAGGTGAGGGGGGTGCACCTGTTAAACGTCTTGTTTTATCCATCAC
GCTTTGACGAACATTTCCAAGCATGTTCATGCCTTGTTCCGCTTTTGACT
TGGCTTGATCAGCTAAATGATGTAACATGGAGGTGACGAGACCGAGAATA
ATGGTCAACGCTGACAAGCCGAGTAAGAAGTAAAGTAGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045139XLOC_045139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072720-exon-scaffold_82-1575043694:262653..262680TCONS_00072720-exon-scaffold_82-1575043694:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:261340..261394TCONS_00072720-exon-scaffold_82-1575043694:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:260788..260882TCONS_00072720-exon-scaffold_82-1575043694:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:260532..260609TCONS_00072720-exon-scaffold_82-1575043694:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:259988..260073TCONS_00072720-exon-scaffold_82-1575043694:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257812..257871TCONS_00072720-exon-scaffold_82-1575043694:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257453..257529TCONS_00072720-exon-scaffold_82-1575043694:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:257236..257290TCONS_00072720-exon-scaffold_82-1575043694:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1575043694:255391..256479TCONS_00072720-exon-scaffold_82-1575043694:255391..256479Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:262653..262680TCONS_00072720-exon-scaffold_82-1510915933:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:261340..261394TCONS_00072720-exon-scaffold_82-1510915933:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:260788..260882TCONS_00072720-exon-scaffold_82-1510915933:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:260532..260609TCONS_00072720-exon-scaffold_82-1510915933:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:259988..260073TCONS_00072720-exon-scaffold_82-1510915933:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257812..257871TCONS_00072720-exon-scaffold_82-1510915933:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257453..257529TCONS_00072720-exon-scaffold_82-1510915933:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:257236..257290TCONS_00072720-exon-scaffold_82-1510915933:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1510915933:255391..256479TCONS_00072720-exon-scaffold_82-1510915933:255391..256479Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:262653..262680TCONS_00072720-exon-scaffold_82-1491911889:262653..262680Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:261340..261394TCONS_00072720-exon-scaffold_82-1491911889:261340..261394Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:260788..260882TCONS_00072720-exon-scaffold_82-1491911889:260788..260882Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:260532..260609TCONS_00072720-exon-scaffold_82-1491911889:260532..260609Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:259988..260073TCONS_00072720-exon-scaffold_82-1491911889:259988..260073Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257812..257871TCONS_00072720-exon-scaffold_82-1491911889:257812..257871Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257453..257529TCONS_00072720-exon-scaffold_82-1491911889:257453..257529Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:257236..257290TCONS_00072720-exon-scaffold_82-1491911889:257236..257290Clytia hemisphaericaexon
TCONS_00072720-exon-scaffold_82-1491911889:255391..256479TCONS_00072720-exon-scaffold_82-1491911889:255391..256479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:255391..262680 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.4579	16.4721	13.0974	10.523	8.05751e-06	2.24339e-06	2.46061e-06	0	15.5197	14.3119	14.3032	12.6903	11.1083	10.1138	9.90296	11.793	10.1912	9.97752	6.49648	7.77169	4.28782	6.02816	7.71074	7.65355	1.54053e-07	0	5.98608	5.77279	8.444	5.67648
Blast
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BLAST of TCONS_00072720 vs. Swiss-Prot (Human)
Match: SRPRB (Signal recognition particle receptor subunit beta OS=Homo sapiens GN=SRPRB PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 1.311e-49
Identity = 99/215 (46.05%), Postives = 137/215 (63.72%), Query Frame = 2 
Query:  104 RSSKSGD-SVILLGLCDSGKTSLFGQLTTGKELKTQTSIIENKGKISTTATKNGKPWKLIDIPGHERVRDKYFYNNKDNARGILFLIDSVNFPREIRDVAECMYDLLANRTMQRNKVSVMVACNKQDIPTAKSHNVIKSQLEKELNKLRQTRSAALLGIDDYSSSRNAFIGKQGKDFEFSHVNPIKVEFCECNLKNTQVE-GEVKVDGVRTWLEK 742
            RS +S   +V+L+GLCDSGKT LF +L TG    TQTSI ++   +       G    LID+PGHE +R ++    K +AR I+F++DS  F RE++DVAE +Y +L +    +N  S ++ACNKQDI  AKS  +I+ QLEKELN LR TRSAA   +D  SS+  A +GK+GK+FEFS + P+KVEF EC+ K  + + G   +  +  WL K
Sbjct:   58 RSRRSSQRAVLLVGLCDSGKTLLFVRLLTGLYRDTQTSITDSCA-VYRVNNNRGNSLTLIDLPGHESLRLQFLERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDS-SSTAPAQLGKKGKEFEFSQL-PLKVEFLECSAKGGRGDVGSADIQDLEKWLAK 269
The following BLAST results are available for this feature:
BLAST of TCONS_00072720 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRPRB1.311e-4946.05Signal recognition particle receptor subunit beta ... [more]
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