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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072718 ID=TCONS_00072718|Name=TCONS_00072718|organism=Clytia hemisphaerica|type=transcript|length=4023bp
CaacaaaaaatagacaaaaatatcaAGTATTATCCGACTAGATATTATCG
TTTTATTCGCCCTCGCAAATTAAGTCTGTAACATCATCAgataatattta
gaaaaattttgtttaataGTTCATAGTTCCTGGTTAATTTTAAAAATCTC
GAAACAAATCCAGGACTAAACTAAAAAATCTTGTTATTCGTTAAAAACAT
TGTAAGAAGACAATATAAGTCACCCTTTCACGAGGTCAAACAGTCCAGAC
GATCAGTGCTTTGAGATTGTACTTGGCCATAAGGCGACATAGGAATTGGT
ATTTTACATTCTCTCCATAAAACACCAGCACAAAAAAAGCTCAGGACCTG
TAGAACTTAACAGAAGAGAAGTTGAATTTCTGGAGCCATTTCTATGATTT
ATTATTTGAAACTTCATCCCAGTATTTCTTGACCTTTTCTCGATCgaata
caaaaaaaatcatgtcAGTAGCTTATCGAGGCACTTCAAGGCACTTGTTT
CTTTCGATATCACATCACACTAAAAGACcgtaattaaattttttttgatc
ccTAAATATCTAGTTAATTGTTTAAAATGGCCGATGACCACATTAAAAAA
CTTTCTAGTATATGTCGTCTTTGTCGTGGTGAAGTCATTGCACCCATGCC
AGGATATGTTAACCCCAAAACAGCACCTGAATGCAGAGGAAATTAGCAAG
TTGtttaaatatgatatttcaaatGACTGGTTATCTATCCACCCTAAGAA
ATTATGTACAAAATGCGCTCGTCAGTTGAACCGAAACTCAAACCCAAAAC
CTCTGACAATTGCAGAATTTGAAACGCATTCCACTGAGTCAGATTGTGCT
GTTTGTTTAAATAGATTAAGCATTCATAGTTATAAAGTGTCAAATGAAAA
ATTGCCACCATTACCGATAAAGATTGTAGAGAGtgcgaaacaaaatggct
ttatacatgaagaaaatttgaaagccTTTCTTTACCTTCATCCGAACCAA
GGATAGCACACATGCTCCAATAATTGATACGTCACAAAAGACCTTTTAAG
TGAGGATTACAGATGGCAGGTCATTGTGTTTGACAAGATCCTTTCACCAG
ATAAAGTACCAGCCCTCAGAACAGTGGATACGAGCAACTTAGATCGACAG
GGTTTCTTCAACTACCACATAGATCAACACTGCAACAATATACCAGCTTC
GCATTAAGTGGTGCCTCTTTTAATCCTGACATTATTATGAAGTTCCATAG
AACTAAAACTTTATGAAGATCCTGCTCACGAGAGAGTTTGTTCAATTATG
TTCGATGAGATGAAGATCAAGTCTGGCCTTGTTTTCAGCAGGACAACTGG
TACCATAATCGGCTTCGCTGAGCTTGGTCAGATTTCAGACGAGATTGACA
GTCTTGAAAGATCTCTCGAGCAAGAGAGGAAGAAATTGAGACCACTTTCT
TTCACTATGTTACAACCACCTCCTATATCAACTCATCTGAGAAAATCCCA
GCCCTGCAAAAAAAGACAAACAAAACTTGGAGCCCAGTACTTCTTCTCGA
CAAAAAACACCCAAACTACCAACAACTCAAAAACGACAGCTGATtgatat
tagcgagtttatgtatttgttcTTTTCGGTGATGGAAGACGGCGGATCGG
GGTAGCCTGTGCGGATTTCTGTATTTTGCCCAGGCTGAAGCagacccgca
gttctgacctgcaaaatcgaggacggtaaaagtccTGATATACCGTCCTC
CTTAGTCAGTTATGATCTAAGGTGGAAGTAACTTTTTTTTACCGGGGAAG
TATTGTCCGTAACCGGTTTGGGTgttaagaaaaacaaaacattaattctc
tttgtgaaaaaaactttaacttGTAGATTTGGTATTTAACTTTATTAATT
AACCATGGAAAATCATGCACCTCAGCTCTTTAAAATGTAAGTATATGgat
attttctatattttattTCAACAGTCAGTTGACTGGATGCAACCATTGAT
TGGATTTTTATCTTTATGCAATATCAAAACGtacatgttttgttttgatt
tggatgTTATTTACCCTCCATTGATTagttcattattttttctatttcag
aACAACCACACCAAACTCACAAAAGGAGAACGTCAATCCATCGACAGCAA
TAACCGTAATAACCGCTACACccaagaagaaaaaagttaTCGTTGCTAGT
CAACAACCAAAAACTTTGTTTAAATGTCCTGTGGTTTCAGTTCCTGTTGT
TTCTCGTCCTCCTTTTCGTCCTCCTGTTGCGACCATTACAAATCGTCCTG
CTGTTCCTGTTTGCCGTCCTTCTGTTAATGTTCCTGTTAGTCGTTTTACT
ATCCCTGGTGTTGCATCCATGTCTCGTCCTCCTGTTGCGACCATCACAAA
TGCATCCCGCTGTTCCTGTTGTCGTTAGTTCCCATGTGGGTGTTAATGTT
CCTGTTTGTCGTCCTGCTGTTAATGTTTTAATCCCATCCATTTCATCAAA
CGTAACTACTGTTCCTGTGTGTCGTTCTACTACTGTTCCtgcatcatcat
catcatcatcaatatcTAAAAAATCTTCTTCATCGACTCCCAGACTGTCC
AAATTTACAAGAGAAGAGGATATAAAACTATGTCGGGAAGCTATGACGGA
GGAGTTGTTTAGTACAACAAAAGGGACACCTGCCAGGGGTgatatttatg
aaaaattatCCGTGAAAATGACCACAATAACTGGCAGGCCCTTAAAGAAA
CGAAATATACGTGAACGTTTATCAGAGCTAATGACCGAATTTAAGAAAGA
TCAGAATGGTCAAATTAGAGGGAGTGGTATGAATGATCCTGTTCCAGCCG
AGCTGGAAGTGTTGTTACAGGATATGTGTGACCTAGAAAAGGATGCAGAA
GTTTTTTGTTTATGTATTTCTCGAAAAAAGGACGACGACGGTAAAACACT
ATCTCAATTTGTTTTTCACCGAATATCAACTTTGCAACCATGCCCGCCAT
CGTCCACCGCCCTCAAAAAAggaaatacataaactcgataTTGAGAGAGT
TGTTAGTGAAGCAGGAGAGTCTGAAACAGAAAGCAAACCTTCTGAAAAAG
AGGATTCTAAGTTCAAAGTAAAAGCCACAAACCGAAAAAGCTGAATACAC
AATTCAAAACAGAAAACTAATACACGTAGTTGGCAATCTAAATCAGTGAA
ATGAGAACCTGTCCCTAATCAATCTACCAAAAGTAAAGAATTAGTAACTA
AGTTTGACGGCAGTCAGAGGCAACCCTAAAGCTCCtagctatctacctga
aggtagggaACAGCGTCATTCTTTCTCACAGGATTGCTCAACTTACTCGC
GATcgttctcttaattgctgagcatcaagcatgGAGGCATTGATAGCGCT
GACAGTTTTAATGAGGTAAACAAGAAAACTAAAATTGATGATTGCCCCCG
CAACGAACGAAGTGAGTGAGGAAGCagtcatagcttcacgcatagatatt
ggactggaatctcgaaattttgttgtttttgtgtgttttgtcgcgcaagc
atcgccgtagttagtctcttctgtaaatgttcggtttttttttccgggac
ggcagttgctagcctaaaaactttttcttttttatagcaggcgccgcggg
cattttactcagcttttgacagtagattctattccgcttgtagaattttg
cccgattggtcaacatgcaggaaatggaatggagaagtttctggaagttt
ttttCTTGATTATGTGTAGAATCCCTTGccttgacttttttttaatcatt
gcattatttttttatatttttattgtaacttttttaataGTATATTGTTT
TGTAATACCAGGGTTGGTAAtgcatgaattttttttatatctttataaTG
AATTTGAAGGTTGTTGTTATATTTTTATACAGAATTATTGAATTACgtat
tatttatgattttgtacaaattttatttgattgattACAATTATACCACA
Gaacaataatgaacaatgattaa Run BLAST on NCBI protein sequence of TCONS_00072718-protein >TCONS_00072718-protein ID=TCONS_00072718-protein|Name=TCONS_00072718-protein|organism=Clytia hemisphaerica|type=polypeptide|length=234bp
MFLLVVLLSLVLHPCLVLLLRPSQMHPAVPVVVSSHVGVNVPVCRPAVNV
LIPSISSNVTTVPVCRSTTVPASSSSSSISKKSSSSTPRLSKFTREEDIK
LCREAMTEELFSTTKGTPARGDIYEKLSVKMTTITGRPLKKRNIRERLSE
LMTEFKKDQNGQIRGSGMNDPVPAELEVLLQDMCDLEKDAEVFCLCISRK
KDDDGKTLSQFVFHRISTLQPCPPSSTALKKGNT Run BLAST on NCBI transcript from alignment at scaffold_82:240200..245360- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072718 ID=TCONS_00072718|Name=TCONS_00072718|organism=Clytia hemisphaerica|type=transcript|length=5161bp|location=Sequence derived from alignment at scaffold_82:240200..245360- (Clytia hemisphaerica)
CAACAAAAAATAGACAAAAATATCAAGTATTATCCGACTAGATATTATCG
TTTTATTCGCCCTCGCAAATTAAGTCTGTAACATCATCAGATAATATTTA
GAAAAATTTTGTTTAATAGTTCATAGTTCCTGGTTAATTTTAAAAATCTC
GAAACAAATCCAGGACTAAACTAAAAAATCTTGTTATTCGTTAAAAACAT
TGTAAGAAGACAATATAAGTCACCCTTTCACGAGGTCAAACAGTCCAGAC
GATCAGTGCTTTGAGATTGTACTTGGCCATAAGGCGACATAGGAATTGGT
ATTTTACATTCTCTCCATAAAACACCAGCACAAAAAAAGCTCAGGACCTG
TAGAACTTAACAGAAGAGAAGTTGAATTTCTGGAGCCATTTCTATGATTT
ATTATTTGAAACTTCATCCCAGTATTTCTTGACCTTTTCTCGATCGAATA
CAAAAAAAATCATGTCAGTAGCTTATCGAGGCACTTCAAGGCACTTGTTT
CTTTCGATATCACATCACACTAAAAGACCGTAATTAAATTTTTTTTGATC
CCTAAATATCTAGTTAATTGTTTAAAATGGCCGATGACCACATTAAAAAA
CTTTCTAGTATATGTCGTCTTTGTCGTGGTGAAGTCATTGCACCCATGCC
AGGATATGCACTTGAATGCAAAGAGGAAATTAGAAAGTTGTTTAAATATG
ATATTTCAAATGCCTGGTTATCTATCCACCCTAAGAAATTATGTGCAAAA
TGGGCTCGTCAGTTGAACCGAGTCTCAAACCCAAAACCTCAGACAATTGC
AGAATTTGAAACGCATTCCACTGAGTCAGATTGTGCTGTTTGTTCAACCC
TACCTACTGAGAGGGGGGCACTTTGTGCCCCCCCCCCTGTTAGAAAATTG
GCCGACATTTTTTAACTAGTGAGGCTATGAAGCTGAAATTTTATGACTTT
TCACCAAATTTTGTGGGGAATGTTTTGGTTAAAACTATTTTTTCATTGGT
CAAGTATTTTAGTCCTAATGATAGGTTTGTCGGTGACCACTACCATCCCA
CAACTGCAGCACAGGCTATTTTGCTCTTTTTTCTGTGCTTACTCCAGGAT
ACTATAACATGTTACCAGGTATACTTTAATGAACCATTTCATTTGTATTG
CTTCTATTTCATCTTAAAGGAGAATTAGCAGCAAAAAATAAATATAAATA
TGACAAAAAAAAGTANCGTCTATTTGGAACCTAGTACACGAGAATTAGCA
GCAAAAAATAAATATAAATATGACAAAAAAAAGTATCACCGACTTGAAAA
AGTTGAAATGTTCTGATTTTACGCGGTTTTGAAAGTTTATAACATTTTCT
TCACTTTTGGCGCGCCATAGTAGAACGTTACGAGAAAATTGTTAATTTAG
ATTTTAATTTCCATTTAGTACATTGTAAAAGCTTTCAAATAAAAGCAAAA
TGAAGGAGAATGTGTTTCTCAGTCTGTTTCAATAGCAATTTTAAGAAACA
TCATTTTTTTAAAGTTTTTTTGGGTGATTTTTGCTAATTGTTGATACAAT
TGATGACGTCATCAAAAATTGTTTGTTATAGGTTTAAGCATTGCTTTACC
AATTTTCATGACAAAATAATGTTCGTATCCTAAGTTATCCACGGGGGGCA
CTATGTGCCCCCCCTTTCAGTTCTAAGGGACCCAAATAGCTCTCAGTAGG
TAGGGTTGNGTTTAAAATGGCCGATGACCACATTAAAAAACTTTCTAGTA
TATGTCGTCTTTGTCGTGGTGAAGTCATTGCACATGCCAGGATATGTTAA
CCCCAAAACAGCACCTGAATGCAGAGGAAATTAGCAAGTTGTTTAAATAT
GATATTTCAAATGACTGGTTATCTATCCACCCTAAGAAATTATGTACAAA
ATGCGCTCGTCAGTTGAACCGAAACTCAAACCCAAAACCTCTGACAATTG
CAGAATTTGAAACGCATTCCACTGAGTCAGATTGTGCTGTTTGTTTAAAT
AGATTAAGCATTCATAGTTATAAAGTGTCAAATGAAAAATTGCCACCATT
ACCGATAAAGATTGTAGAGAGTGCGAAACAAAATGGCTTTATACATGAAG
AAAATTTGAAAGCCTTTCTTTACCTTCATCCGAACCAAGGATAGCACACA
TGCTCCAATAATTGATACGTCACAAAAGACCTTTTAAGTGAGGATTACAG
ATGGCAGGTCATTGTGTTTGACAAGATCCTTTCACCAGATAAAGTACCAG
CCCTCAGAACAGTGGATACGAGCAACTTAGATCGACAGGGTTTCTTCAAC
TACCACATAGATCAACACTGCAACAATATACCAGCTTCGCATTAAGTGGT
GCCTCTTTTAATCCTGACATTATTATGAAGTTCCATAGAACTAAAACTTT
ATGAAGATCCTGCTCACGAGAGAGTTTGTTCAATTATGTTCGATGAGATG
AAGATCAAGTCTGGCCTTGTTTTCAGCAGGACAACTGGTACCATAATCGG
CTTCGCTGAGCTTGGTCAGATTTCAGACGAGATTGACAGTCTTGAAAGAT
CTCTCGAGCAAGAGAGGAAGAAATTGAGACCACTTTCTTTCACTATGTTA
CAACCACCTCCTATATCAACTCATCTGAGAAAATCCCAGCCCTGCAAAAA
AAGACAAACAAAACTTGGAGCCCAGTACTTCTTCTCGACAAAAAACACCC
AAACTACCAACAACTCAAAAACGACAGCTGATTGATATTAGCGAGTTTAT
GTATTTGTTCTTTTCGGTGATGGAAGACGGCGGATCGGGGTAGCCTGTGC
GGATTTCTGTATTTTGCCCAGGCTGAAGCAGACCCGCAGTTCTGACCTGC
AAAATCGAGGACGGTAAAAGTCCTGATATACCGTCCTCCTTAGTCAGTTA
TGATCTAAGGTGGAAGTAACTTTTTTTTACCGGGGAAGTATTGTCCGTAA
CCGGTTTGGGTGTTAAGAAAAACAAAACATTAATTCTCTTTGTGAAAAAA
ACTTTAACTTGTAGATTTGGTATTTAACTTTATTAATTAACCATGGAAAA
TCATGCACCTCAGCTCTTTAAAATGTAAGTATATGGATATTTTCTATATT
TTATTTCAACAGTCAGTTGACTGGATGCAACCATTGATTGGATTTTTATC
TTTATGCAATATCAAAACGTACATGTTTTGTTTTGATTTGGATGTTATTT
ACCCTCCATTGATTAGTTCATTATTTTTTCTATTTCAGAACAACCACACC
AAACTCACAAAAGGAGAACGTCAATCCATCGACAGCAATAACCGTAATAA
CCGCTACACCCAAGAAGAAAAAAGTTATCGTTGCTAGTCAACAACCAAAA
ACTTTGTTTAAATGTCCTGTGGTTTCAGTTCCTGTTGTTTCTCGTCCTCC
TTTTCGTCCTCCTGTTGCGACCATTACAAATCGTCCTGCTGTTCCTGTTT
GCCGTCCTTCTGTTAATGTTCCTGTTAGTCGTTTTACTATCCCTGGTGTT
GCATCCATGTCTCGTCCTCCTGTTGCGACCATCACAAATGCATCCCGCTG
TTCCTGTTGTCGTTAGTTCCCATGTGGGTGTTAATGTTCCTGTTTGTCGT
CCTGCTGTTAATGTTTTAATCCCATCCATTTCATCAAACGTAACTACTGT
TCCTGTGTGTCGTTCTACTACTGTTCCTGCATCATCATCATCATCATCAA
TATCTAAAAAATCTTCTTCATCGACTCCCAGACTGTCCAAATTTACAAGA
GAAGAGGATATAAAACTATGTCGGGAAGCTATGACGGAGGAGTTGTTTAG
TACAACAAAAGGGACACCTGCCAGGGGTGATATTTATGAAAAATTATCCG
TGAAAATGACCACAATAACTGGCAGGCCCTTAAAGAAACGAAATATACGT
GAACGTTTATCAGAGCTAATGACCGAATTTAAGAAAGATCAGAATGGTCA
AATTAGAGGGAGTGGTATGAATGATCCTGTTCCAGCCGAGCTGGAAGTGT
TGTTACAGGATATGTGTGACCTAGAAAAGGATGCAGAAGTTTTTTGTTTA
TGTATTTCTCGAAAAAAGGACGACGACGGTAAAACACTATCTCAATTTGT
TTTTCACCGAATATCAACTTTGCAACCATGCCCGCCATCGTCCACCGCCC
TCAAAAAAGGAAATACATAAACTCGATATTGAGAGAGTTGTTAGTGAAGC
AGGAGAGTCTGAAACAGAAAGCAAACCTTCTGAAAAAGAGGATTCTAAGT
TCAAAGTAAAAGCCACAAACCGAAAAAGCTGAATACACAATTCAAAACAG
AAAACTAATACACGTAGTTGGCAATCTAAATCAGTGAAATGAGAACCTGT
CCCTAATCAATCTACCAAAAGTAAAGAATTAGTAACTAAGTTTGACGGCA
GTCAGAGGCAACCCTAAAGCTCCTAGCTATCTACCTGAAGGTAGGGAACA
GCGTCATTCTTTCTCACAGGATTGCTCAACTTACTCGCGATCGTTCTCTT
AATTGCTGAGCATCAAGCATGGAGGCATTGATAGCGCTGACAGTTTTAAT
GAGGTAAACAAGAAAACTAAAATTGATGATTGCCCCCGCAACGAACGAAG
TGAGTGAGGAAGCAGTCATAGCTTCACGCATAGATATTGGACTGGAATCT
CGAAATTTTGTTGTTTTTGTGTGTTTTGTCGCGCAAGCATCGCCGTAGTT
AGTCTCTTCTGTAAATGTTCGGTTTTTTTTTCCGGGACGGCAGTTGCTAG
CCTAAAAACTTTTTCTTTTTTATAGCAGGCGCCGCGGGCATTTTACTCAG
CTTTTGACAGTAGATTCTATTCCGCTTGTAGAATTTTGCCCGATTGGTCA
ACATGCAGGAAATGGAATGGAGAAGTTTCTGGAAGTTTTTTTCTTGATTA
TGTGTAGAATCCCTTGCCTTGACTTTTTTTTAATCATTGCATTATTTTTT
TATATTTTTATTGTAACTTTTTTAATAGTATATTGTTTTGTAATACCAGG
GTTGGTAATGCATGAATTTTTTTTATATCTTTATAATGAATTTGAAGGTT
GTTGTTATATTTTTATACAGAATTATTGAATTACGTATTATTTATGATTT
TGTACAAATTTTATTTGATTGATTACAATTATACCACAGAACAATAATGA
ACAATGATTAA Coding sequence (CDS) from alignment at scaffold_82:240200..245360- >TCONS_00072718 ID=TCONS_00072718|Name=TCONS_00072718|organism=Clytia hemisphaerica|type=CDS|length=705bp|location=Sequence derived from alignment at scaffold_82:240200..245360- (Clytia hemisphaerica)
ATGTTCCTGTTAGTCGTTTTACTATCCCTGGTGTTGCATCCATGTCTCGT
CCTCCTGTTGCGACCATCACAAATGCATCCCGCTGTTCCTGTTGTCGTTA
GTTCCCATGTGGGTGTTAATGTTCCTGTTTGTCGTCCTGCTGTTAATGTT
TTAATCCCATCCATTTCATCAAACGTAACTACTGTTCCTGTGTGTCGTTC
TACTACTGTTCCTGCATCATCATCATCATCATCAATATCTAAAAAATCTT
CTTCATCGACTCCCAGACTGTCCAAATTTACAAGAGAAGAGGATATAAAA
CTATGTCGGGAAGCTATGACGGAGGAGTTGTTTAGTACAACAAAAGGGAC
ACCTGCCAGGGGTGATATTTATGAAAAATTATCCGTGAAAATGACCACAA
TAACTGGCAGGCCCTTAAAGAAACGAAATATACGTGAACGTTTATCAGAG
CTAATGACCGAATTTAAGAAAGATCAGAATGGTCAAATTAGAGGGAGTGG
TATGAATGATCCTGTTCCAGCCGAGCTGGAAGTGTTGTTACAGGATATGT
GTGACCTAGAAAAGGATGCAGAAGTTTTTTGTTTATGTATTTCTCGAAAA
AAGGACGACGACGGTAAAACACTATCTCAATTTGTTTTTCACCGAATATC
AACTTTGCAACCATGCCCGCCATCGTCCACCGCCCTCAAAAAAGGAAATA
CATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072718-exon-scaffold_82-1575043694:244716..245360 | TCONS_00072718-exon-scaffold_82-1575043694:244716..245360 | Clytia hemisphaerica | exon |
| TCONS_00072718-exon-scaffold_82-1575043694:240200..243577 | TCONS_00072718-exon-scaffold_82-1575043694:240200..243577 | Clytia hemisphaerica | exon |
| TCONS_00072718-exon-scaffold_82-1510915933:244716..245360 | TCONS_00072718-exon-scaffold_82-1510915933:244716..245360 | Clytia hemisphaerica | exon |
| TCONS_00072718-exon-scaffold_82-1510915933:240200..243577 | TCONS_00072718-exon-scaffold_82-1510915933:240200..243577 | Clytia hemisphaerica | exon |
| TCONS_00072718-exon-scaffold_82-1491911889:244716..245360 | TCONS_00072718-exon-scaffold_82-1491911889:244716..245360 | Clytia hemisphaerica | exon |
| TCONS_00072718-exon-scaffold_82-1491911889:240200..243577 | TCONS_00072718-exon-scaffold_82-1491911889:240200..243577 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:240200..245360 - |
Blast
The following BLAST results are available for this feature:
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