TCONS_00072716 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072716
Unique NameTCONS_00072716
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072716 ID=TCONS_00072716|Name=TCONS_00072716|organism=Clytia hemisphaerica|type=transcript|length=2312bp
AATTTTTGTCCATCCATCGCAACAAATCCTCCTATTACTTTTTTAACAGA
TTTCAATTCTCATTTTCCTCATAAAATACTCAatataaattcaattttta
atgtaCTCACCTCAGCCTACAAACAGTATATCCACAATATAATTTCTGCC
TAATCTTATCTTAACAAGCACACAAAGCTCAGTAAACAAATAAAACATTT
ATTGgaagttaaaaaatttaaatatctttttgaaagtcaaaaactCATAA
ATCTTTCCCAAAACAAATATCCTCATGAATCATTCTTATTACCCTCAGAT
GTACAACTCAAAAGATTTCGAATTCAATTTCACTATCAGTGacgaatata
ttttcaagatCACCACACCAACTACAACATCAACACATCAATCAAGACGC
TCTACCGTGGCAACCGAAACAACCGAAATCAAGTACCTCAAGCACACCAT
GTATCAATCAGAAACCTGGCATTTCAATCTATTTCAGATGAACCCACCAG
ACACTCACACGGAAGCATCAATGTCTACAAAAAGAAAACGCCAATCTAAA
TGCATCCCAACTTACAAAACCTACACCCcgaggaaaaaacaaaaatttat
accACCCTTCAAAGAAAATACTAATACATCACCGGAAACCGAAACTTCAA
ACCAACTGCTATCCACAACAACAACTCCAACAACAACACAAACAACAACA
CCCACAACAACCACAACTCCGACGACAACTCCAATAGTACCACATCCCAA
AACAACCCCAATGACTCAAACCCGCTGGCCACATCCTTTCCACAATATGC
TCCGCCATAAAAACCATATGTTACGAGGAATAACACGTGAGATACAGAAC
AAAGTCAATGAAGAAGCCCGCAAATATCTTTATAAACATTTATGAACACT
AACTACTGACCATCTTATAATCTCTTTTTGCTATCTTCTACCAATTTTAC
ATTTCTCAATTTTAGTATTCCCGGTTTCTATTGGTTCCCCGTGTCTCATG
TTTCATTGTTCCGTCTCATGTTGTCCTAATTTTGTTCTAATTTTCCTAAT
TTTAGTCTCAATTTTGACAAATCAGCGTCGTTCCCCTTAAATTGAGACAA
ATTAGTAAACATGAGACAGAGTCCTCCAATCATATATCggtatttttctt
aatttcctAATTTCCCAATTTCCCGTAATCGGATTGGTCGGAACCAaagt
aaattcaaaatggcCGTCGAAGCGGGAAGCGATATTTCAGCACATTTTTA
GCCAAGTTCAAAATATGCTATAATATCGCTTTGAAATGAGCTAAATACTT
GGAATTTGGACTGGAATTGGATAGATTTGGAATCTACACATTGAACTTTG
TATCTTCTGGAAGTTTGGTTGCTTTTGGTTCAGAATTGGAAAAGTTATGG
TTGTTTTTCATGTTGGTCACTTTTGGCGGGTCTTGTCATGTCACTTCTTT
TTGAGAAATGTTGCCCAGTACCCCAGTACCTTCAAGACTGCGAACGCTAT
GCCTTCCGAGATCCTATGTTTGGTAGTGTGGATAAAAGTTTTGAAGAATG
TCCACCAAGGAAATCAATACCAACAGCCAAGTGGTTCCTTTCCACATATG
CACACGACATCATGTATCGATCAAAGATACTCAAAGGATCAATCACATCA
ACGTTTGGGAAAATCTTGAAGATCGACTCAACAAAGAAGATCACTAAAAA
GCTCGCAGGATACATAGCAATGAAAAGATCTTTTCTCACTGGTACAAGTT
CTGCATTTCCACCATCTAAGAACAGAATCGTTGAAGCCATCTTCATAAAG
CTGACGAACCGACACCCCTTTTCAACAACCGTTaccaaatttggtcaaat
tcaCCTCCCGTCAACGATTGATCCTGCGAGCCAGATTGTTTAATTGTCCC
CTCCTgaaagagaaaaattctatCACTCTCTTCAATGTCAACCAAACACC
TTTGACCAAGTGGCTGAAAGACAAAACCAGAGTTGGAGAAGTTGCTCTCT
TGATGAAGGGTAAGCCAATTCCTCAACACATTGGGTTTGCCACCaccaag
aagaagaaaaatcttaACACCTTTGACTTGAGCCACAATGCTCAGAAACT
CAAAGCTAAACCAAAAGCAGTCCAACAAGCCATTTCTTCATCGTCATCAA
TCCAATTGCCATCCAACCCTATCATCCAATCGCCATCCAACCCTATCATC
CAACAGATACCACCACACTTGTTGATGCAGTTCCCACAACCACAACCCCA
ACAGCAATTTCTTTACGTTCCTATCAAACCAAAGCCTGTAGCACCGAGCC
ATTTCGTACCGC
Run BLAST on NCBI

protein sequence of TCONS_00072716-protein

>TCONS_00072716-protein ID=TCONS_00072716-protein|Name=TCONS_00072716-protein|organism=Clytia hemisphaerica|type=polypeptide|length=206bp
MNHSYYPQMYNSKDFEFNFTISDEYIFKITTPTTTSTHQSRRSTVATETT
EIKYLKHTMYQSETWHFNLFQMNPPDTHTEASMSTKRKRQSKCIPTYKTY
TPRKKQKFIPPFKENTNTSPETETSNQLLSTTTTPTTTQTTTPTTTTTPT
TTPIVPHPKTTPMTQTRWPHPFHNMLRHKNHMLRGITREIQNKVNEEARK
YLYKHL
Run BLAST on NCBI

transcript from alignment at scaffold_82:227931..230318-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072716 ID=TCONS_00072716|Name=TCONS_00072716|organism=Clytia hemisphaerica|type=transcript|length=2388bp|location=Sequence derived from alignment at scaffold_82:227931..230318- (Clytia hemisphaerica)
AATTTTTGTCCATCCATCGCAACAAATCCTCCTATTACTTTTTTAACAGA
TTTCAATTCTCATTTTCCTCATAAAATACTCAATATAAATTCAATTTTTA
ATGTACTCACCTCAGCCTACAAACAGTATATCCACAATATAATTTCTGCC
TAATCTTATCTTAACAAGCACACAAAGCTCAGTAAACAAATAAAACATTT
ATTGGAAGTTAAAAAATTTAAATATCTTTTTGAAAGTCAAAAACTCATAA
ATCTTTCCCAAAACAAATATCCTCATGAATCATTCTTATTACCCTCAGAT
GTACAACTCAAAAGATTTCGAATTCAATTTCACTATCAGTGACGAATATA
TTTTCAAGATCACCACACCAACTACAACATCAACACATCAATCAAGACGC
TCTACCGTGGCAACCGAAACAACCGAAATCAAGTACCTCAAGCACACCAT
GTATCAATCAGAAACCTGGCATTTCAATCTATTTCAGATGAACCCACCAG
ACACTCACACGGAAGCATCAATGTCTACAAAAAGAAAACGCCAATCTAAA
TGCATCCCAACTTACAAAACCTACACCCCGAGGAAAAAACAAAAATTTAT
ACCACCCTTCAAAGAAAATACTAATACATCACCGGAAACCGAAACTTCAA
ACCAACTGCTATCCACAACAACAACTCCAACAACAACACAAACAACAACA
CCCACAACAACCACAACTCCGACANCTATCCACAACAACAACAACAACAC
AAACAACAACACCCACAACAACAACAACCACAACAACAACAACTCAGACG
ACAACTCCAATAGTACCACATCCCAAAACAACCCCAATGACTCAAACCCG
CTGGCCACATCCTTTCCACAATATGCTCCGCCATAAAAACCATATGTTAC
GAGGAATAACACGTGAGATACAGAACAAAGTCAATGAAGAAGCCCGCAAA
TATCTTTATAAACATTTATGAACACTAACTACTGACCATCTTATAATCTC
TTTTTGCTATCTTCTACCAATTTTACATTTCTCAATTTTAGTATTCCCGG
TTTCTATTGGTTCCCCGTGTCTCATGTTTCATTGTTCCGTCTCATGTTGT
CCTAATTTTGTTCTAATTTTCCTAATTTTAGTCTCAATTTTGACAAATCA
GCGTCGTTCCCCTTAAATTGAGACAAATTAGTAAACATGAGACAGAGTCC
TCCAATCATATATCGGTATTTTTCTTAATTTCCTAATTTCCCAATTTCCC
GTAATCGGATTGGTCGGAACCAAAGTAAATTCAAAATGGCCGTCGAAGCG
GGAAGCGATATTTCAGCACATTTTTAGCCAAGTTCAAAATATGCTATAAT
ATCGCTTTGAAATGAGCTAAATACTTGGAATTTGGACTGGAATTGGATAG
ATTTGGAATCTACACATTGAACTTTGTATCTTCTGGAAGTTTGGTTGCTT
TTGGTTCAGAATTGGAAAAGTTATGGTTGTTTTTCATGTTGGTCACTTTT
GGCGGGTCTTGTCATGTCACTTCTTTTTGAGAAATGTTGCCCAGTACCCC
AGTACCTTCAAGACTGCGAACGCTATGCCTTCCGAGATCCTATGTTTGGT
AGTGTGGATAAAAGTTTTGAAGAATGTCCACCAAGGAAATCAATACCAAC
AGCCAAGTGGTTCCTTTCCACATATGCACACGACATCATGTATCGATCAA
AGATACTCAAAGGATCAATCACATCAACGTTTGGGAAAATCTTGAAGATC
GACTCAACAAAGAAGATCACTAAAAAGCTCGCAGGATACATAGCAATGAA
AAGATCTTTTCTCACTGGTACAAGTTCTGCATTTCCACCATCTAAGAACA
GAATCGTTGAAGCCATCTTCATAAAGCTGACGAACCGACACCCCTTTTCA
ACAACCGTTACCAAATTTGGTCAAATTCACCTCCCGTCAACGATTGATCC
TGCGAGCCAGATTGTTTAATTGTCCCCTCCTGAAAGAGAAAAATTCTATC
ACTCTCTTCAATGTCAACCAAACACCTTTGACCAAGTGGCTGAAAGACAA
AACCAGAGTTGGAGAAGTTGCTCTCTTGATGAAGGGTAAGCCAATTCCTC
AACACATTGGGTTTGCCACCACCAAGAAGAAGAAAAATCTTAACACCTTT
GACTTGAGCCACAATGCTCAGAAACTCAAAGCTAAACCAAAAGCAGTCCA
ACAAGCCATTTCTTCATCGTCATCAATCCAATTGCCATCCAACCCTATCA
TCCAATCGCCATCCAACCCTATCATCCAACAGATACCACCACACTTGTTG
ATGCAGTTCCCACAACCACAACCCCAACAGCAATTTCTTTACGTTCCTAT
CAAACCAAAGCCTGTAGCACCGAGCCATTTCGTACCGC

Coding sequence (CDS) from alignment at scaffold_82:227931..230318-

>TCONS_00072716 ID=TCONS_00072716|Name=TCONS_00072716|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_82:227931..230318- (Clytia hemisphaerica)
GACAACTCCAATAGTACCACATCCCAAAACAACCCCAATGACTCAAACCC
GCTGGCCACATCCTTTCCACAATATGCTCCGCCATAAAAACCATATGTTA
CGAGGAATAACACGTGAGATACAGAACAAAGTCAATGAAGAAGCCCGCAA
ATATCTTTATAAACATTTATGAATGAATCATTCTTATTACCCTCAGATGT
ACAACTCAAAAGATTTCGAATTCAATTTCACTATCAGTGACGAATATATT
TTCAAGATCACCACACCAACTACAACATCAACACATCAATCAAGACGCTC
TACCGTGGCAACCGAAACAACCGAAATCAAGTACCTCAAGCACACCATGT
ATCAATCAGAAACCTGGCATTTCAATCTATTTCAGATGAACCCACCAGAC
ACTCACACGGAAGCATCAATGTCTACAAAAAGAAAACGCCAATCTAAATG
CATCCCAACTTACAAAACCTACACCCCGAGGAAAAAACAAAAATTTATAC
CACCCTTCAAAGAAAATACTAATACATCACCGGAAACCGAAACTTCAAAC
CAACTGCTATCCACAACAACAACTCCAACAACAACACAAACAACAACACC
CACAACAACCACAACTCCGACGACAACTCCAATAGTACCACATCCCAAAA
CAACCCCAATGACTCAAACCCGCTGGCCACATCCTTTCCACAATATGCTC
CGCCATAAAAACCATATGTTACGAGGAATAACACGTGAGATACAGAACAA
AGTCAATGAAGAAGCCCGCAAATATCTTTATAAACATTTATGAATGAATC
ATTCTTATTACCCTCAGATGTACAACTCAAAAGATTTCGAATTCAATTTC
ACTATCAGTGACGAATATATTTTCAAGATCACCACACCAACTACAACATC
AACACATCAATCAAGACGCTCTACCGTGGCAACCGAAACAACCGAAATCA
AGTACCTCAAGCACACCATGTATCAATCAGAAACCTGGCATTTCAATCTA
TTTCAGATGAACCCACCAGACACTCACACGGAAGCATCAATGTCTACAAA
AAGAAAACGCCAATCTAAATGCATCCCAACTTACAAAACCTACACCCCGA
GGAAAAAACAAAAATTTATACCACCCTTCAAAGAAAATACTAATACATCA
CCGGAAACCGAAACTTCAAACCAACTGCTATCCACAACAACAACTCCAAC
AACAACACAAACAACAACACCCACAACAACCACAACTCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045136XLOC_045136Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072716-proteinTCONS_00072716-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072716-exon-scaffold_82-1575043694:229596..230318TCONS_00072716-exon-scaffold_82-1575043694:229596..230318Clytia hemisphaericaexon
TCONS_00072716-exon-scaffold_82-1575043694:227931..229519TCONS_00072716-exon-scaffold_82-1575043694:227931..229519Clytia hemisphaericaexon
TCONS_00072716-exon-scaffold_82-1510915933:229596..230318TCONS_00072716-exon-scaffold_82-1510915933:229596..230318Clytia hemisphaericaexon
TCONS_00072716-exon-scaffold_82-1510915933:227931..229519TCONS_00072716-exon-scaffold_82-1510915933:227931..229519Clytia hemisphaericaexon
TCONS_00072716-exon-scaffold_82-1491911889:229596..230318TCONS_00072716-exon-scaffold_82-1491911889:229596..230318Clytia hemisphaericaexon
TCONS_00072716-exon-scaffold_82-1491911889:227931..229519TCONS_00072716-exon-scaffold_82-1491911889:227931..229519Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:227931..230318 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.127197	0.016451	0.180226	0.219609	0.295753	0.14382	0.130135	0.182746	0.0426482	0.0352178	0	0.0786476	0.0224395	0	0.00957938	0.0102801	0.08865	0.0389415	0.1076	0.0562976	0.0677657	0.0954708	0	0.070342	0.253577	0.226311	0.115661	0	0.0561734	0.0953863
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072716 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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