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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=transcript|length=789bp
CAAGGAAGCAGCAATTAGCAATCTTTAAAATGAGCTCTTGTATATCCTCC
CAATGGCATATAGTACGGAAATGAGAGACACTGACAAGTCTTATTTTTGC
ATATTAAAGTCGAGACTTCCTTGTCTCATTGCTGTATAAAAAGTCAGAAT
TTTTGACTTCCAAAATCATTCAACTTGCTCAAGTAAGCAAGACAATCAAC
AGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGC
AGTGCATTGTACGGAAGAGAGCGAACAACAAGACAATGCTATCGAcgatc
aacaacaacaagatgAAGAAGACGACCAATCGCAAGACATGATGACTTCA
TCACAAGATGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGA
AGtcaaagatgaagaagCAGAACTGAACGATCCAAAACCATTGCTATGGC
TACTACGTCGCCGACGAAGACATCGAAGACGACACGGTTTCCGAAGACGA
TTTGGTTTCCGAAGACGATTTGGTTTCCGAAGACGTCGCCCTTATTACCC
GGGTGGATATCCATACGGAGGTGGTTACCCATACGGCAGATACCCTTACG
GACCTGGCGGACGTCCATACCCTCACAACAAGCGCTATGGAAAATAATTC
ATCTCACAACATGACTTTGATATTGTAATTCTCACGGGGAATGGTGTTTG
GGaacttatttttttgtaattttaggaAAACCTTTTTTAGTTACAGTACT
CATACTCGAAATATATCAttatttttcgaagaaaaaata Run BLAST on NCBI protein sequence of TCONS_00072715-protein >TCONS_00072715-protein ID=TCONS_00072715-protein|Name=TCONS_00072715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MKIWKALLLLALCVYAVHCTEESEQQDNAIDDQQQQDEEDDQSQDMMTSS
QDEEDIVEQDESSLDEVKDEEAELNDPKPLLWLLRRRRRHRRRHGFRRRF
GFRRRFGFRRRRPYYPGGYPYGGGYPYGRYPYGPGGRPYPHNKRYGK Run BLAST on NCBI transcript from alignment at scaffold_82:170694..171981- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=transcript|length=1288bp|location=Sequence derived from alignment at scaffold_82:170694..171981- (Clytia hemisphaerica)
CAAGGAAGCAGCAATTAGCAATCTTTAAAATGAGCTCTTGTATATCCTCC
CAATGGCATATAGTACGGAAATGAGAGACACTGACAAGTCTTATTTTTGC
ATATTAAAGTCGAGACTTCCTTGTCTCATTGCTGTATAAAAAGTCAGAAT
TTTTGACTTCCAAAATCATTCAACTTGCTCAAGTAAGCAAGACAATCAAC
AGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGC
AGTGCATTGTAAGTTTTACAATTTATTTCACCTTCCAAATCGAATTTTTG
TAACTTATCGTTATCAGAACAGATATCATCTCAAGGCAAAGAGAATGAAT
ATAATTTAGTAATTTCGGATCTTTTTGTCTATATTTGATAAATCATGTTT
GTCGTAATAATAATTTTCTTAACAATTTTTGTGTTCAGGTACGGAAGAGA
GCGAACAACAAGACAATGCTATCGACGATCAACAACAACAAGATGAAGAA
GACGACCAATCGCAAGACATGATGACTTCATCACAAGATGAAGAAGATAT
CGTGGAGCAAGATGAAAGCTCATTGGACGAAGTCAAAGATGAAGAAGGTA
TGTTGTAAATCCTATAATCCATTGGATGGGTTTTTTTGCTCTGTTTCATC
TTTATTCTATTTTACCTGGTTTCTAGGCCCTCTTTACATATTCACTTGCT
TTCTCTACTTATATCAGACTTAGATTACAGCTTAAGGATCAGTTTGGCTT
TTGTCTTCTATAGAATCTGAATCTTAAATCATTCTTCTTTCTTGGAAGTG
ATTAGAAATGATCTTTTTACTGGTCGGTGTCCAGCACATATGTTATGCGA
GAGAATTTATTTTATGATTATTGTGAAATCTGACTTCAAAAATTTGTTGA
AATTATTTCAATACAGCAGAACTGAACGATCCAAAACCATTGCTATGGCT
ACTACGTCGCCGACGAAGACATCGAAGACGACACGGTTTCCGAAGACGAT
TTGGTTTCCGAAGACGATTTGGTTTCCGAAGACGTCGCCCTTATTACCCG
GGTGGATATCCATACGGAGGTGGTTACCCATACGGCAGATACCCTTACGG
ACCTGGCGGACGTCCATACCCTCACAACAAGCGCTATGGAAAATAATTCA
TCTCACAACATGACTTTGATATTGTAATTCTCACGGGGAATGGTGTTTGG
GAACTTATTTTTTTGTAATTTTAGGAAAACCTTTTTTAGTTACAGTACTC
ATACTCGAAATATATCATTATTTTTCGAAGAAAAAATA Coding sequence (CDS) from alignment at scaffold_82:170694..171981- >TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_82:170694..171981- (Clytia hemisphaerica)
CAGAACTGAACGATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGA
AGACATCGAAGACGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACG
ATTTGGTTTCCGAAGACGTCGCCCTTATTACCCGGGTGGATATCCATACG
GAGGTGGTTACCCATACGGCAGATACCCTTACGGACCTGGCGGACGTCCA
TACCCTCACAACAAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAA
CAAGACAATGCTATCGACGATCAACAACAACAAGATGAAGAAGACGACCA
ATCGCAAGACATGATGACTTCATCACAAGATGAAGAAGATATCGTGGAGC
AAGATGAAAGCTCATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTG
GAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCAGTGCATTCAGAAC
TGAACGATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGAAGACAT
CGAAGACGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACGATTTGG
TTTCCGAAGACGTCGCCCTTATTACCCGGGTGGATATCCATACGGAGGTG
GTTACCCATACGGCAGATACCCTTACGGACCTGGCGGACGTCCATACCCT
CACAACAAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAACAAGAC
AATGCTATCGACGATCAACAACAACAAGATGAAGAAGACGACCAATCGCA
AGACATGATGACTTCATCACAAGATGAAGAAGATATCGTGGAGCAAGATG
AAAGCTCATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTGGAAAGC
TTTGCTGCTTTTGGCACTTTGTGTCTACGCAGTGCATTCAGAACTGAACG
ATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGAAGACATCGAAGA
CGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACGATTTGGTTTCCG
AAGACGTCGCCCTTATTACCCGGGTGGATATCCATACGGAGGTGGTTACC
CATACGGCAGATACCCTTACGGACCTGGCGGACGTCCATACCCTCACAAC
AAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAACAAGACAATGCT
ATCGACGATCAACAACAACAAGATGAAGAAGACGACCAATCGCAAGACAT
GATGACTTCATCACAAGATGAAGAAGATATCGTGGAGCAAGATGAAAGCT
CATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTGGAAAGCTTTGCT
GCTTTTGGCACTTTGTGTCTACGCAGTGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072715-exon-scaffold_82-1575043694:171724..171981 | TCONS_00072715-exon-scaffold_82-1575043694:171724..171981 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1575043694:171385..171543 | TCONS_00072715-exon-scaffold_82-1575043694:171385..171543 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1575043694:170694..171065 | TCONS_00072715-exon-scaffold_82-1575043694:170694..171065 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1510915933:171724..171981 | TCONS_00072715-exon-scaffold_82-1510915933:171724..171981 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1510915933:171385..171543 | TCONS_00072715-exon-scaffold_82-1510915933:171385..171543 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1510915933:170694..171065 | TCONS_00072715-exon-scaffold_82-1510915933:170694..171065 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1491911889:171724..171981 | TCONS_00072715-exon-scaffold_82-1491911889:171724..171981 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1491911889:171385..171543 | TCONS_00072715-exon-scaffold_82-1491911889:171385..171543 | Clytia hemisphaerica | exon |
| TCONS_00072715-exon-scaffold_82-1491911889:170694..171065 | TCONS_00072715-exon-scaffold_82-1491911889:170694..171065 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:170694..171981 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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