TCONS_00072715 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072715
Unique NameTCONS_00072715
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=transcript|length=789bp
CAAGGAAGCAGCAATTAGCAATCTTTAAAATGAGCTCTTGTATATCCTCC
CAATGGCATATAGTACGGAAATGAGAGACACTGACAAGTCTTATTTTTGC
ATATTAAAGTCGAGACTTCCTTGTCTCATTGCTGTATAAAAAGTCAGAAT
TTTTGACTTCCAAAATCATTCAACTTGCTCAAGTAAGCAAGACAATCAAC
AGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGC
AGTGCATTGTACGGAAGAGAGCGAACAACAAGACAATGCTATCGAcgatc
aacaacaacaagatgAAGAAGACGACCAATCGCAAGACATGATGACTTCA
TCACAAGATGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGA
AGtcaaagatgaagaagCAGAACTGAACGATCCAAAACCATTGCTATGGC
TACTACGTCGCCGACGAAGACATCGAAGACGACACGGTTTCCGAAGACGA
TTTGGTTTCCGAAGACGATTTGGTTTCCGAAGACGTCGCCCTTATTACCC
GGGTGGATATCCATACGGAGGTGGTTACCCATACGGCAGATACCCTTACG
GACCTGGCGGACGTCCATACCCTCACAACAAGCGCTATGGAAAATAATTC
ATCTCACAACATGACTTTGATATTGTAATTCTCACGGGGAATGGTGTTTG
GGaacttatttttttgtaattttaggaAAACCTTTTTTAGTTACAGTACT
CATACTCGAAATATATCAttatttttcgaagaaaaaata
Run BLAST on NCBI

protein sequence of TCONS_00072715-protein

>TCONS_00072715-protein ID=TCONS_00072715-protein|Name=TCONS_00072715-protein|organism=Clytia hemisphaerica|type=polypeptide|length=147bp
MKIWKALLLLALCVYAVHCTEESEQQDNAIDDQQQQDEEDDQSQDMMTSS
QDEEDIVEQDESSLDEVKDEEAELNDPKPLLWLLRRRRRHRRRHGFRRRF
GFRRRFGFRRRRPYYPGGYPYGGGYPYGRYPYGPGGRPYPHNKRYGK
Run BLAST on NCBI

transcript from alignment at scaffold_82:170694..171981-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=transcript|length=1288bp|location=Sequence derived from alignment at scaffold_82:170694..171981- (Clytia hemisphaerica)
CAAGGAAGCAGCAATTAGCAATCTTTAAAATGAGCTCTTGTATATCCTCC
CAATGGCATATAGTACGGAAATGAGAGACACTGACAAGTCTTATTTTTGC
ATATTAAAGTCGAGACTTCCTTGTCTCATTGCTGTATAAAAAGTCAGAAT
TTTTGACTTCCAAAATCATTCAACTTGCTCAAGTAAGCAAGACAATCAAC
AGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGC
AGTGCATTGTAAGTTTTACAATTTATTTCACCTTCCAAATCGAATTTTTG
TAACTTATCGTTATCAGAACAGATATCATCTCAAGGCAAAGAGAATGAAT
ATAATTTAGTAATTTCGGATCTTTTTGTCTATATTTGATAAATCATGTTT
GTCGTAATAATAATTTTCTTAACAATTTTTGTGTTCAGGTACGGAAGAGA
GCGAACAACAAGACAATGCTATCGACGATCAACAACAACAAGATGAAGAA
GACGACCAATCGCAAGACATGATGACTTCATCACAAGATGAAGAAGATAT
CGTGGAGCAAGATGAAAGCTCATTGGACGAAGTCAAAGATGAAGAAGGTA
TGTTGTAAATCCTATAATCCATTGGATGGGTTTTTTTGCTCTGTTTCATC
TTTATTCTATTTTACCTGGTTTCTAGGCCCTCTTTACATATTCACTTGCT
TTCTCTACTTATATCAGACTTAGATTACAGCTTAAGGATCAGTTTGGCTT
TTGTCTTCTATAGAATCTGAATCTTAAATCATTCTTCTTTCTTGGAAGTG
ATTAGAAATGATCTTTTTACTGGTCGGTGTCCAGCACATATGTTATGCGA
GAGAATTTATTTTATGATTATTGTGAAATCTGACTTCAAAAATTTGTTGA
AATTATTTCAATACAGCAGAACTGAACGATCCAAAACCATTGCTATGGCT
ACTACGTCGCCGACGAAGACATCGAAGACGACACGGTTTCCGAAGACGAT
TTGGTTTCCGAAGACGATTTGGTTTCCGAAGACGTCGCCCTTATTACCCG
GGTGGATATCCATACGGAGGTGGTTACCCATACGGCAGATACCCTTACGG
ACCTGGCGGACGTCCATACCCTCACAACAAGCGCTATGGAAAATAATTCA
TCTCACAACATGACTTTGATATTGTAATTCTCACGGGGAATGGTGTTTGG
GAACTTATTTTTTTGTAATTTTAGGAAAACCTTTTTTAGTTACAGTACTC
ATACTCGAAATATATCATTATTTTTCGAAGAAAAAATA

Coding sequence (CDS) from alignment at scaffold_82:170694..171981-

>TCONS_00072715 ID=TCONS_00072715|Name=TCONS_00072715|organism=Clytia hemisphaerica|type=CDS|length=1332bp|location=Sequence derived from alignment at scaffold_82:170694..171981- (Clytia hemisphaerica)
CAGAACTGAACGATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGA
AGACATCGAAGACGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACG
ATTTGGTTTCCGAAGACGTCGCCCTTATTACCCGGGTGGATATCCATACG
GAGGTGGTTACCCATACGGCAGATACCCTTACGGACCTGGCGGACGTCCA
TACCCTCACAACAAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAA
CAAGACAATGCTATCGACGATCAACAACAACAAGATGAAGAAGACGACCA
ATCGCAAGACATGATGACTTCATCACAAGATGAAGAAGATATCGTGGAGC
AAGATGAAAGCTCATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTG
GAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCAGTGCATTCAGAAC
TGAACGATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGAAGACAT
CGAAGACGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACGATTTGG
TTTCCGAAGACGTCGCCCTTATTACCCGGGTGGATATCCATACGGAGGTG
GTTACCCATACGGCAGATACCCTTACGGACCTGGCGGACGTCCATACCCT
CACAACAAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAACAAGAC
AATGCTATCGACGATCAACAACAACAAGATGAAGAAGACGACCAATCGCA
AGACATGATGACTTCATCACAAGATGAAGAAGATATCGTGGAGCAAGATG
AAAGCTCATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTGGAAAGC
TTTGCTGCTTTTGGCACTTTGTGTCTACGCAGTGCATTCAGAACTGAACG
ATCCAAAACCATTGCTATGGCTACTACGTCGCCGACGAAGACATCGAAGA
CGACACGGTTTCCGAAGACGATTTGGTTTCCGAAGACGATTTGGTTTCCG
AAGACGTCGCCCTTATTACCCGGGTGGATATCCATACGGAGGTGGTTACC
CATACGGCAGATACCCTTACGGACCTGGCGGACGTCCATACCCTCACAAC
AAGCGCTATGGAAAATAAGTACGGAAGAGAGCGAACAACAAGACAATGCT
ATCGACGATCAACAACAACAAGATGAAGAAGACGACCAATCGCAAGACAT
GATGACTTCATCACAAGATGAAGAAGATATCGTGGAGCAAGATGAAAGCT
CATTGGACGAAGTCAAAGATGAAGAAGATGAAGATTTGGAAAGCTTTGCT
GCTTTTGGCACTTTGTGTCTACGCAGTGCATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045135XLOC_045135Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072715-proteinTCONS_00072715-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072715-exon-scaffold_82-1575043694:171724..171981TCONS_00072715-exon-scaffold_82-1575043694:171724..171981Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1575043694:171385..171543TCONS_00072715-exon-scaffold_82-1575043694:171385..171543Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1575043694:170694..171065TCONS_00072715-exon-scaffold_82-1575043694:170694..171065Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1510915933:171724..171981TCONS_00072715-exon-scaffold_82-1510915933:171724..171981Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1510915933:171385..171543TCONS_00072715-exon-scaffold_82-1510915933:171385..171543Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1510915933:170694..171065TCONS_00072715-exon-scaffold_82-1510915933:170694..171065Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1491911889:171724..171981TCONS_00072715-exon-scaffold_82-1491911889:171724..171981Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1491911889:171385..171543TCONS_00072715-exon-scaffold_82-1491911889:171385..171543Clytia hemisphaericaexon
TCONS_00072715-exon-scaffold_82-1491911889:170694..171065TCONS_00072715-exon-scaffold_82-1491911889:170694..171065Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:170694..171981 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.34956	3.17201	2.56057	3.46818	1.89725	1.22867	2.18233	1.96833	579.937	393.663	43.1226	1659.84	8.49909	13.3665	2349.42	356.592	1.36434	2.03005	3.03072	1.12838	0.918922	1.02504	1.0446	1.17439	2.21854	1.19363	0.79162	1.25318	0.730846	0.395429
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072715 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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