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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072712 ID=TCONS_00072712|Name=TCONS_00072712|organism=Clytia hemisphaerica|type=transcript|length=1652bp
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGA
AAAAACTATGGATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCC
ATCCACGGTTTATCAAGAACCATCCACACAGATTCTCATCTTGAACGTAT
CTTCTGGATGATATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGG
TGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACT
GAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTT
GGAGGAGATAACGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATG
ATCTACATGGAGCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGT
TGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAA
CGCACAAGGCATGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTG
TGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAG
AATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGA
TGGCGAATTTTACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTA
ATCATAACGATTACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCAC
CACCACACTGAATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGA
TACGCTGAATACTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGA
AACGAGGCAATCCGCAATCATGCGAAGATAACTATTATAATAACAGTAAA
AATATATTCCCTGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACAC
TTGTATTCAATCACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAG
ATTATCTACCGACGCAGCTCCTTGAGAAATATTGGATGAATACAACATAC
GAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTA
TGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGG
TCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTAT
CCTGAACGAAATATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATG
GGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTT
TTTCTATTCTCTCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGT
GTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGA
GGCTGGTGATACTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTG
GAAGTAATAAGGGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAAT
TCAAAACCTACGTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGT
ACATAAGTGAATACACCGGCAGATTTTTCTAAATAATTATGACTATCAAA
GCACCCATATACGCGCGTTCTTCcttaaatcttttaaaaatctttataat
tg Run BLAST on NCBI transcript from alignment at scaffold_82:514874..516814+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072712 ID=TCONS_00072712|Name=TCONS_00072712|organism=Clytia hemisphaerica|type=transcript|length=1941bp|location=Sequence derived from alignment at scaffold_82:514874..516814+ (Clytia hemisphaerica)
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTG
AGTGAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttc
tgacACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAG
CAAAAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAG
CCGACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTC
GGTAATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaG
ATTGTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGG
ATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTT
ATCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGA
TATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTA
TTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGT
TACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAA
CGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGA
GCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCT
TCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCA
TGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCG
TGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCC
GTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTT
ACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGAT
TACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGA
ATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATA
CTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAAT
CCGCAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCC
TGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAAT
CACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCG
ACGCAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTA
TAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTG
CAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACA
GTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAA
TATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCA
TTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTC
TCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATG
CAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATA
CTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAG
GGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAATTCAAAACCTAC
GTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGTACATAAGTGAA
TACACCGGCAGATTTTTCTAAATAATTATGACTATCAAAGCACCCATATA
CGCGCGTTCTTCcttaaatcttttaaaaatctttataattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072712-exon-scaffold_82-1491911889:514874..514970 | TCONS_00072712-exon-scaffold_82-1491911889:514874..514970 | Clytia hemisphaerica | exon |
| TCONS_00072712-exon-scaffold_82-1510915933:514874..514970 | TCONS_00072712-exon-scaffold_82-1510915933:514874..514970 | Clytia hemisphaerica | exon |
| TCONS_00072712-exon-scaffold_82-1575043694:514874..514970 | TCONS_00072712-exon-scaffold_82-1575043694:514874..514970 | Clytia hemisphaerica | exon |
| TCONS_00072712-exon-scaffold_82-1491911889:515260..516814 | TCONS_00072712-exon-scaffold_82-1491911889:515260..516814 | Clytia hemisphaerica | exon |
| TCONS_00072712-exon-scaffold_82-1510915933:515260..516814 | TCONS_00072712-exon-scaffold_82-1510915933:515260..516814 | Clytia hemisphaerica | exon |
| TCONS_00072712-exon-scaffold_82-1575043694:515260..516814 | TCONS_00072712-exon-scaffold_82-1575043694:515260..516814 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:514874..516814 + |
Blast
The following BLAST results are available for this feature:
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