TCONS_00072712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072712
Unique NameTCONS_00072712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072712 ID=TCONS_00072712|Name=TCONS_00072712|organism=Clytia hemisphaerica|type=transcript|length=1652bp
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa
acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGAGA
AAAAACTATGGATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCC
ATCCACGGTTTATCAAGAACCATCCACACAGATTCTCATCTTGAACGTAT
CTTCTGGATGATATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGG
TGCAAAGCCTATTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACT
GAAAGTAGAGTTACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTT
GGAGGAGATAACGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATG
ATCTACATGGAGCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGT
TGGTGGGGGCTTCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAA
CGCACAAGGCATGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTG
TGAATTGTCCGTGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAG
AATTTCAAGCCGTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGA
TGGCGAATTTTACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTA
ATCATAACGATTACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCAC
CACCACACTGAATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGA
TACGCTGAATACTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGA
AACGAGGCAATCCGCAATCATGCGAAGATAACTATTATAATAACAGTAAA
AATATATTCCCTGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACAC
TTGTATTCAATCACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAG
ATTATCTACCGACGCAGCTCCTTGAGAAATATTGGATGAATACAACATAC
GAAGAGGTCTATAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTA
TGCTGACGGTGCAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGG
TCTCATCGACAGTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTAT
CCTGAACGAAATATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATG
GGAGGATTTCATTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTT
TTTCTATTCTCTCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGT
GTTTTCAAATGCAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGA
GGCTGGTGATACTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTG
GAAGTAATAAGGGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAAT
TCAAAACCTACGTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGT
ACATAAGTGAATACACCGGCAGATTTTTCTAAATAATTATGACTATCAAA
GCACCCATATACGCGCGTTCTTCcttaaatcttttaaaaatctttataat
tg
Run BLAST on NCBI

transcript from alignment at scaffold_82:514874..516814+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072712 ID=TCONS_00072712|Name=TCONS_00072712|organism=Clytia hemisphaerica|type=transcript|length=1941bp|location=Sequence derived from alignment at scaffold_82:514874..516814+ (Clytia hemisphaerica)
TAAAAAGCAAATATGAGCACAAGGAAAAGCACAAGAAAAAGCaccaaaaa acaaaacacaggAAATGAAGAGAATGATGAAGTCGACGATGTGATTGGTG AGTGAAGTTTCAACTTAATATCATTATAAACACttagattttaaattttc tgacACGAGCTAGTTTTGTAGGACAATACATAATCCTACATAACTGAAAG CAAAAAAAACTGTCTGTAAACAGTTAAAATGTTATCACAGATTGGGAAAG CCGACACATTTTATCGAGGTGTTGTTGCCTGAGTTTGCTTGAAGAATTTC GGTAATCACCCTTTATTAGCCAATGTccgtgaattaaaaaaaacactgaG ATTGTTATTCATTTTATATTCCTTACTTTTTCCCAGAGAAAAAACTATGG ATTCACGAGAAATCGAAAGAATATTCGTCCTCGTTATCCATCCACGGTTT ATCAAGAACCATCCACACAGATTCTCATCTTGAACGTATCTTCTGGATGA TATCCTTGATGTTGGCTGTTGGTATCGCCTTCTTAATGGTGCAAAGCCTA TTAATCAAGTTCTGGAATCAAGACGTGTACATTAATACTGAAAGTAGAGT TACCAGTAAGAATTATTTTCCGTCGGTCACTTTCTGTTTGGAGGAGATAA CGGTTAAAGATACTTATTGCGAGTATCCAGCCAATGATGATCTACATGGA GCACTTACGGGCCGTCCTGAAGAATGTACTACGGGTCGTTGGTGGGGGCT TCCAAAGTTGAGGATTCCCAATAATGTGTTTGAGCTGAACGCACAAGGCA TGATAAGTATTGTTACGTTACCTCTTCAGACTTTCTTTGTGAATTGTCCG TGGAAAGGTGTATGTCTCAATAAAGATATGGTGCAAAAGAATTTCAAGCC GTTGGTTGAAAATGAATTATGCTTAACATGGAATCCAGATGGCGAATTTT ACAACCTGAAGAATCGCCTTGAATTGAATGTGAAGATTAATCATAACGAT TACCGAGGGAAAGGAAAAGGATTTGTAGCTTATGTGCACCACCACACTGA ATCACCGATCTCATCCGAACGGAAAATTCCTCTCTCAGATACGCTGAATA CTGAAATCTCCTTTAAGAAGATCGTGAAGGTCAGAAAGAAACGAGGCAAT CCGCAATCATGCGAAGATAACTATTATAATAACAGTAAAAATATATTCCC TGGTCGATACACTGTTGAAGCGTGCCTTGATTCTTACACTTGTATTCAAT CACTGATGCTGTGCGGAGATTCAATGGACTTTTGTAAAGATTATCTACCG ACGCAGCTCCTTGAGAAATATTGGATGAATACAACATACGAAGAGGTCTA TAGCTGCATGAGGAAAAGCTACAATGAAGGCTTATTTTATGCTGACGGTG CAGTTTGTTTGCCGCCTTGTCAAGAGACGCAATATCAGGTCTCATCGACA GTTAGTGCACCAGGAACAAGTCTGGTGACTTTGATGTATCCTGAACGAAA TATTTACGAATACCAAGAAGAAAAGGAGGTTTACACATGGGAGGATTTCA TTGCAGGCATTGGTGGTATGGTTGGGTTGTTCTGTGGTTTTTCTATTCTC TCTATTGCTGAACTGTTCGTATATATTGGTTTGAAATGTGTTTTCAAATG CAGGGGTACTGCAAACCAAGGGACTGATGGTAATGTTGAGGCTGGTGATA CTATCAAAGGAAGACAATCAGCTATGAAGAATGAACTTGGAAGTAATAAG GGACATACAAATCCTGTTTTCAGTTAATTGAACTGTAATTCAAAACCTAC GTACACTTAATGTACTCACACGAAAGCACTAGTCGCCGTACATAAGTGAA TACACCGGCAGATTTTTCTAAATAATTATGACTATCAAAGCACCCATATA CGCGCGTTCTTCcttaaatcttttaaaaatctttataattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045132XLOC_045132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072712-exon-scaffold_82-1491911889:514874..514970TCONS_00072712-exon-scaffold_82-1491911889:514874..514970Clytia hemisphaericaexon
TCONS_00072712-exon-scaffold_82-1510915933:514874..514970TCONS_00072712-exon-scaffold_82-1510915933:514874..514970Clytia hemisphaericaexon
TCONS_00072712-exon-scaffold_82-1575043694:514874..514970TCONS_00072712-exon-scaffold_82-1575043694:514874..514970Clytia hemisphaericaexon
TCONS_00072712-exon-scaffold_82-1491911889:515260..516814TCONS_00072712-exon-scaffold_82-1491911889:515260..516814Clytia hemisphaericaexon
TCONS_00072712-exon-scaffold_82-1510915933:515260..516814TCONS_00072712-exon-scaffold_82-1510915933:515260..516814Clytia hemisphaericaexon
TCONS_00072712-exon-scaffold_82-1575043694:515260..516814TCONS_00072712-exon-scaffold_82-1575043694:515260..516814Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:514874..516814 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0245861 0.0239753 0.0556753 0.0272348 0 0 0 0 0 0 0 0 1.37352 1.24811 0 0 0 0 4.50839 5.20998 0.0475425 0.0347843 0.014095 0.0384431 0.0923895 0.0235587 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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