TCONS_00072709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072709
Unique NameTCONS_00072709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1939

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072709 ID=TCONS_00072709|Name=TCONS_00072709|organism=Clytia hemisphaerica|type=transcript|length=1939bp
GAATTTGTTTTTAACAACACAAGGAAGAAAGCTAGGCGTTGATTAAGACC
TTCATTAGACTTTGCTTCGAAAGATCTTTTCAAAATCGTCTACTTTTTGt
tcattcattttcttcttcaacaaAACTATGAGAGAGTGTATTTCAATCCA
CGTTGGACAAGCTGGTTGTCAAATCGGTAACTCATGCTGGGAATTGTATT
GTTTGGAACATGGAATCTCCCCCGATGGAACAGCTACCAATGAAATCACT
GGAGATGAATCGTTCAGTACTTTCTTTAGCGAAACGGGTGCTGGAAGACA
TGTTCCAAGAGCTGTTTTCGTTGATTTGGAACCATCGGTTATTGATGAAA
TTCGATGCAGTACCTACAAATCCCTCTTCCATCCTGACCAAATGATCGCT
GGTAAAGAAGACGCCGCTAACAATTACGCCAGAGGTCATTACACCGTCGG
TAAAGAGTACATCGACCGAACTTTGGATCATATCCGTAAATTGGCGGATC
AGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCATTCCTTTGGTGGAGGT
ACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAGATTATCCATTGATTT
TGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATCCAGCACCACAAGTCT
CCACAGCTGTTGTTGAACCATACAACTCTGTCTTGACCACACATACCACT
TTGGAGCACTCCGATTGCACTTTCATGGTGGATAATGAAGCTATCTATGA
TATCTGTCGCAAGAATCTGGACGTCGAGCGTCCATCATATCACAATCTGA
ACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACTGCATCTCTTAGATTT
GACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCC
ATACCCTAGAATCCATTTCCCGATGGCCACTTATGCTCCTTTAGTTTCTG
CTGAGAAAGCATACCACGAAAATCATTCAGTTCAAGAAATCACAAATGCT
TGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGATCCAAGACACGGCAA
ATACATGTCTTGTTGTCTTCTCTACCGTGGAGATGTGGTCCCAAAAGATG
TCAATGCTTCCATCTCTGCCTTGAAAACTAAACGCACTATTCAATTCGTC
GATTGGTGTCCAACCGGATTCAAAATCGGAATCAATTACCAGCCACCAAC
TATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCAGAGCTGTTTGCATGT
TGTCTAACACAACTGCCATTGCTGAAGCATGGGCTCGTCTTGATCATAAA
TTCGATTTAATGTACGCAAAACGTGCTTTTGTGCACTGGTATGTCGGAGA
AGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTTAGCTGCTC
TTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATTGCGAAGAC
GAAGAAGATGAAGATTATTGAGGCTAGAAATTTGTAGAAAAGAACTAtta
gaaattaataaaatgGAAGAGCTTTCGACAATATTTGTTTATCAAGATTG
ACCAAATTTTAATTACAGAGTAATCTAATTGGATGAGTTGTTTTTATTCC
AGGTATTTTGGAATCATTGATTAAATTATTGGTTGCGTTTAAAATTATCT
TTTAGTAAATTTTTCTCTCGTGTGCATTGTTAactatttttgaatattta
aacatattaactttctttatttttgaaatctaatgACATTTTAGCAAGTT
ATActttttatctaaaaagctaTTTTTTCTTTGTCTAGTGTCTTCGTTAA
AATCTTTCGCTCCGAAGAAATAAATTAGACAAGAAACTAATCTCAGCAAG
TCCAAAATTCACTCAAAACAGGTGTAATAGAAGTTACGACAAGTGGAAAA
TTCTATTTCTCCTAGTTGAAAAACCTCCCGAGGGGAAAC
Run BLAST on NCBI

transcript from alignment at scaffold_82:500867..506111+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072709 ID=TCONS_00072709|Name=TCONS_00072709|organism=Clytia hemisphaerica|type=transcript|length=5245bp|location=Sequence derived from alignment at scaffold_82:500867..506111+ (Clytia hemisphaerica)
GAATTTGTTTTTAACAACACAAGGAAGAAAGCTAGGCGTTGATTAAGACC TTCATTAGACTTTGCTTCGAAAGATCTTTTCAAAATCGTCTACTTTTTGt tcattcattttcttcttcaacaaAACTATGGTAAGTAATCATCATCTACA CttgaacacccccttctcacagacctggtaggtGTTCACAGCCGATGGGG ataaaataacggactgaaaatcggtggggattgatattcccatggaATAT GGGAATTGggtggggatttgaattccattgttttcaagtgaGAAAATTCA ATGAAGATAGAAGAAATAGCACAACATTTTGCGGTGAGGATTTGTTGTTT GATTATTTCCAACAGGGAAAAAACAAGAGTACGATTTTACACTGGaacaa ttttttggccaatcttTTCAGTTGGAGGGATTACCACAagttctgtgaga aggggtatACTTGACTCCCTCTTACCAAGTTCgatcttcaaaataaagaa ctaagaaactttcaaaattataGAAACGTTAGATAatctggaaaggctta tgatgacgtcatcacaaaactttcaacctccataacttttaataggaaga ttttcaaggcatgttttatacctcaattttcatcagcatttcatgctctt tccgctgaaactatcagattttgaatattttcaaaaaaataaaattttgc ccagctacctgatgacgtcatctggcaggtggccaggtaggaaaatttgg tgttactgtttaaaattaagtttcatACCCTCTAAGGACCATCTGTGCCA aattatcaccatctgaagtatttttgtgctaacagacctcactaatttga aattttttttagtaaTAGAAAAATTATTCGATTTACAGAGACTTTAAGGC TGTCCAAAGTTTACCGTTTTTCAACTCTAAGGGGATGGCTTTTGAGGGCT ATTTAAAAACTTAAGAATTAGGTGTGTTTTAGGTACATATcatttttcgt tcttttttatCCTCGCTGAATTACAATACTTTTCGCCTAAAAAGAACGGA GAATAACAATCTTGTCAAAGGAGTAAAAAGTCCTTTTTGCTTTTCATTAT AAGATTCACTAAAAAAGATCCTAGATGACCCCTTCCTAggtaaatcttta aaattacATGAAATGGATCTCGATGTAAGTCAGGTTAATAATAGGCAAGG ATTAAGACCTCCTTTCCAACTGGGTTCTGTAATTTTATACAAAGAATAGC AAACAAAGTAAAATTAGAATTAGAGTACCATGATTTTTTACACTCAGTTT CTTAGCGAGGTCCTGCTGGTAACCATAGAGtgattaaaaaatcttttttt catatGCGTCACTACCGATTAAATATagtcgaaattaaaaaaaatttatt ttgctgTCCTTACTGCGATTTTTTTGCTCTTGCTTTGCAGAAGAAACAAC GTTGAAAATAAGATCTTGGAGGTTGAAAAGATGGtaaacttatttcttta aaattgtttGATCCAACTTCCAAAAGAAAACCCAGAAAGAACGGGTACGG GGAATATATATAATCTCCAATATGGCAATTTACGAGATATACTGTAGACC TTAAAATTCTGACGAAGTATTACTTTGACAAGACTTATCGTGAGGCATTG AGAGATTTTAgaagtatatttaaaaaaaaaaaaaaagactttagcTAGAC ATTACATTACGTGTCAATATGGCAAACGCAAATTAATTTGCGGATATTTT AGTGAATAGCATTTCATAATTACAAAAACAATTTCGTTTCTCTCTCAATC GGATGCAATTCAGTTGTAAAGAGTAATTTACGTCTGTACAACCCATTTCT TTCAAAGACATTTGAATTGTGTAAGACGAAAAACAAAACCCAGAATAAAC GCAATAGCTTGTAGAACCAATGCAAAAAGACCTAGAGGTCATCAAAAATG GGGATCATTCCTTTCCCTCAGTATCTTAATCAACGTGGTTTTGCGACTGG AGCTATTCATCCCTTATGCTAAAATCATTATAAAGTGATTGAAGCCCGAT TGAAGGGGCTACAGAGGAATCTTCAATCTTTCTCAACTCAAGCTAGCAAA AGTTCAGCattaagattttaaattttgtgtgAAAATGCTACATAAAGTTT TAAAGTTAATGAATAGTTCAATTGGATTTAATCGTTTGATTCCGTTCCCA ATTTTTAGAGAGAGTGTATTTCAATCCACGTTGGACAAGCTGGTTGTCAA ATCGGTAACTCATGCTGGGAATTGTATTGTTTGGAACATGGAATCTCCCC CGATGGAACAGCTACCAATGAAATCACTGGAGATGAATCGTTCAGTACTT TCTTTAGCGAAACGGGTGCTGGAAGACATGTTCCAAGAGCTGTTTTCGTT GATTTGGAACCATCGGTTATTGGTAAGATTCTTTGCAGCAAACATCAAAA CCTCGTCTATCTAAATTAGCCTATCTCAAATGATTCACTCATCTGTTACA TGCTTTTTTATTCGAATTCAATTGATTTGAGGAAATTCATGAACTTTCTT CTATTGCTGTTGATTTTGTAAAACTCAATTCGTAAAAGAGTGTTCAAACA TTAAAAGTTGAGTACTATGGTGACGTAGAAAAATatcatgtactgaaaac acGAATCCTATAAAATGTCAAGGTGAACTTTGAGCTGACATAGTTTGGTG TCTGAAATTGACTGGAATTGACTTTTAGAGATACATCCTTTCAATTCAAC TAACACTTTATTCAAAGTTGTTTGATACTTTAGATGCGGATCAGAATGCA ACATGCAAAATAGTTCTTCTGTTCAAACACAAGCAGAAAGACTTTTTATT GAAGGACCTCAGATTTTCAGAAATCTAGAGGAAGAACATAGGTGGTTTTA GACCCTGTAGAACTTATCAgatatttgtaattgtaattcattgttttttt aacGAGCGTTACGCTCCTTCGCATGTTCCCGACGTACTCGCTCTTGAATA TTGTATCATTGTTTGATTATATATTGTAGTTGAACACCATTTAAGAGTGC TCGATAACTGTGTAGAGCCAttcataaatttatttcaagATTTCACTGTT AAAAAAGTACATTACTTCGAGTTTCATGCTTACGGCAAATCATCAGACGT ACAAATAAAAACACTTTCCTATATTTATTTACAGATGAAATTCGATGCAG TACCTACAAATCCCTCTTCCATCCTGACCAAATGATCGCTGGTAAAGAAG ACGCCGCTAACAATTACGCCAGAGGTCATTACACCGTCGGTAAAGAGTAC ATCGACCGAACTTTGGATCATATCCGTAAATTGGCGGATCAGTGCACTGG TCTTCAAGGATTCTTGTTGTTCCATTCCTTTGGTGGAGGTACCGGATCTG GTTTCTCGTCTCTCCTCTTGGAAAGATTATCCATTGATTTTGGTAAAAAA GCCAAATTGGAATTTGCTGTTTATCCAGCACCACAAGTCTCCACAGCTGT TGTTGAACCATACAACTCTGTCTTGACCACACATACCACTTTGGAGCACT CCGATTGCACTTTCATGGTGGATAATGAAGCTATCTATGATATCTGTCGC AAGAATCTGGACGTCGAGCGTCCATCATATCACAATCTGAACCGAATGAT CAGTCAAGTTGTTTCCTCAGTCACTGCATCTCTTAGATTTGACGGCTCCT TGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCCATACCCTAGA ATCCATTTCCCGATGGCCACTTATGCTCCTTTAGTTTCTGCTGAGAAAGC ATACCACGAAAATCATTCAGTTCAAGAAATCACAAATGCTTGTTTTGAGC CTCAAAATCAACTAGTCAAATGTGATCCAAGACACGGCAAATACATGTCT TGTTGTCTTCTCTACCGTGGAGATGTGGTCCCAAAAGATGTCAATGCTTC CATCTCTGCCTTGAAAACTAAACGCACTATTCAATTCGTCGATTGGTGTC CAACCGGATTCAAAATCGGAATCAATTACCAGCCACCAACTATTGTTCCT GGAGCAGACATGGCTAAAGTTTCCAGAGCTGTTTGCATGTTGTCTAACAC AACTGCCATTGCTGAAGCATGGGCTCGTCTTGATCATAAATTCGATTTAA TGTACGCAAAACGTGCTTTTGTGCACTGGTATGTCGGAGAAGGTAAGTTg cagtattttcaaaaataactgaTGAGGTTTATCAGTAGGCGAAGGAATCT TACTAAAACCTACCAACCTAATAGTGATTTCAGCAAACCCAAGGTCCTCT TTGTATATGGATAGCTAGCTGTCTACTCAAAATTACGACCGTAGCAGAAT GCTATACCTTTATACTAAGGTCACGTGGTCTTACttctgttgttgttgct gttgttggtCTCATTAGGATTTAGCTTGACTCATTTTCCATAAAcatacc gagtttatcgttctacatctgaaattttagttttgctaagctcatttgac gtcaatcgatacCTCGATTGTTAAGTGtgtgtgaaggtttcgatcacaga cttgcaccgcaatggactgtgttcgaattcCAAGCACTGCCAgacagggt gttagggaaatatggtgataccTTCACTCATACGTCAATTTCTATATTTC ATTTCTAGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTTAG CTGCTCTTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATTGC GAAGACGAAGAAGATGAAGATTATTGAGGCTAGAAATTTGTAGAAAAGAA CTAttagaaattaataaaatgGAAGAGCTTTCGACAATATTTGTTTATCA AGATTGACCAAATTTTAATTACAGAGTAATCTAATTGGATGAGTTGTTTT TATTCCAGGTATTTTGGAATCATTGATTAAATTATTGGTTGCGTTTAAAA TTATCTTTTAGTAAATTTTTCTCTCGTGTGCATTGTTAactatttttgaa tatttaaacatattaactttctttatttttgaaatctaatgACATTTTAG CAAGTTATActttttatctaaaaagctaTTTTTTCTTTGTCTAGTGTCTT CGTTAAAATCTTTCGCTCCGAAGAAATAAATTAGACAAGAAACTAATCTC AGCAAGTCCAAAATTCACTCAAAACAGGTGTAATAGAAGTTACGACAAGT GGAAAATTCTATTTCTCCTAGTTGAAAAACCTCCCGAGGGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045131XLOC_045131Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072709-exon-scaffold_82-1491911889:500867..500996TCONS_00072709-exon-scaffold_82-1491911889:500867..500996Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1510915933:500867..500996TCONS_00072709-exon-scaffold_82-1510915933:500867..500996Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1575043694:500867..500996TCONS_00072709-exon-scaffold_82-1575043694:500867..500996Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1491911889:503075..503288TCONS_00072709-exon-scaffold_82-1491911889:503075..503288Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1510915933:503075..503288TCONS_00072709-exon-scaffold_82-1510915933:503075..503288Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1575043694:503075..503288TCONS_00072709-exon-scaffold_82-1575043694:503075..503288Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1491911889:504051..505058TCONS_00072709-exon-scaffold_82-1491911889:504051..505058Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1510915933:504051..505058TCONS_00072709-exon-scaffold_82-1510915933:504051..505058Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1575043694:504051..505058TCONS_00072709-exon-scaffold_82-1575043694:504051..505058Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1491911889:505525..506111TCONS_00072709-exon-scaffold_82-1491911889:505525..506111Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1510915933:505525..506111TCONS_00072709-exon-scaffold_82-1510915933:505525..506111Clytia hemisphaericaexon
TCONS_00072709-exon-scaffold_82-1575043694:505525..506111TCONS_00072709-exon-scaffold_82-1575043694:505525..506111Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:500867..506111 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 1.33349e-09 1.33303 0 1.6487e-08 4.27375e-09 1.71822e-08 0.548301 0 0.0412036 0 2.36385 110.687 114.621 237.096 204.525 68.4982 69.3167 4.86367 1.6287 1.36088 0.0107582 0.106758 0.000401023 19.3771 13.6879 0.472059 11.38 76.1884 24.2623
Blast
BLAST of TCONS_00072709 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1)

HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0
Identity = 370/440 (84.09%), Postives = 412/440 (93.64%), Query Frame = 2
Query:  128 MRECISIHVGQAGCQIGNSCWELYCLEHGISPDGTATNEIT---GDESFSTFFSETGAGRHVPRAVFVDLEPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLDHIRKLADQCTXXXXXXXXXXXXXXXXXXXXXXXXERLSIDFGKKAKLEFAVYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVERPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYRGDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSA 1438
            MRECISIHVGQAG QIGN+CWELYCLEHGI PDG   ++ T   GD+SF+TFFSETGAG+HVPRAVFVDLEP+VIDE+R  TY+ LFHP+Q+I GKEDAANNYARGHYT+GKE ID  LD IRKLADQCTGLQGFL+FHSFGGGTGSGF+SLL+ERLS+D+GKK+KLEF++YPAPQVSTAVVEPYNS+LTTHTTLEHSDC FMVDNEAIYDICR+NLD+ERP+Y NLNR+ISQ+VSS+TASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAP++SAEKAYHE  +V EITNACFEP NQ+VKCDPRHGKYM+CCLLYRGDVVPKDVNA+I+ +KTKRTIQFVDWCPTGFK+GINYQPPT+VPG D+AKV RAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSA
Sbjct:    1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA 440          
The following BLAST results are available for this feature:
BLAST of TCONS_00072709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA1C0.000e+084.09Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C P... [more]
back to top