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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072709 ID=TCONS_00072709|Name=TCONS_00072709|organism=Clytia hemisphaerica|type=transcript|length=1939bp
GAATTTGTTTTTAACAACACAAGGAAGAAAGCTAGGCGTTGATTAAGACC
TTCATTAGACTTTGCTTCGAAAGATCTTTTCAAAATCGTCTACTTTTTGt
tcattcattttcttcttcaacaaAACTATGAGAGAGTGTATTTCAATCCA
CGTTGGACAAGCTGGTTGTCAAATCGGTAACTCATGCTGGGAATTGTATT
GTTTGGAACATGGAATCTCCCCCGATGGAACAGCTACCAATGAAATCACT
GGAGATGAATCGTTCAGTACTTTCTTTAGCGAAACGGGTGCTGGAAGACA
TGTTCCAAGAGCTGTTTTCGTTGATTTGGAACCATCGGTTATTGATGAAA
TTCGATGCAGTACCTACAAATCCCTCTTCCATCCTGACCAAATGATCGCT
GGTAAAGAAGACGCCGCTAACAATTACGCCAGAGGTCATTACACCGTCGG
TAAAGAGTACATCGACCGAACTTTGGATCATATCCGTAAATTGGCGGATC
AGTGCACTGGTCTTCAAGGATTCTTGTTGTTCCATTCCTTTGGTGGAGGT
ACCGGATCTGGTTTCTCGTCTCTCCTCTTGGAAAGATTATCCATTGATTT
TGGTAAAAAAGCCAAATTGGAATTTGCTGTTTATCCAGCACCACAAGTCT
CCACAGCTGTTGTTGAACCATACAACTCTGTCTTGACCACACATACCACT
TTGGAGCACTCCGATTGCACTTTCATGGTGGATAATGAAGCTATCTATGA
TATCTGTCGCAAGAATCTGGACGTCGAGCGTCCATCATATCACAATCTGA
ACCGAATGATCAGTCAAGTTGTTTCCTCAGTCACTGCATCTCTTAGATTT
GACGGCTCCTTGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCC
ATACCCTAGAATCCATTTCCCGATGGCCACTTATGCTCCTTTAGTTTCTG
CTGAGAAAGCATACCACGAAAATCATTCAGTTCAAGAAATCACAAATGCT
TGTTTTGAGCCTCAAAATCAACTAGTCAAATGTGATCCAAGACACGGCAA
ATACATGTCTTGTTGTCTTCTCTACCGTGGAGATGTGGTCCCAAAAGATG
TCAATGCTTCCATCTCTGCCTTGAAAACTAAACGCACTATTCAATTCGTC
GATTGGTGTCCAACCGGATTCAAAATCGGAATCAATTACCAGCCACCAAC
TATTGTTCCTGGAGCAGACATGGCTAAAGTTTCCAGAGCTGTTTGCATGT
TGTCTAACACAACTGCCATTGCTGAAGCATGGGCTCGTCTTGATCATAAA
TTCGATTTAATGTACGCAAAACGTGCTTTTGTGCACTGGTATGTCGGAGA
AGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTTAGCTGCTC
TTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATTGCGAAGAC
GAAGAAGATGAAGATTATTGAGGCTAGAAATTTGTAGAAAAGAACTAtta
gaaattaataaaatgGAAGAGCTTTCGACAATATTTGTTTATCAAGATTG
ACCAAATTTTAATTACAGAGTAATCTAATTGGATGAGTTGTTTTTATTCC
AGGTATTTTGGAATCATTGATTAAATTATTGGTTGCGTTTAAAATTATCT
TTTAGTAAATTTTTCTCTCGTGTGCATTGTTAactatttttgaatattta
aacatattaactttctttatttttgaaatctaatgACATTTTAGCAAGTT
ATActttttatctaaaaagctaTTTTTTCTTTGTCTAGTGTCTTCGTTAA
AATCTTTCGCTCCGAAGAAATAAATTAGACAAGAAACTAATCTCAGCAAG
TCCAAAATTCACTCAAAACAGGTGTAATAGAAGTTACGACAAGTGGAAAA
TTCTATTTCTCCTAGTTGAAAAACCTCCCGAGGGGAAAC Run BLAST on NCBI transcript from alignment at scaffold_82:500867..506111+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072709 ID=TCONS_00072709|Name=TCONS_00072709|organism=Clytia hemisphaerica|type=transcript|length=5245bp|location=Sequence derived from alignment at scaffold_82:500867..506111+ (Clytia hemisphaerica)
GAATTTGTTTTTAACAACACAAGGAAGAAAGCTAGGCGTTGATTAAGACC
TTCATTAGACTTTGCTTCGAAAGATCTTTTCAAAATCGTCTACTTTTTGt
tcattcattttcttcttcaacaaAACTATGGTAAGTAATCATCATCTACA
CttgaacacccccttctcacagacctggtaggtGTTCACAGCCGATGGGG
ataaaataacggactgaaaatcggtggggattgatattcccatggaATAT
GGGAATTGggtggggatttgaattccattgttttcaagtgaGAAAATTCA
ATGAAGATAGAAGAAATAGCACAACATTTTGCGGTGAGGATTTGTTGTTT
GATTATTTCCAACAGGGAAAAAACAAGAGTACGATTTTACACTGGaacaa
ttttttggccaatcttTTCAGTTGGAGGGATTACCACAagttctgtgaga
aggggtatACTTGACTCCCTCTTACCAAGTTCgatcttcaaaataaagaa
ctaagaaactttcaaaattataGAAACGTTAGATAatctggaaaggctta
tgatgacgtcatcacaaaactttcaacctccataacttttaataggaaga
ttttcaaggcatgttttatacctcaattttcatcagcatttcatgctctt
tccgctgaaactatcagattttgaatattttcaaaaaaataaaattttgc
ccagctacctgatgacgtcatctggcaggtggccaggtaggaaaatttgg
tgttactgtttaaaattaagtttcatACCCTCTAAGGACCATCTGTGCCA
aattatcaccatctgaagtatttttgtgctaacagacctcactaatttga
aattttttttagtaaTAGAAAAATTATTCGATTTACAGAGACTTTAAGGC
TGTCCAAAGTTTACCGTTTTTCAACTCTAAGGGGATGGCTTTTGAGGGCT
ATTTAAAAACTTAAGAATTAGGTGTGTTTTAGGTACATATcatttttcgt
tcttttttatCCTCGCTGAATTACAATACTTTTCGCCTAAAAAGAACGGA
GAATAACAATCTTGTCAAAGGAGTAAAAAGTCCTTTTTGCTTTTCATTAT
AAGATTCACTAAAAAAGATCCTAGATGACCCCTTCCTAggtaaatcttta
aaattacATGAAATGGATCTCGATGTAAGTCAGGTTAATAATAGGCAAGG
ATTAAGACCTCCTTTCCAACTGGGTTCTGTAATTTTATACAAAGAATAGC
AAACAAAGTAAAATTAGAATTAGAGTACCATGATTTTTTACACTCAGTTT
CTTAGCGAGGTCCTGCTGGTAACCATAGAGtgattaaaaaatcttttttt
catatGCGTCACTACCGATTAAATATagtcgaaattaaaaaaaatttatt
ttgctgTCCTTACTGCGATTTTTTTGCTCTTGCTTTGCAGAAGAAACAAC
GTTGAAAATAAGATCTTGGAGGTTGAAAAGATGGtaaacttatttcttta
aaattgtttGATCCAACTTCCAAAAGAAAACCCAGAAAGAACGGGTACGG
GGAATATATATAATCTCCAATATGGCAATTTACGAGATATACTGTAGACC
TTAAAATTCTGACGAAGTATTACTTTGACAAGACTTATCGTGAGGCATTG
AGAGATTTTAgaagtatatttaaaaaaaaaaaaaaagactttagcTAGAC
ATTACATTACGTGTCAATATGGCAAACGCAAATTAATTTGCGGATATTTT
AGTGAATAGCATTTCATAATTACAAAAACAATTTCGTTTCTCTCTCAATC
GGATGCAATTCAGTTGTAAAGAGTAATTTACGTCTGTACAACCCATTTCT
TTCAAAGACATTTGAATTGTGTAAGACGAAAAACAAAACCCAGAATAAAC
GCAATAGCTTGTAGAACCAATGCAAAAAGACCTAGAGGTCATCAAAAATG
GGGATCATTCCTTTCCCTCAGTATCTTAATCAACGTGGTTTTGCGACTGG
AGCTATTCATCCCTTATGCTAAAATCATTATAAAGTGATTGAAGCCCGAT
TGAAGGGGCTACAGAGGAATCTTCAATCTTTCTCAACTCAAGCTAGCAAA
AGTTCAGCattaagattttaaattttgtgtgAAAATGCTACATAAAGTTT
TAAAGTTAATGAATAGTTCAATTGGATTTAATCGTTTGATTCCGTTCCCA
ATTTTTAGAGAGAGTGTATTTCAATCCACGTTGGACAAGCTGGTTGTCAA
ATCGGTAACTCATGCTGGGAATTGTATTGTTTGGAACATGGAATCTCCCC
CGATGGAACAGCTACCAATGAAATCACTGGAGATGAATCGTTCAGTACTT
TCTTTAGCGAAACGGGTGCTGGAAGACATGTTCCAAGAGCTGTTTTCGTT
GATTTGGAACCATCGGTTATTGGTAAGATTCTTTGCAGCAAACATCAAAA
CCTCGTCTATCTAAATTAGCCTATCTCAAATGATTCACTCATCTGTTACA
TGCTTTTTTATTCGAATTCAATTGATTTGAGGAAATTCATGAACTTTCTT
CTATTGCTGTTGATTTTGTAAAACTCAATTCGTAAAAGAGTGTTCAAACA
TTAAAAGTTGAGTACTATGGTGACGTAGAAAAATatcatgtactgaaaac
acGAATCCTATAAAATGTCAAGGTGAACTTTGAGCTGACATAGTTTGGTG
TCTGAAATTGACTGGAATTGACTTTTAGAGATACATCCTTTCAATTCAAC
TAACACTTTATTCAAAGTTGTTTGATACTTTAGATGCGGATCAGAATGCA
ACATGCAAAATAGTTCTTCTGTTCAAACACAAGCAGAAAGACTTTTTATT
GAAGGACCTCAGATTTTCAGAAATCTAGAGGAAGAACATAGGTGGTTTTA
GACCCTGTAGAACTTATCAgatatttgtaattgtaattcattgttttttt
aacGAGCGTTACGCTCCTTCGCATGTTCCCGACGTACTCGCTCTTGAATA
TTGTATCATTGTTTGATTATATATTGTAGTTGAACACCATTTAAGAGTGC
TCGATAACTGTGTAGAGCCAttcataaatttatttcaagATTTCACTGTT
AAAAAAGTACATTACTTCGAGTTTCATGCTTACGGCAAATCATCAGACGT
ACAAATAAAAACACTTTCCTATATTTATTTACAGATGAAATTCGATGCAG
TACCTACAAATCCCTCTTCCATCCTGACCAAATGATCGCTGGTAAAGAAG
ACGCCGCTAACAATTACGCCAGAGGTCATTACACCGTCGGTAAAGAGTAC
ATCGACCGAACTTTGGATCATATCCGTAAATTGGCGGATCAGTGCACTGG
TCTTCAAGGATTCTTGTTGTTCCATTCCTTTGGTGGAGGTACCGGATCTG
GTTTCTCGTCTCTCCTCTTGGAAAGATTATCCATTGATTTTGGTAAAAAA
GCCAAATTGGAATTTGCTGTTTATCCAGCACCACAAGTCTCCACAGCTGT
TGTTGAACCATACAACTCTGTCTTGACCACACATACCACTTTGGAGCACT
CCGATTGCACTTTCATGGTGGATAATGAAGCTATCTATGATATCTGTCGC
AAGAATCTGGACGTCGAGCGTCCATCATATCACAATCTGAACCGAATGAT
CAGTCAAGTTGTTTCCTCAGTCACTGCATCTCTTAGATTTGACGGCTCCT
TGAATGTCGATTTGAATGAATTCCAAACCAACTTGGTTCCATACCCTAGA
ATCCATTTCCCGATGGCCACTTATGCTCCTTTAGTTTCTGCTGAGAAAGC
ATACCACGAAAATCATTCAGTTCAAGAAATCACAAATGCTTGTTTTGAGC
CTCAAAATCAACTAGTCAAATGTGATCCAAGACACGGCAAATACATGTCT
TGTTGTCTTCTCTACCGTGGAGATGTGGTCCCAAAAGATGTCAATGCTTC
CATCTCTGCCTTGAAAACTAAACGCACTATTCAATTCGTCGATTGGTGTC
CAACCGGATTCAAAATCGGAATCAATTACCAGCCACCAACTATTGTTCCT
GGAGCAGACATGGCTAAAGTTTCCAGAGCTGTTTGCATGTTGTCTAACAC
AACTGCCATTGCTGAAGCATGGGCTCGTCTTGATCATAAATTCGATTTAA
TGTACGCAAAACGTGCTTTTGTGCACTGGTATGTCGGAGAAGGTAAGTTg
cagtattttcaaaaataactgaTGAGGTTTATCAGTAGGCGAAGGAATCT
TACTAAAACCTACCAACCTAATAGTGATTTCAGCAAACCCAAGGTCCTCT
TTGTATATGGATAGCTAGCTGTCTACTCAAAATTACGACCGTAGCAGAAT
GCTATACCTTTATACTAAGGTCACGTGGTCTTACttctgttgttgttgct
gttgttggtCTCATTAGGATTTAGCTTGACTCATTTTCCATAAAcatacc
gagtttatcgttctacatctgaaattttagttttgctaagctcatttgac
gtcaatcgatacCTCGATTGTTAAGTGtgtgtgaaggtttcgatcacaga
cttgcaccgcaatggactgtgttcgaattcCAAGCACTGCCAgacagggt
gttagggaaatatggtgataccTTCACTCATACGTCAATTTCTATATTTC
ATTTCTAGGTATGGAAGAAGGTGAGTTCTCGGAGGCTCGTGAAGATTTAG
CTGCTCTTGAGAAAGATTACGAAGAGGTCGGAATGGATTCAGCAGATTGC
GAAGACGAAGAAGATGAAGATTATTGAGGCTAGAAATTTGTAGAAAAGAA
CTAttagaaattaataaaatgGAAGAGCTTTCGACAATATTTGTTTATCA
AGATTGACCAAATTTTAATTACAGAGTAATCTAATTGGATGAGTTGTTTT
TATTCCAGGTATTTTGGAATCATTGATTAAATTATTGGTTGCGTTTAAAA
TTATCTTTTAGTAAATTTTTCTCTCGTGTGCATTGTTAactatttttgaa
tatttaaacatattaactttctttatttttgaaatctaatgACATTTTAG
CAAGTTATActttttatctaaaaagctaTTTTTTCTTTGTCTAGTGTCTT
CGTTAAAATCTTTCGCTCCGAAGAAATAAATTAGACAAGAAACTAATCTC
AGCAAGTCCAAAATTCACTCAAAACAGGTGTAATAGAAGTTACGACAAGT
GGAAAATTCTATTTCTCCTAGTTGAAAAACCTCCCGAGGGGAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072709-exon-scaffold_82-1491911889:500867..500996 | TCONS_00072709-exon-scaffold_82-1491911889:500867..500996 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1510915933:500867..500996 | TCONS_00072709-exon-scaffold_82-1510915933:500867..500996 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1575043694:500867..500996 | TCONS_00072709-exon-scaffold_82-1575043694:500867..500996 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1491911889:503075..503288 | TCONS_00072709-exon-scaffold_82-1491911889:503075..503288 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1510915933:503075..503288 | TCONS_00072709-exon-scaffold_82-1510915933:503075..503288 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1575043694:503075..503288 | TCONS_00072709-exon-scaffold_82-1575043694:503075..503288 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1491911889:504051..505058 | TCONS_00072709-exon-scaffold_82-1491911889:504051..505058 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1510915933:504051..505058 | TCONS_00072709-exon-scaffold_82-1510915933:504051..505058 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1575043694:504051..505058 | TCONS_00072709-exon-scaffold_82-1575043694:504051..505058 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1491911889:505525..506111 | TCONS_00072709-exon-scaffold_82-1491911889:505525..506111 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1510915933:505525..506111 | TCONS_00072709-exon-scaffold_82-1510915933:505525..506111 | Clytia hemisphaerica | exon |
| TCONS_00072709-exon-scaffold_82-1575043694:505525..506111 | TCONS_00072709-exon-scaffold_82-1575043694:505525..506111 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:500867..506111 + |
Blast
BLAST of TCONS_00072709 vs. Swiss-Prot (Human)
Match: TBA1C (Tubulin alpha-1C chain OS=Homo sapiens GN=TUBA1C PE=1 SV=1) HSP 1 Score: 759.985 bits (1961), Expect = 0.000e+0 Identity = 370/440 (84.09%), Postives = 412/440 (93.64%), Query Frame = 2
Query: 128 MRECISIHVGQAGCQIGNSCWELYCLEHGISPDGTATNEIT---GDESFSTFFSETGAGRHVPRAVFVDLEPSVIDEIRCSTYKSLFHPDQMIAGKEDAANNYARGHYTVGKEYIDRTLDHIRKLADQCTXXXXXXXXXXXXXXXXXXXXXXXXERLSIDFGKKAKLEFAVYPAPQVSTAVVEPYNSVLTTHTTLEHSDCTFMVDNEAIYDICRKNLDVERPSYHNLNRMISQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPMATYAPLVSAEKAYHENHSVQEITNACFEPQNQLVKCDPRHGKYMSCCLLYRGDVVPKDVNASISALKTKRTIQFVDWCPTGFKIGINYQPPTIVPGADMAKVSRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDSA 1438
MRECISIHVGQAG QIGN+CWELYCLEHGI PDG ++ T GD+SF+TFFSETGAG+HVPRAVFVDLEP+VIDE+R TY+ LFHP+Q+I GKEDAANNYARGHYT+GKE ID LD IRKLADQCTGLQGFL+FHSFGGGTGSGF+SLL+ERLS+D+GKK+KLEF++YPAPQVSTAVVEPYNS+LTTHTTLEHSDC FMVDNEAIYDICR+NLD+ERP+Y NLNR+ISQ+VSS+TASLRFDG+LNVDL EFQTNLVPYPRIHFP+ATYAP++SAEKAYHE +V EITNACFEP NQ+VKCDPRHGKYM+CCLLYRGDVVPKDVNA+I+ +KTKRTIQFVDWCPTGFK+GINYQPPT+VPG D+AKV RAVCMLSNTTA+AEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG DSA
Sbjct: 1 MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTIGGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGADSA 440
The following BLAST results are available for this feature:
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