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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072701 ID=TCONS_00072701|Name=TCONS_00072701|organism=Clytia hemisphaerica|type=transcript|length=1833bp cagaaaaagaaaataaaaaatgggaaACGAAAAGAAACAGAAGTTTACAG AAGGTGAAAAAGTGCTTTGTTATCATGGACCCCTTTTGTACGAggcaaaa attcataaattaaaaacaaaagatcGTGTCACCAAGTTTTTGGTTCATTA TGCTGGATGGAACACCAAATGGGATGAATGGGTAGCGGATAGTCGTGTCA TGAAATATAACGATGAAGGACTGAAGaagcaaaaagaattgaaacaaCAT CATTCATCGTCACGTaaaggaaagaagaaagattcaAAAGACGACAAACC AGATACTCCAGTGCCTTCTAAACGAAGAAAAGGACGTCATGCAAACCAAA ATGATTCTGAACCTTCCTATGTACAAAAAATGGAAGTCAAAATCATCATA CCTCAGGATTTAAGGCGTTTCCTGTTAGATGATTGTGATTTTGTGACACG TCAAAAGCAGTTGGTGCCATTGCCTAAACCCGAAGAATTAACATTGAAAG CAGTCACTGATCGATTTTTTAAGACGAAGGAAGAGGGTGGAGAAGATGGT AAACTATCGGGAAGTTTTAGCGAAGTGTGCCGTGGTATTTGCGAATATTT TGATGTTATGCTCGGCTCGCAATTATTGTACAAATTTGAACGAACTCAGT ATGGAGATATTTTGAAAGAACATCCTGGTAAACCGTTGTGTGAAATATAT GGTTGTGAACATCTATTAAGGTTGTTTGTTAAGATGGGCACCTTTCTGTC TTATAGTTGTCTGGATGAGCCCAGTATGGAATTTGTTGTCAGTCACATCC ATGATTTCTTGGAGTTTATGACGAAGCAAGCCGATGATCTCTTTTGTGCC GAATATGAGAATTCTACTCCAGATTATCAACGACGTACAAACGTATAATC TTCAATGGAGAGATTTTTTCTCTGACCCCTTGTTATTAATTAAAGACCAA AATCGTTTTGAAAATAGACAGCTTTCattcacaaaatttattttggagAT CAAAATTCTATTTCTAAGTGTAAAGCAAAACATTGAAAGGCTTTAAGACT TAATCTTGACGATTATCTTTGGACTGTGTTTGAATGCGCATGGCTGGATC GTCTACATATTGTGGTCGTGACCTTTAGCTTTCAGAAATTATGTTTAGCT TCTGCTTCACAGTGTCTGGAACAGAATCTTTATAATACCCTGGATATTTG TGACAAATCCTACATCAGAAATACATCGAGTTTATCTACATAGCAGTTGT AGGATGGAATCAGGCTTGTAAATTGAGcctttaaaaataatttctacCTT CTACTGTACATTTATTTCAAACTCAGTAAtaaagtaaattattttgacgA TTCTTAATTTTAATAAGTTATGTTAcacttttttccggacacccgtATGA AATAACTTCAAGTATGATTATTCATACCAGAAAGAGGATCTCGTCGTATG ATAATTGGCATCTTTATTCAGTGAATTATTTCAATTGGGAAACCGTGAGC TACATATTTTCACCTTATTACTACTACTTTAGCACCTTAAAATGCTACAA AGCCTATCaaaggattttcttttgttagtGAAAGGCTTAACTCGGAACGT GCCAAACTTGTCAACACAAACACAACATATAATTCCTTCtttcgtcaaaa aaaaacaaaaacttttttaatggaAATCCTTCGTGCATGTCAACCATCAA TCGCTTAGTTACTTTCGATTAACATGTAAATAGGGTCTTAACTTAGCAAC AAGGTGTTTACAATATAACACGTCTTCTTCAATCGACTTAGAACCTTTTT CACCCTCGTCAGTTTTTTTCTTACCATTCTAAA Run BLAST on NCBI protein sequence of TCONS_00072701-protein >TCONS_00072701-protein ID=TCONS_00072701-protein|Name=TCONS_00072701-protein|organism=Clytia hemisphaerica|type=polypeptide|length=292bp
MGNEKKQKFTEGEKVLCYHGPLLYEAKIHKLKTKDRVTKFLVHYAGWNTK WDEWVADSRVMKYNDEGLKKQKELKQHHSSSRKGKKKDSKDDKPDTPVPS KRRKGRHANQNDSEPSYVQKMEVKIIIPQDLRRFLLDDCDFVTRQKQLVP LPKPEELTLKAVTDRFFKTKEEGGEDGKLSGSFSEVCRGICEYFDVMLGS QLLYKFERTQYGDILKEHPGKPLCEIYGCEHLLRLFVKMGTFLSYSCLDE PSMEFVVSHIHDFLEFMTKQADDLFCAEYENSTPDYQRRTNV Run BLAST on NCBI transcript from alignment at scaffold_82:409373..414648+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072701 ID=TCONS_00072701|Name=TCONS_00072701|organism=Clytia hemisphaerica|type=transcript|length=5276bp|location=Sequence derived from alignment at scaffold_82:409373..414648+ (Clytia hemisphaerica) cagaaaaagaaaataaaaaatgggaaACGAAAAGAAACAGAAGTTTACAG
AAGGTGAAAAAGTGCTTTGTTATCATGGACCCCTTTTGTACGAggcaaaa
attcataaattaaaaacaaaagatcGTGTCACCAAGTTTTTGGTTCATTA
TGCTGGATGGAACACCAAATGGGATGAATGGGTAGCGGATAGTCGTGTCA
TGAAATATAACGATGAAGGACTGAAGaagcaaaaagaattgaaacaaCAT
CATTCGTATGTATTATCCCTTCCTATGCAATCACAATGTAACTGTTATTT
TTCTTTGTGCCCACCAATCCACTTTCAAGTTCATCAAGGGTTCACATTTA
CAATCTACTTGTGCTCTGCACAGTCAATTCGTCGACTTTTTGTCTTATCT
CTTGCATTCGTTGCGCTTGGAAATATGATTTGGTATTTTTCTCTGGATAT
AAGATCATTTGAATAGCTTTCTGTCCATACATCATAAAAAAGATAACAAA
AGTGTTTATGGCCACGGttaaattctgataaatctCTTTGTCAGTAAAAC
TTTGAAATGGAATGATGATAAACATGACGACAGACATTACGGTTGTCGCG
AACGAAGCATACACCAAGGACATACCGTCGTTCATAACACTTGGTAAATG
TCGTCCACGAAACGCTTGAACAAAACAAGCAATCTGTATGAACATAACAA
ATCCAATGATTATATTACCATGAAAACTGGTACTACATTGGTAGATTCTT
TGCATGGTCGAAATTTCCAGATTAAAAGAGAATGGTTGCTGTATCTGGGA
AGTGATCACCACCAATGAATTGCCAAAGATGAGCAAAGTGATGATTGTGA
TGATTTGCAATGTGACTGTCTCTTTTGTGTCTTTCTCTGTGATAGGGATT
TTACTAAGAAAAGCTTGAAcaattttttgtgatttgatAAACATGAGGCT
AACATTCAAAATATAGCCAACACTGATAGAAGCTAATCTTACCATACACA
CTATTTGAGATGGTCTTGCAAAATGAAGAGTAACCATAAAAGTGATGGTT
ATGAACTGAACTGATAAATGTACAAATGTCACTTTGATGTCACTGCTGAT
GACAACTGGAGTTCTTTTTCTTCTCCAAAATAACACAGTGGTTAAGGAAA
TTGCCAAAATGTTAACGATAGCTGCAGCAAGAAGAATCTGGAACAACTTT
TCCCTAATAAAATTTGGGTGTGAATCAAAGTAGGGGTCAATGCATTCTGT
CCGGTTTCCATTGTCAATACTAAACTTTCCTCGGCATGGTATACATTCGT
CATCATTATCACCAACAGTTAACTTGTATTGATTGACGGGACATAAAACA
CATCGATATCCATAACCTCCGTCTATTTCACCATATATTTTATATTTGCC
TTGTCCACAAGCCAATTGTGGACATTCATTATGGATCGGTCTAAACGATA
TATCTGAAAAAAGAGCCAAATTTGTTGGATTGAATCTGTACCAATAATAa
gtattgatttttttgaataaagaaaCGTGCTCGTTACGATTTCTGTTTTT
GGCCCGAAGACGGTCCACATTGTATAGGCGAAGTCGTCCAGGGAGTGGGT
CTGGTTTCGCTAAAATAATAAGAATGTTTACATCGATGATTATATCGTTT
GAAATGTCTGTAAAAGGATACAACATGTATGTTTTTAACTGATAGATTTT
TGAGATGGTTTTTTGGGTAACACCATACTGCAGCAATGAGCTGTTTTTTG
GTAACcatttttctcttcttctttgGTCAAAGAGAGTCAAGTAAGTCCTT
GGATAGAATTGCCAGTCGCGGTACTGGTGCCCCATTGTTTCATGTACTAG
AATGGGGACTTTTGCTTCATCATATAGATCTTTCAGATGTCTGAGAGTCT
CCATAGAAACGGCATGGTCTCCAAATAATACGATTGCTGGTCTTCGGTGA
TCTTTAAGCcactttttgctgaaaaaaattCTGTTAGTTCTAATTTCATT
CATGGAGATCGTATGCAACTGCATACATCGGTGCTGTTCTTTGAATCTCT
CGATACTCAAGTTATAATAAGTGTCATAAGGCGAGAATATCGGGTTTGCG
GTCTCCTTGTCCTTCAACAATACCAAGAAAAGGTCTTGCCATTGGAACTT
TTCCACTATCTTTGACAGGACACAAGAATTCGAACTCTACTGGGATATGG
AGGCCGTTTCGAAGATTTGGCGATTCTAAGAATCGTACTGGTATATTGGT
GAAAGAGAGTGTTTCAACTATATACAAACTCATTTCTGTTGGTAGATGGG
TGATGACGGAAACAATTTTAGATTCTTGGTACGATGTCGATGGGTTCTGG
ATAACCCATGTATTATTAAGGAGAACTTCTATCAACAAAAGTTTCAAGCG
CTCTGGATCATTGCAtacatcaaaagtttcaaatcgTATATTATAGTGTT
TGTTATAGTGTTTGTTATCATTGATGAACTGTTGTGTTTTTAGTTGTATT
TCGCGTTGCATCTCTGTCACCACTTCTTTGAATGTTCCAGCATCTTTATT
TCGTTCAGTTTGATTGAAAGAGGGCTCGTTAGAACAGATAGAAAATATAC
CAACAATGTAAAATGTATCTGATGAAGTATTTGACAGGTGAAAAGTCGTT
GCTGtcaacaagaaaaataaaaggaCAATTCCCTTCGCCATAATATCACA
CAATCGCAGAACTATCTCAAGATTCTAGATTATCGTTTTAAATAATGTAT
CGTTTTGTTAAATTTCTGCAGGAGATCCTTCTTATGTTATTCTaatcaaa
atttccacctgCACGGAAAACTTCTCTAATTAGCGATTTTGAATGggaaa
atttgatttcatttttgatcaaaactTATTTGTTTTATAATTCGATAATG
ATAATGGGAAGCTTTTCTATCATCTCCCTATCAAGAtggaaattaaaaaa
caacTGTCACCCCTGTTAGCCTAGTCGGGTAGCCAAATATTACTTCTCAA
TAGGCTTGATGGTATGATAAAGTTGCCGGGTGTTATATGACAGgcttcat
tttttgattttgtcacTTTGACCTTTTTTGCTTTACAAGTattatgggtt
tttattttattatctcATTGTATTGCACCATTTCCGGGggcaaatgaccc
cattttggagatctactcttcaagctctatcagatggtacaatcagtttt
tataaaaaaaggaatttcaagAATTGATTTTCCAAGGGTCTGTAGGCCAA
AATAACCTCTCCTTTCAAGGCTACatagaaaaattttaaagggcCGGCGA
TTTGCATAAATACTTCGCTGCTGTGCAACCTTTCGCAAGAtatagtgttt
ttttattcagACATAAGATAACTCATACCATACGTGAAAGACTTGCGCTG
CTTCGCCGATGCGTCAAAGTTGCGAAGCAGTATTATCCAtgctaaaatat
cattttatatGATTAGTTTTACATCAGAAATTGCCAGCAGCGCCAGCTTG
GCAAAAGCTGGTTTGGAAGTCCCGagggaccatataatgagaaataaaaa
taaaaatccataTATACTACTTGTCAGGGTCAACCAAGACCGCCACCGGG
CTATTTCAACAGTCTCTTTTCTCGAgcttttggtaaaatttggcaATAAT
CTGCACGCTATTGCTAGTTTAGCATTAATTCTTGTTCTATTTGTTTAGAT
CGTCACGTaaaggaaagaagaaagattcaAAAGACGACAAACCAGATACT
CCAGTGCCTTCTAAACGAAGAAAAGGACGTCATGCAAACCAAAATGATTC
TGAACCTTCCTATGTACAAAAAATGGAAGTCAAAATCATCATACCTCAGG
ATTTAAGGCGTTTCCTGTTAGATGATTGTGATTTTGTGACACGTCAAAAG
CAGTTGGTGCCATTGCCTAAACCCGAAGAATTAACATTGAAAGCAGTCAC
TGATCGATTTTTTAAGACGAAGGAAGAGGGTGGAGAAGATGGTAAACTAT
CGGGAAGTTTTAGCGAAGTGTGCCGTGGTATTTGCGAATATTTTGATGTT
ATGCTCGGCTCGCAATTATTGTACAAATTTGAACGAACTCAGTATGGAGA
TATTTTGAAAGAACATCCTGGTAAACCGTTGTGTGAAATATATGGTTGTG
AACATCTATTAAGGTTGTTTGTTAAGATGGGCACCTTTCTGTCTTATAGT
TGTCTGGATGAGCCCAGTATGGAATTTGTTGTCAGTCACATCCATGATTT
CTTGGAGTTTATGACGAAGCAAGCCGATGATCTCTTTTGTGCCGAATATG
AGAATTCTACTCCAGATTATCAACGACGTACAAACGTATAATCTTCAATG
GAGAGATTTTTTCTCTGACCCCTTGTTATTAATTAAAGACCAAAATCGTT
TTGAAAATAGACAGCTTTCattcacaaaatttattttggagATCAAAATT
CTATTTCTAAGTGTAAAGCAAAACATTGAAAGGCTTTAAGACTTAATCTT
GACGATTATCTTTGGACTGTGTTTGAATGCGCATGGCTGGATCGTCTACA
TATTGTGGTCGTGACCTTTAGCTTTCAGAAATTATGTTTAGCTTCTGCTT
CACAGTGTCTGGAACAGAATCTTTATAATACCCTGGATATTTGTGACAAA
TCCTACATCAGAAATACATCGAGTTTATCTACATAGCAGTTGTAGGATGG
AATCAGGCTTGTAAATTGAGcctttaaaaataatttctacCTTCTACTGT
ACATTTATTTCAAACTCAGTAAtaaagtaaattattttgacgATTCTTAA
TTTTAATAAGTTATGTTAcacttttttccggacacccgtATGAAATAACT
TCAAGTATGATTATTCATACCAGAAAGAGGATCTCGTCGTATGATAATTG
GCATCTTTATTCAGTGAATTATTTCAATTGGGAAACCGTGAGCTACATAT
TTTCACCTTATTACTACTACTTTAGCACCTTAAAATGCTACAAAGCCTAT
CaaaggattttcttttgttagtGAAAGGCTTAACTCGGAACGTGCCAAAC
TTGTCAACACAAACACAACATATAATTCCTTCtttcgtcaaaaaaaaaca
aaaacttttttaatggaAATCCTTCGTGCATGTCAACCATCAATCGCTTA
GTTACTTTCGATTAACATGTAAATAGGGTCTTAACTTAGCAACAAGGTGT
TTACAATATAACACGTCTTCTTCAATCGACTTAGAACCTTTTTCACCCTC
GTCAGTTTTTTTCTTACCATTCTAAA Coding sequence (CDS) from alignment at scaffold_82:409373..414648+ >TCONS_00072701 ID=TCONS_00072701|Name=TCONS_00072701|organism=Clytia hemisphaerica|type=CDS|length=1758bp|location=Sequence derived from alignment at scaffold_82:409373..414648+ (Clytia hemisphaerica) atgggaaACGAAAAGAAACAGAAGTTTACAGAAGGTGAAAAAGTGCTTTG TTATCATGGACCCCTTTTGTACGAggcaaaaattcataaattaaaaacaa aagatcGTGTCACCAAGTTTTTGGTTCATTATGCTGGATGGAACACCAAA TGGGATGAATGGGTAGCGGATAGTCGTGTCATGAAATATAACGATGAAGG ACTGAAGaagcaaaaagaattgaaacaaCATCATTCATCGTCACGTaaag gaaagaagaaagattcaAAAGACGACAAACCAGATACTCCAGTGCCTTCT AAACGAAGAAAAGGACGTCATGCAAACCAAAATGATTCTGAACCTTCCTA TGTACAAAAAATGGAAGTCAAAATCATCATACCTCAGGATTTAAGGCGTT TCCTGTTAGATGATTGTGATTTTGTGACACGTCAAAAGCAGTTGGTGCCA TTGCCTAAACCCGAAGAATTAACATTGAAAGCAGTCACTGATCGATTTTT TAAGACGAAGGAAGAGGGTGGAGAAGATGGTAAACTATCGGGAAGTTTTA GCGAAGTGTGCCGTGGTATTTGCGAATATTTTGATGTTATGCTCGGCTCG CAATTATTGTACAAATTTGAACGAACTCAGTATGGAGATATTTTGAAAGA ACATCCTGGTAAACCGTTGTGTGAAATATATGGTTGTGAACATCTATTAA GGTTGTTTGTTAAGATGGGCACCTTTCTGTCTTATAGTTGTCTGGATGAG CCCAGTATGGAATTTGTTGTCAGTCACATCCATGATTTCTTGGAGTTTAT GACGAAGCAAGCCGATGATCTCTTTTGTGCCGAATATGAGAATTCTACTC CAGATTATCAACGACGTACAAACGTATAAatgggaaACGAAAAGAAACAG AAGTTTACAGAAGGTGAAAAAGTGCTTTGTTATCATGGACCCCTTTTGTA CGAggcaaaaattcataaattaaaaacaaaagatcGTGTCACCAAGTTTT TGGTTCATTATGCTGGATGGAACACCAAATGGGATGAATGGGTAGCGGAT AGTCGTGTCATGAAATATAACGATGAAGGACTGAAGaagcaaaaagaatt gaaacaaCATCATTCATCGTCACGTaaaggaaagaagaaagattcaAAAG ACGACAAACCAGATACTCCAGTGCCTTCTAAACGAAGAAAAGGACGTCAT GCAAACCAAAATGATTCTGAACCTTCCTATGTACAAAAAATGGAAGTCAA AATCATCATACCTCAGGATTTAAGGCGTTTCCTGTTAGATGATTGTGATT TTGTGACACGTCAAAAGCAGTTGGTGCCATTGCCTAAACCCGAAGAATTA ACATTGAAAGCAGTCACTGATCGATTTTTTAAGACGAAGGAAGAGGGTGG AGAAGATGGTAAACTATCGGGAAGTTTTAGCGAAGTGTGCCGTGGTATTT GCGAATATTTTGATGTTATGCTCGGCTCGCAATTATTGTACAAATTTGAA CGAACTCAGTATGGAGATATTTTGAAAGAACATCCTGGTAAACCGTTGTG TGAAATATATGGTTGTGAACATCTATTAAGGTTGTTTGTTAAGATGGGCA CCTTTCTGTCTTATAGTTGTCTGGATGAGCCCAGTATGGAATTTGTTGTC AGTCACATCCATGATTTCTTGGAGTTTATGACGAAGCAAGCCGATGATCT CTTTTGTGCCGAATATGAGAATTCTACTCCAGATTATCAACGACGTACAA ACGTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00072701-exon-scaffold_82-1491911889:409373..409627 | TCONS_00072701-exon-scaffold_82-1491911889:409373..409627 | Clytia hemisphaerica | exon |
TCONS_00072701-exon-scaffold_82-1510915933:409373..409627 | TCONS_00072701-exon-scaffold_82-1510915933:409373..409627 | Clytia hemisphaerica | exon |
TCONS_00072701-exon-scaffold_82-1575043694:409373..409627 | TCONS_00072701-exon-scaffold_82-1575043694:409373..409627 | Clytia hemisphaerica | exon |
TCONS_00072701-exon-scaffold_82-1491911889:413071..414648 | TCONS_00072701-exon-scaffold_82-1491911889:413071..414648 | Clytia hemisphaerica | exon |
TCONS_00072701-exon-scaffold_82-1510915933:413071..414648 | TCONS_00072701-exon-scaffold_82-1510915933:413071..414648 | Clytia hemisphaerica | exon |
TCONS_00072701-exon-scaffold_82-1575043694:413071..414648 | TCONS_00072701-exon-scaffold_82-1575043694:413071..414648 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_82 | supercontig | scaffold_82:409373..414648 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005634 | nucleus |
Vocabulary: Biological Process
Term | Definition |
GO:0006355 | regulation of transcription, DNA-templated |
GO:0006325 | chromatin organization |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006325 |
chromatin organization |
biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
cellular_component |
GO:0005634 |
nucleus |
Blast
BLAST of TCONS_00072701 vs. Swiss-Prot (Human)
Match: MO4L1 (Mortality factor 4-like protein 1 OS=Homo sapiens GN=MORF4L1 PE=1 SV=2) HSP 1 Score: 204.527 bits (519), Expect = 3.751e-59 Identity = 125/358 (34.92%), Postives = 193/358 (53.91%), Query Frame = 2
Query: 29 EKKQKFTEGEKVLCYHGPLLYEAKIHKLKTKDRVTKFLVHYAGWNTK---------------------------------------WDEWVADSRVMKYNDEGLKKQKELKQHHXXXXXXXXXXXXX-------------------------------XXXXXXXXXXRRKGRHANQNDSEPSYVQKMEVKIIIPQXXXXXXXXXXXXVTRQKQLVPLPKPEELTLKAVTDRFFKTKEEGGEDGKLSGSFSEVCRGICEYFDVMLGSQLLYKFERTQYGDILKEHPGKPLCEIYGCEHLLRLFVKMGTFLSYSCLDEPSMEFVVSHIHDFLEFMTKQADDLFCA-EYENSTPDYQRRT 889
+ K KF EGE+VLC+HGPLLYEAK K+ KD+ K+ +HY+GWN K WDEWV +SRV+KY D L+KQ+EL++ + K +TP P ++++ R ++E +++ ++EVK+ IP++L+ +L+DD D +TRQKQL LP + + ++ + + K+ G + +EV GI EYF+VMLG+QLLYKFER QY +IL +HP P+ ++YG HLLRLFV++G L+Y+ LDE S+ +++++HDFL+++ K + LF A +YE + P+Y R+
Sbjct: 6 DPKPKFQEGERVLCFHGPLLYEAKCVKVAIKDKQVKYFIHYSGWNKKSAVRPRRSEKSLKTHEDIVALFPVPEGAPSVHHPLLTSSWDEWVPESRVLKYVDTNLQKQRELQKANQEQYAEGKMRGAAPGKKTSGLQQKNVEVKTKKNKQKTPGNGDGGSTSETPQPPRKKRARVDPTVENEETFMNRVEVKVKIPEELKPWLVDDWDLITRQKQLFYLP--AKKNVDSILEDYANYKKSRGNTDNKEYAVNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAMLAYTPLDEKSLALLLNYLHDFLKYLAKNSATLFSASDYEVAPPEYHRKA 361
The following BLAST results are available for this feature:
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