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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072685 ID=TCONS_00072685|Name=TCONS_00072685|organism=Clytia hemisphaerica|type=transcript|length=1724bp
AAAGCACGCGTACACATTTCTTTATTTCCTTATAAGCAACTCGATTTTTC
ACTGAAAGTGAATGTAGCCATCATATGTGCGTTTAGGTTTTTCACATCCT
TCTTGGCATTAGTAACAAAATTTCGATAGACAGCCAGGGAATGAAACTTT
TGATCTTAAAATTCAAATACtcagaaaattaaatatttaaaatcttagGT
TCCCATTAAAAAGTGCTTcttttttccttcatttttcatcCATATAGAAG
TGGCACTGCCAACTTGTTTGGGGTGATTTCTTTTAGTTTGGGATAACTCC
ACAACAGGATAGAGGCCGCGATCGTGACGCAGGCCGAACTCaagttttct
ggaaatttgtttTTCAGAAATTCGATGACCTCAGTCAATGGCGTAACATC
GTATTTCAGGTTTTCTGTCAAATAGAAATTAAGGAAGAATTAGATAGTTT
GTCGAGATCTCTGAATTGGAGAACCATTTACAGTTTTGGTTCAAATGATA
GttttaaatattataaataTGATAACTAATTAATAAACATAACTTGGCTT
TTTAATTGAACACCAACTATCGCCAGTTCCAACTCAGCAACGAGCAACGG
TACTCTTTTGAGTGCTGGGTAGCCCATTTAGAAGTGACACTGTCAACTTG
TTTGGGTGATTTCTTTTAGTTTAGGATAACTCGACAGCAGGATGGAGGCC
GCGATCGTGACGCAGGCCGAACTcaaattttctggaaatttggtTTTTAG
AAAGAGGATGACCTCAGTCAATGGCGTAACATCGTATTTCaggttttctt
tcaaaatagaaattaaGGAAGAATTAGATAGTTTGTCGAGATCTCTGAAT
TGGAGAACCATTTACAGTTTTGGTTCAAATGATAGttttaaatattataa
ataTGATAActaattaataattaataaacatAACTTGGCTTTTTAATTGA
ACACCAACCATCGCCAGTTCCAACTCAGCAACGAGCAACGGTACTCTTTT
GAGTGCTGGGTAGCCCATTTAGACGTGGCACTGCCAACTTGTTTGGGGCG
ATTTCTTTTAGTTTGGGATAACTCGACAGCAGGATGGAGGCCGCGATCGT
AATGCAGGCCGAACTTAAATTTTCTGGGAATTTGTTTTTTAGAAAGAGGA
TGACCTCAGTCAATGGCGTAACATCGTATTTCaggttttctgtcaaaata
gAAATTAAGGAAGAATAAGATAGTTTGTCGAGATCTCTGAATTGGAGAAC
CATTTACAGTTTTGGTTCATATGACAGTTTTAGATATTGTGACGAAGGGA
AGTTAGGCGATTGGGGTCACCCTTTAGTTATTGAGGGGACCTCTCAGATC
ACTTATCTGTTCCTTCGATCAGGGTATCCCTTATTGGGGATAAGTCTATG
GGCACGTAGTAAAGGTACGCTAATAGATTTCAATCAACATCAATTCTGTT
TCTCCAATTAAgcaataaatatcaaataagCATCAAATAAATTAGTAACT
CTGGCATATAATTAACGATAGTCTCTGTTCAAGTCCTTCTCCTTCAAGTT
CTCCCTTTCAAGTCCctgatttctttccttttctcaCTCATAATCTCTCG
CCCTATTCAGAGGTCTGAGCTCGAGGGCCTGAGCCCCACTCTATTGATGT
CTATTCATTTTTCAGTTCATTAACATCGTGTTGGCTCAGTCCCAACCTCC
TTTGCATTATTCATTTTCGTTTAc Run BLAST on NCBI transcript from alignment at scaffold_82:234747..236862+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072685 ID=TCONS_00072685|Name=TCONS_00072685|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_82:234747..236862+ (Clytia hemisphaerica)
AAAGCACGCGTACACATTTCTTTATTTCCTTATAAGCAACTCGATTTTTC
ACTGAAAGTGAATGTAGCCATCATATGTGCGTTTAGGTTTTTCACATCCT
TCTTGGCATTAGTAACAAAATTTCGATAGACAGCCAGGGAATGAAACTTT
TGATCTTAAAATTCAAATACtcagaaaattaaatatttaaaatcttagGT
TCCCATTAAAAAGTGCTTcttttttccttcatttttcatcCATATAGAAG
TGGCACTGCCAACTTGTTTGGGGTGATTTCTTTTAGTTTGGGATAACTCC
ACAACAGGATAGAGGCCGCGATCGTGACGCAGGCCGAACTCaagttttct
ggaaatttgtttTTCAGAAATTCGATGACCTCAGTCAATGGCGTAACATC
GTATTTCAGGTTTTCTGTCAAAGTAGAAATTAAGGAAGAATAAGATAATT
TGTCGAGATCTCTGAATTGGAGAACCATTTACCGTTTTGGTTCAAATGAT
AGTTTTAAATATGATAAATATGATAActaattaataattaataaacatAA
CTTGGCTTTTTAATTGAACACCAACTATCGCCAGTTCCAACTCAACAACG
AGCAACGGTACTCTTTTGAGTGCTGGGTAGCCCATTTAGAAGTGGCACTG
CCAACTTGTTTGGGTGATTTCTTTTAGTTTAGGATAACTCGACAGCAGGA
TGGAGGCCGCGATCGTGATGCAGGCCGAACTcaaattttctggaaatttg
gtTTTTAGAAAGAGGATGACCTCAGTCAATGGCGTAACATCGTATTTTAG
GTTTTCTGTCAAAGTAGAAATTAAGGAAGAATTAGATAGTTTGTCGAGAT
CTCTGAATTGGAGAACCATTTACAGTTTTGGTTCAAATGATAGttttaaa
tattataaataTGATAACTAATTAATAAACATAACTTGGCTTTTTAATTG
AACACCAACTATCGCCAGTTCCAACTCAGCAACGAGCAACGGTACTCTTT
TGAGTGCTGGGTAGCCCATTTAGAAGTGACACTGTCAACTTGTTTGGGTG
ATTTCTTTTAGTTTAGGATAACTCGACAGCAGGATGGAGGCCGCGATCGT
GACGCAGGCCGAACTcaaattttctggaaatttggtTTTTAGAAAGAGGA
TGACCTCAGTCAATGGCGTAACATCGTATTTCaggttttctttcaaaata
gaaattaaGGAAGAATTAGATAGTTTGTCGAGATCTCTGAATTGGAGAAC
CATTTACAGTTTTGGTTCAAATGATAGttttaaatattataaataTGATA
ActaattaataattaataaacatAACTTGGCTTTTTAATTGAACACCAAC
CATCGCCAGTTCCAACTCAGCAACGAGCAACGGTACTCTTTTGAGTGCTG
GGTAGCCCATTTAGACGTGGCACTGCCAACTTGTTTGGGGCGATTTCTTT
TAGTTTGGGATAACTCGACAGCAGGATGGAGGCCGCGATCGTAATGCAGG
CCGAACTTAAATTTTCTGGGAATTTGTTTTTTAGAAAGAGGATGACCTCA
GTCAATGGCGTAACATCGTATTTCaggttttctgtcaaaatagAAATTAA
GGAAGAATAAGATAGTTTGTCGAGATCTCTGAATTGGAGAACCATTTACA
GTTTTGGTTCATATGACAGTTTTAGATATTGTGACGAAGGGAAGTTAGGC
GATTGGGGTCACCCTTTAGTTATTGAGGGGACCTCTCAGATCACTTATCT
GTTCCTTCGATCAGGGTATCCCTTATTGGGGATAAGTCTATGGGCACGTA
GTAAAGGTACGCTAATAGATTTCAATCAACATCAATTCTGTTTCTCCAAT
TAAgcaataaatatcaaataagCATCAAATAAATTAGTAACTCTGGCATA
TAATTAACGATAGTCTCTGTTCAAGTCCTTCTCCTTCAAGTTCTCCCTTT
CAAGTCCctgatttctttccttttctcaCTCATAATCTCTCGCCCTATTC
AGAGGTCTGAGCTCGAGGGCCTGAGCCCCACTCTATTGATGTCTATTCAT
TTTTCAGTTCATTAACATCGTGTTGGCTCAGTCCCAACCTCCTTTGCATT
ATTCATTTTCGTTTAc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072685-exon-scaffold_82-1491911889:234747..235168 | TCONS_00072685-exon-scaffold_82-1491911889:234747..235168 | Clytia hemisphaerica | exon |
| TCONS_00072685-exon-scaffold_82-1510915933:234747..235168 | TCONS_00072685-exon-scaffold_82-1510915933:234747..235168 | Clytia hemisphaerica | exon |
| TCONS_00072685-exon-scaffold_82-1575043694:234747..235168 | TCONS_00072685-exon-scaffold_82-1575043694:234747..235168 | Clytia hemisphaerica | exon |
| TCONS_00072685-exon-scaffold_82-1491911889:235561..236862 | TCONS_00072685-exon-scaffold_82-1491911889:235561..236862 | Clytia hemisphaerica | exon |
| TCONS_00072685-exon-scaffold_82-1510915933:235561..236862 | TCONS_00072685-exon-scaffold_82-1510915933:235561..236862 | Clytia hemisphaerica | exon |
| TCONS_00072685-exon-scaffold_82-1575043694:235561..236862 | TCONS_00072685-exon-scaffold_82-1575043694:235561..236862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:234747..236862 + |
Blast
The following BLAST results are available for this feature:
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