TCONS_00072684 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072684
Unique NameTCONS_00072684
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length899

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072684 ID=TCONS_00072684|Name=TCONS_00072684|organism=Clytia hemisphaerica|type=transcript|length=899bp
cCTATAGTTCGCTCTGTTTTATTTCTTTCATCTCTAAAAGtgaacgatat
catccaccaaaTGGTGAAAAATTGTAATATTGTCGTCATCATTGACTATT
TAATTGGCGAATGTATTGACTATCACAGATGGAAACTACAAACTATTTTC
GTTTTGAATGAAGTCATCAAATCTAGCCAGCAATTAAAAGCATTCAACGC
CGAGCCTTACATCGACCAAATCTCTTCCATTTACTTACAAGACCACTTAT
GGAGGGTTCCCATCTCAAACCAGTACCTTCAATTCATCGGAACTCGACAA
GGACAAAAAAATGAGGCTATAAACTCTGTAACTTTTGAGAGTTTATCACT
TACCGACATCGACAAGCCTCAAAATGAACCCTTATTTTCACAAAATGAAC
CCTTATTTTCATATGAAAAACAGTCTGACCTTACCCTTTGAAACTATTAA
TCATAACATTTAATTGATATGCTTACTGTTGGAAGGCTTTTCTACACACT
CGTATATTTTAAGGACCAACTATAACATACATCTCATCAAAACGCTATAT
CCTATCCTGGAGGAGGTTGGATCTACCAATGCAACTATCAACAAAACAGC
TTTATAAACTTTAAACAACATTTCAATGTATTGTAACTATGATTCGTTAT
CAGATTTGATCCTATTCAACTCGGATTATCTCATCGATGCAGTGACCCTC
CAGTTCCGTCACATAATGATCGACTCCGCCGCGCCGGGTGTTTTAGCCGT
CATTCTGAGACTCTGTGATAAAGACATTATGCCGATAGTATGTGATTCTG
CCGCTGATGTATTTCGTCTACTTGATGAATACCAAGAAGAAATTGATATT
CAAATGTTGGAGATTTTAGCTGTCAACAAATGGTTTTGCTCTAATAAAA
Run BLAST on NCBI

protein sequence of TCONS_00072684-protein

>TCONS_00072684-protein ID=TCONS_00072684-protein|Name=TCONS_00072684-protein|organism=Clytia hemisphaerica|type=polypeptide|length=146bp
PIVRSVLFLSSLKVNDIIHQMVKNCNIVVIIDYLIGECIDYHRWKLQTIF
VLNEVIKSSQQLKAFNAEPYIDQISSIYLQDHLWRVPISNQYLQFIGTRQ
GQKNEAINSVTFESLSLTDIDKPQNEPLFSQNEPLFSYEKQSDLTL
Run BLAST on NCBI

transcript from alignment at scaffold_82:183945..185678+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072684 ID=TCONS_00072684|Name=TCONS_00072684|organism=Clytia hemisphaerica|type=transcript|length=1734bp|location=Sequence derived from alignment at scaffold_82:183945..185678+ (Clytia hemisphaerica)
cCTATAGTTCGCTCTGTTTTATTTCTTTCATCTCTAAAAGtgaacgatat
catccaccaaaTGGTGAAAAATTGTAATATTGTCGTCATCATTGACTATT
TAATTGGCGAATGTATTGACTATCACAGATGGAAACTACAAACTATTTTC
GTTTTGAATGAAGTCATCAAATCTAGCCAGCAATTAAAAGGTAattacgt
ttttttatgagaacaacaACATAAAAAATAGTTGggtttctttaattcga
atctcttagctctagtttaatcggccgactttctgccctgcttattctaa
ttgttagagtaggcaaaaagagggcacaaagttggttgttaaaatctttg
cttggaaaggtttgaaagaagacattgccattgacgtcaaaagaaggcta
tgcatcactttagacagcccactttatgccctctttaattcacaattaga
ataggcagggcaaaaagtgggccgtctaaactagagcttatactcgaatg
tctcctcaaGTCGAACAAGCTTTCTAGTCCCTTCAGTTAGCACGACCTTA
CTGGGTATATCGAAATTCCCTTGTGGACAAAttcgtgttcgagttatgga
gactccactggaGCTGTATGAATTCTGGCCCGATccctttttttatgaga
atgaTATGAGTTTCATATTTCAGAAATAATTTTGACTAAATAATCAGTAT
CttgataaaaaagtaatttgGGAAATTTCTTTTGGAATTTCAAAGAGGTT
CGATTGATAGGAATGATCTTAATTTCTGGGACTTTCTTGAAGTGAGACTA
GAGAATAAGTTCGAATTTTAGAAAGATTCAATTAATTTAGGCTCGAATTA
TAGCAAGTCACACTTTCTTTGTTATAAAGGGTGGCAGAAAAATAATTCGA
CTGGTTTAATGTTTTAAATATAATTCCTAGACTGGATTCATTACCAGTAT
CTCAAATCCAAATCTGAGAGTAATCGTTTAATATTTACTTATTATAAATA
TCTTTGTGCCATTTCCTACTTTTAGCATTCAACGCCGAGCCTTACATCGA
CCAAATCTCTTCCATTTACTTACAAGACCACTTATGGAGGGTTCCCATCT
CAAACCAGTACCTTCAATTCATCGGAACTCGACAAGGACAAAAAAATGAG
GCTATAAACTCTGTAACTTTTGAGAGTTTATCACTTACCGACATCGACAA
GCCTCAAAATGAACCCTTATTTTCACAAAATGAACCCTTATTTTCATATG
AAAAACAGTCTGACCTTACCCTTTGAAACTATTAATCATAACATTTAATT
GATATGCTTACTGTTGGAAGGCTTTTCTACACACTCGTATATTTTAAGGA
CCAACTATAACATACATCTCATCAAAACGCTATATCCTATCCTGGAGGAG
GTTGGATCTACCAATGCAACTATCAACAAAACAGCTTTATAAACTTTAAA
CAACATTTCAATGTATTGTAACTATGATTCGTTATCAGATTTGATCCTAT
TCAACTCGGATTATCTCATCGATGCAGTGACCCTCCAGTTCCGTCACATA
ATGATCGACTCCGCCGCGCCGGGTGTTTTAGCCGTCATTCTGAGACTCTG
TGATAAAGACATTATGCCGATAGTATGTGATTCTGCCGCTGATGTATTTC
GTCTACTTGATGAATACCAAGAAGAAATTGATATTCAAATGTTGGAGATT
TTAGCTGTCAACAAATGGTTTTGCTCTAATAAAA

Coding sequence (CDS) from alignment at scaffold_82:183945..185678+

>TCONS_00072684 ID=TCONS_00072684|Name=TCONS_00072684|organism=Clytia hemisphaerica|type=CDS|length=882bp|location=Sequence derived from alignment at scaffold_82:183945..185678+ (Clytia hemisphaerica)
cCTATAGTTCGCTCTGTTTTATTTCTTTCATCTCTAAAAGtgaacgatat
catccaccaaaTGGTGAAAAATTGTAATATTGTCGTCATCATTGACTATT
TAATTGGCGAATGTATTGACTATCACAGATGGAAACTACAAACTATTTTC
GTTTTGAATGAAGTCATCAAATCTAGCCAGCAATTAAAAGCATTCAACGC
CGAGCCTTACATCGACCAAATCTCTTCCATTTACTTACAAGACCACTTAT
GGAGGGTTCCCATCTCAAACCAGTACCTTCAATTCATCGGAACTCGACAA
GGACAAAAAAATGAGGCTATAAACTCTGTAACTTTTGAGAGTTTATCACT
TACCGACATCGACAAGCCTCAAAATGAACCCTTATTTTCACAAAATGAAC
CCTTATTTTCATATGAAAAACAGTCTGACCTTACCCTTTGAcCTATAGTT
CGCTCTGTTTTATTTCTTTCATCTCTAAAAGtgaacgatatcatccacca
aaTGGTGAAAAATTGTAATATTGTCGTCATCATTGACTATTTAATTGGCG
AATGTATTGACTATCACAGATGGAAACTACAAACTATTTTCGTTTTGAAT
GAAGTCATCAAATCTAGCCAGCAATTAAAAGCATTCAACGCCGAGCCTTA
CATCGACCAAATCTCTTCCATTTACTTACAAGACCACTTATGGAGGGTTC
CCATCTCAAACCAGTACCTTCAATTCATCGGAACTCGACAAGGACAAAAA
AATGAGGCTATAAACTCTGTAACTTTTGAGAGTTTATCACTTACCGACAT
CGACAAGCCTCAAAATGAACCCTTATTTTCACAAAATGAACCCTTATTTT
CATATGAAAAACAGTCTGACCTTACCCTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045116XLOC_045116Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072684-proteinTCONS_00072684-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072684-exon-scaffold_82-1491911889:183945..184134TCONS_00072684-exon-scaffold_82-1491911889:183945..184134Clytia hemisphaericaexon
TCONS_00072684-exon-scaffold_82-1510915933:183945..184134TCONS_00072684-exon-scaffold_82-1510915933:183945..184134Clytia hemisphaericaexon
TCONS_00072684-exon-scaffold_82-1575043694:183945..184134TCONS_00072684-exon-scaffold_82-1575043694:183945..184134Clytia hemisphaericaexon
TCONS_00072684-exon-scaffold_82-1491911889:184970..185678TCONS_00072684-exon-scaffold_82-1491911889:184970..185678Clytia hemisphaericaexon
TCONS_00072684-exon-scaffold_82-1510915933:184970..185678TCONS_00072684-exon-scaffold_82-1510915933:184970..185678Clytia hemisphaericaexon
TCONS_00072684-exon-scaffold_82-1575043694:184970..185678TCONS_00072684-exon-scaffold_82-1575043694:184970..185678Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:183945..185678 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.26053	2.8263	4.64508	4.72263	2.08281	1.73536	2.22425	2.61951	0.989444	0.712857	1.23386	0.824221	0.890898	0.499021	1.48413	1.7618	2.03586	1.7777	0.511355	1.17555	1.26053	0.903857	5.00927	4.13962	2.67389	3.36846	0.72522	0.672653	2.40372	3.24916
Blast
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BLAST of TCONS_00072684 vs. Swiss-Prot (Human)
Match: TTI1 (TELO2-interacting protein 1 homolog OS=Homo sapiens GN=TTI1 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 2.092e-21
Identity = 53/153 (34.64%), Postives = 87/153 (56.86%), Query Frame = 2 
Query:  443 TINHNXXXXXXXXEGFSTHSYILRTNYNIHLIKTLYPILEEVGSTNATINKTAL*TLNNISMYCNYDSLSDLILFNSDYLIDAVTLQFRHIMIDSAAPGVLAVILRLCDKDIMPIVCDSAADVFRLLDEYQEEIDIQMLEIL-----AVNKWF 886
            ++N NI  IC+ LEG    +Y L  ++ + L+  LYP+LE+ G     I++ A  T+ ++   C YDSL  LI  NSDYL++ ++L  RH+ +    P VL V+LR  D +++P+V D   DV   LD++ ++     + +L     A+ +WF
Sbjct:  619 SMNSNIWQICIQLEGIGQFAYALGKDFCLLLMSALYPVLEKAGDQTLLISQVATSTMMDVCRACGYDSLQHLINQNSDYLVNGISLNLRHLALHPHTPKVLEVMLRNSDANLLPLVADVVQDVLATLDQFYDKRAASFVSVLHALMAALAQWF 771
The following BLAST results are available for this feature:
BLAST of TCONS_00072684 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TTI12.092e-2134.64TELO2-interacting protein 1 homolog OS=Homo sapien... [more]
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