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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=transcript|length=612bp
GTATATCCTGCTATTATCGATGGGCCGGATGTGGTATGAGGAAAGATTCT
CATTTTCAAGATGGACACTTCCTTGTCTCATTGCTGTATAAAAAGTCGGA
GTTTCAACTTCCAAAATTATTCAACTTGCTCAAGCAAGCAAGACAATCAA
CAGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACG
CAGTACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgat
caacaacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtc
atcacaagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACG
AAGtcaaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGG
TGGCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACG
ATTTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACG
GAGGCGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAA
TACCCTCACAACAAACGCTATGGAAAATAATTCATCTCGCGACATGACAT
TGATATTGTAAT Run BLAST on NCBI protein sequence of TCONS_00072683-protein >TCONS_00072683-protein ID=TCONS_00072683-protein|Name=TCONS_00072683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MKIWKALLLLALCVYAVHCTEESEQQDNTLDDQQQQDEEDDQSQGMMTSS
QDEEDIVEQDESSLDEVKDEEADLNDPKPLLWWRRRRRRRRRRHGFRRRF
GFRRRRPYYLGGYPNGGGYPYGGYPYGPDGRQYPHNKRYGK Run BLAST on NCBI transcript from alignment at scaffold_82:180975..182046+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_82:180975..182046+ (Clytia hemisphaerica)
GTATATCCTGCTATTATCGATGGGCCGGATGTGGTATGAGGAAAGATTCT
CATTTTCAAGATGGACACTTCCTTGTCTCATTGCTGTATAAAAAGTCGGA
GTTTCAACTTCCAAAATTATTCAACTTGCTCAAGCAAGCAAGACAATCAA
CAGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACG
CAGTACACTGTAAGTTTTACAATTTATTTCACCTTCCAAATCGAATCTTT
GTAACTTGTCGTTAACAGAACAGATACTATTTCAAGGCGACGAGAATAAA
TGTTTTTAGTCATtcatttcgaatttttttgtctACATTTTGATAAATCA
TGTTTGTCGTAATAATTATATCAGGTACTGAAGAGAGCGAACAACAAGAC
AATACTCTCGAcgatcaacaacaacaagatgAAGAAGACGACCAATCGCA
AggcatgatgacgtcatcacaagaTGAAGAAGATATCGTGGAGCAAGATG
AAAGCTCATTGGACGAAGtcaaagatgaagaaggtaTGTTGTAAATCCTA
AAATCCATTGGAGAGCTCCGTTTCATCTTTATTCTATATTGCCTGGTTTC
CTGGTCTCTTTACATGTTCACTTGCTTTCTCTACTTATATCAGACTTAGA
TTACAACTTAAGGATCAGCTTGGCTTTTGCCTTCTATAGAATCTGAATGT
TACATTATTCTTCTTTCTTGGAAGTGATTAGAAATGATCTTGTGTCCACC
ACAAGTTATGCGATAGAATTTGTTTTTGATTATTGTGAGATCTGACTTCA
ACAATTTGTTGAAATTATTTCAATACAGCAGACCTGAACGATCCGAAACC
GTTGCTATGGTGGCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTT
TCCGAAGACGATTTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGA
TATCCAAACGGAGGCGGTTACCCATACGGCGGATACCCTTACGGACCTGA
CGGACGTCAATACCCTCACAACAAACGCTATGGAAAATAATTCATCTCGC
GACATGACATTGATATTGTAAT Coding sequence (CDS) from alignment at scaffold_82:180975..182046+ >TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_82:180975..182046+ (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCAGT
ACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgatcaac
aacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtcatca
caagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGAAGt
caaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGGTGGC
GACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACGATTT
GGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACGGAGG
CGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAATACC
CTCACAACAAACGCTATGGAAAATAAATGAAGATTTGGAAAGCTTTGCTG
CTTTTGGCACTTTGTGTCTACGCAGTACACTGTACTGAAGAGAGCGAACA
ACAAGACAATACTCTCGAcgatcaacaacaacaagatgAAGAAGACGACC
AATCGCAAggcatgatgacgtcatcacaagaTGAAGAAGATATCGTGGAG
CAAGATGAAAGCTCATTGGACGAAGtcaaagatgaagaagCAGACCTGAA
CGATCCGAAACCGTTGCTATGGTGGCGACGTCGCCGACGAAGACGTCGAA
GACGACACGGTTTCCGAAGACGATTTGGTTTCAGAAGACGTCGCCCTTAT
TACCTGGGTGGATATCCAAACGGAGGCGGTTACCCATACGGCGGATACCC
TTACGGACCTGACGGACGTCAATACCCTCACAACAAACGCTATGGAAAAT
AAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCA
GTACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgatca
acaacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtcat
cacaagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGAA
GtcaaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGGTG
GCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACGAT
TTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACGGA
GGCGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAATA
CCCTCACAACAAACGCTATGGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072683-exon-scaffold_82-1491911889:180975..181183 | TCONS_00072683-exon-scaffold_82-1491911889:180975..181183 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1510915933:180975..181183 | TCONS_00072683-exon-scaffold_82-1510915933:180975..181183 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1575043694:180975..181183 | TCONS_00072683-exon-scaffold_82-1575043694:180975..181183 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1491911889:181349..181507 | TCONS_00072683-exon-scaffold_82-1491911889:181349..181507 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1510915933:181349..181507 | TCONS_00072683-exon-scaffold_82-1510915933:181349..181507 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1575043694:181349..181507 | TCONS_00072683-exon-scaffold_82-1575043694:181349..181507 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1491911889:181803..182046 | TCONS_00072683-exon-scaffold_82-1491911889:181803..182046 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1510915933:181803..182046 | TCONS_00072683-exon-scaffold_82-1510915933:181803..182046 | Clytia hemisphaerica | exon |
| TCONS_00072683-exon-scaffold_82-1575043694:181803..182046 | TCONS_00072683-exon-scaffold_82-1575043694:181803..182046 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_82 | supercontig | scaffold_82:180975..182046 + |
Blast
The following BLAST results are available for this feature:
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