TCONS_00072683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072683
Unique NameTCONS_00072683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=transcript|length=612bp
GTATATCCTGCTATTATCGATGGGCCGGATGTGGTATGAGGAAAGATTCT
CATTTTCAAGATGGACACTTCCTTGTCTCATTGCTGTATAAAAAGTCGGA
GTTTCAACTTCCAAAATTATTCAACTTGCTCAAGCAAGCAAGACAATCAA
CAGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACG
CAGTACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgat
caacaacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtc
atcacaagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACG
AAGtcaaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGG
TGGCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACG
ATTTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACG
GAGGCGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAA
TACCCTCACAACAAACGCTATGGAAAATAATTCATCTCGCGACATGACAT
TGATATTGTAAT
Run BLAST on NCBI

protein sequence of TCONS_00072683-protein

>TCONS_00072683-protein ID=TCONS_00072683-protein|Name=TCONS_00072683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=141bp
MKIWKALLLLALCVYAVHCTEESEQQDNTLDDQQQQDEEDDQSQGMMTSS
QDEEDIVEQDESSLDEVKDEEADLNDPKPLLWWRRRRRRRRRRHGFRRRF
GFRRRRPYYLGGYPNGGGYPYGGYPYGPDGRQYPHNKRYGK
Run BLAST on NCBI

transcript from alignment at scaffold_82:180975..182046+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=transcript|length=1072bp|location=Sequence derived from alignment at scaffold_82:180975..182046+ (Clytia hemisphaerica)
GTATATCCTGCTATTATCGATGGGCCGGATGTGGTATGAGGAAAGATTCT CATTTTCAAGATGGACACTTCCTTGTCTCATTGCTGTATAAAAAGTCGGA GTTTCAACTTCCAAAATTATTCAACTTGCTCAAGCAAGCAAGACAATCAA CAGAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACG CAGTACACTGTAAGTTTTACAATTTATTTCACCTTCCAAATCGAATCTTT GTAACTTGTCGTTAACAGAACAGATACTATTTCAAGGCGACGAGAATAAA TGTTTTTAGTCATtcatttcgaatttttttgtctACATTTTGATAAATCA TGTTTGTCGTAATAATTATATCAGGTACTGAAGAGAGCGAACAACAAGAC AATACTCTCGAcgatcaacaacaacaagatgAAGAAGACGACCAATCGCA AggcatgatgacgtcatcacaagaTGAAGAAGATATCGTGGAGCAAGATG AAAGCTCATTGGACGAAGtcaaagatgaagaaggtaTGTTGTAAATCCTA AAATCCATTGGAGAGCTCCGTTTCATCTTTATTCTATATTGCCTGGTTTC CTGGTCTCTTTACATGTTCACTTGCTTTCTCTACTTATATCAGACTTAGA TTACAACTTAAGGATCAGCTTGGCTTTTGCCTTCTATAGAATCTGAATGT TACATTATTCTTCTTTCTTGGAAGTGATTAGAAATGATCTTGTGTCCACC ACAAGTTATGCGATAGAATTTGTTTTTGATTATTGTGAGATCTGACTTCA ACAATTTGTTGAAATTATTTCAATACAGCAGACCTGAACGATCCGAAACC GTTGCTATGGTGGCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTT TCCGAAGACGATTTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGA TATCCAAACGGAGGCGGTTACCCATACGGCGGATACCCTTACGGACCTGA CGGACGTCAATACCCTCACAACAAACGCTATGGAAAATAATTCATCTCGC GACATGACATTGATATTGTAAT

Coding sequence (CDS) from alignment at scaffold_82:180975..182046+

>TCONS_00072683 ID=TCONS_00072683|Name=TCONS_00072683|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_82:180975..182046+ (Clytia hemisphaerica)
ATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCAGT
ACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgatcaac
aacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtcatca
caagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGAAGt
caaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGGTGGC
GACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACGATTT
GGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACGGAGG
CGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAATACC
CTCACAACAAACGCTATGGAAAATAAATGAAGATTTGGAAAGCTTTGCTG
CTTTTGGCACTTTGTGTCTACGCAGTACACTGTACTGAAGAGAGCGAACA
ACAAGACAATACTCTCGAcgatcaacaacaacaagatgAAGAAGACGACC
AATCGCAAggcatgatgacgtcatcacaagaTGAAGAAGATATCGTGGAG
CAAGATGAAAGCTCATTGGACGAAGtcaaagatgaagaagCAGACCTGAA
CGATCCGAAACCGTTGCTATGGTGGCGACGTCGCCGACGAAGACGTCGAA
GACGACACGGTTTCCGAAGACGATTTGGTTTCAGAAGACGTCGCCCTTAT
TACCTGGGTGGATATCCAAACGGAGGCGGTTACCCATACGGCGGATACCC
TTACGGACCTGACGGACGTCAATACCCTCACAACAAACGCTATGGAAAAT
AAATGAAGATTTGGAAAGCTTTGCTGCTTTTGGCACTTTGTGTCTACGCA
GTACACTGTACTGAAGAGAGCGAACAACAAGACAATACTCTCGAcgatca
acaacaacaagatgAAGAAGACGACCAATCGCAAggcatgatgacgtcat
cacaagaTGAAGAAGATATCGTGGAGCAAGATGAAAGCTCATTGGACGAA
GtcaaagatgaagaagCAGACCTGAACGATCCGAAACCGTTGCTATGGTG
GCGACGTCGCCGACGAAGACGTCGAAGACGACACGGTTTCCGAAGACGAT
TTGGTTTCAGAAGACGTCGCCCTTATTACCTGGGTGGATATCCAAACGGA
GGCGGTTACCCATACGGCGGATACCCTTACGGACCTGACGGACGTCAATA
CCCTCACAACAAACGCTATGGAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045115XLOC_045115Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072683-proteinTCONS_00072683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072683-exon-scaffold_82-1491911889:180975..181183TCONS_00072683-exon-scaffold_82-1491911889:180975..181183Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1510915933:180975..181183TCONS_00072683-exon-scaffold_82-1510915933:180975..181183Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1575043694:180975..181183TCONS_00072683-exon-scaffold_82-1575043694:180975..181183Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1491911889:181349..181507TCONS_00072683-exon-scaffold_82-1491911889:181349..181507Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1510915933:181349..181507TCONS_00072683-exon-scaffold_82-1510915933:181349..181507Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1575043694:181349..181507TCONS_00072683-exon-scaffold_82-1575043694:181349..181507Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1491911889:181803..182046TCONS_00072683-exon-scaffold_82-1491911889:181803..182046Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1510915933:181803..182046TCONS_00072683-exon-scaffold_82-1510915933:181803..182046Clytia hemisphaericaexon
TCONS_00072683-exon-scaffold_82-1575043694:181803..182046TCONS_00072683-exon-scaffold_82-1575043694:181803..182046Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_82supercontigscaffold_82:180975..182046 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.60579 2.1309 1.29864 1.63981 0.356157 0.764656 1.95235 1.19363 746.819 518.562 47.6419 2006.31 14.115 26.2438 3888.2 543.172 1.20861 1.21029 3.68624 1.70554 0.379809 0.642116 1.121 0.420462 0.398757 0.306642 0.309243 0 0.511538 0.525968
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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