TCONS_00072632 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072632
Unique NameTCONS_00072632
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length567

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072632 ID=TCONS_00072632|Name=TCONS_00072632|organism=Clytia hemisphaerica|type=transcript|length=567bp
AAAACTCACCAAACTTCGAACCCAGGAGTATAATCAAACCACGCCCTCAA
ACTGTCCAAGAGGGTGATGATTTACACATCTACTGTTATGCTAGCGCCCA
TCCACGCCCTTTGATCACATGGGAGAAAGATGGCGTCAAATTAAGTGATT
CTACGAAAGTTTCTATCGATATTGAGAGGCTGACTGTGGTTAGTGTGTCG
AGTGCGGACTGGGGACGATATTCGTGTGTTATCAATGGCAACGAGAAATA
CCGATATGACGCTTTTGTTAAAGTTAAAGTACCTCTAGCTTTCATCGAAA
AACCGGAAACCATCCACGTCAAGGACGATCAAACATCTGCACGATTCAAA
TGTAAAGCTATCGGTTCAATGCCCATCATTTACCATTGGTTCAAAAACGG
TCAAAAGCTTTCGTCAGAGACTGATGTCACCATAACGAGTGGTGAGAAAG
GTGTTGGCAGTGTCTTAGAGATTCAAGATATTGATGTAAAGGATGAAGGA
TCTTACCAATGCTTTGCTTTCAACCATTTTGAAAGTGTTCAACATTCAGT
TCAACTCGTTGTAGATT
Run BLAST on NCBI

protein sequence of TCONS_00072632-protein

>TCONS_00072632-protein ID=TCONS_00072632-protein|Name=TCONS_00072632-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
NSPNFEPRSIIKPRPQTVQEGDDLHIYCYASAHPRPLITWEKDGVKLSDS
TKVSIDIERLTVVSVSSADWGRYSCVINGNEKYRYDAFVKVKVPLAFIEK
PETIHVKDDQTSARFKCKAIGSMPIIYHWFKNGQKLSSETDVTITSGEKG
VGSVLEIQDIDVKDEGSYQCFAFNHFESVQHSVQLVVD
Run BLAST on NCBI

transcript from alignment at scaffold_80:160763..161640-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072632 ID=TCONS_00072632|Name=TCONS_00072632|organism=Clytia hemisphaerica|type=transcript|length=878bp|location=Sequence derived from alignment at scaffold_80:160763..161640- (Clytia hemisphaerica)
AAAACTCACCAAACTTCGAACCCAGGAGTATAATCAAACCACGCCCTCAA
ACTGTCCAAGAGGGTGATGATTTACACATCTACTGTTATGCTAGCGCCCA
TCCACGCCCTTTGATCACATGGGAGAAAGATGGCGTCAAATTAAGTGATT
CTACGAAAGTTTCTATCGATATTGAGAGGCTGACTGTGGTTAGTGTGTCG
AGTGCGGACTGGGGACGATATTCGTGTGTTATCAATGGCAACGAGAAATA
CCGATATGACGCTTTTGTTAAAGTTAAAGGTAGATATTTTTAATTTTGAT
ACCACGAGTCAATGCAATTCTTTGAAGGTAGTACGAAATTTGCAGAACTC
TGATTCAAATAGAGAATCTGTAAACAGATGATTCAAGGTGAAGTTTTTGT
GTGAATCTTCTCGGTAAACCAGCAAATATAAAACATAAGAATTTTCATGA
CAAGCTAATCACCAACTGTTTCGAAGCAGTGTCAACCAGATTATAGAAAG
CCTAAGCAACGCCCCAATAAGTGCTTATCTACAAAACGTTAGATGAAACA
ACGAACGCCAGTCTTATATACTCTCTTTCTTTGCTTCCAGTACCTCTAGC
TTTCATCGAAAAACCGGAAACCATCCACGTCAAGGACGATCAAACATCTG
CACGATTCAAATGTAAAGCTATCGGTTCAATGCCCATCATTTACCATTGG
TTCAAAAACGGTCAAAAGCTTTCGTCAGAGACTGATGTCACCATAACGAG
TGGTGAGAAAGGTGTTGGCAGTGTCTTAGAGATTCAAGATATTGATGTAA
AGGATGAAGGATCTTACCAATGCTTTGCTTTCAACCATTTTGAAAGTGTT
CAACATTCAGTTCAACTCGTTGTAGATT

Coding sequence (CDS) from alignment at scaffold_80:160763..161640-

>TCONS_00072632 ID=TCONS_00072632|Name=TCONS_00072632|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at scaffold_80:160763..161640- (Clytia hemisphaerica)
TACCTCTAGCTTTCATCGAAAAACCGGAAACCATCCACGTCAAGGACGAT
CAAACATCTGCACGATTCAAATGTAAAGCTATCGGTTCAATGCCCATCAT
TTACCATTGGTTCAAAAACGGTCAAAAGCTTTCGTCAGAGACTGATGTCA
CCATAACGAGTGGTGAGAAAGGTGTTGGCAGTGTCTTAGAGATTCAAGAT
ATTGATGTAAAGGATGAAGGATCTTACCAATGCTTTGCTTTCAACCATTT
TGAAAGTGTTCAACATTCAGTTCAACTCGTTGTAGATAACTCACCAAACT
TCGAACCCAGGAGTATAATCAAACCACGCCCTCAAACTGTCCAAGAGGGT
GATGATTTACACATCTACTGTTATGCTAGCGCCCATCCACGCCCTTTGAT
CACATGGGAGAAAGATGGCGTCAAATTAAGTGATTCTACGAAAGTTTCTA
TCGATATTGAGAGGCTGACTGTGGTTAGTGTGTCGAGTGCGGACTGGGGA
CGATATTCGTGTGTTATCAATGGCAACGAGAAATACCGATATGACGCTTT
TGTTAAAGTTAAAGTACCTCTAGCTTTCATCGAAAAACCGGAAACCATCC
ACGTCAAGGACGATCAAACATCTGCACGATTCAAATGTAAAGCTATCGGT
TCAATGCCCATCATTTACCATTGGTTCAAAAACGGTCAAAAGCTTTCGTC
AGAGACTGATGTCACCATAACGAGTGGTGAGAAAGGTGTTGGCAGTGTCT
TAGAGATTCAAGATATTGATGTAAAGGATGAAGGATCTTACCAATGCTTT
GCTTTCAACCATTTTGAAAGTGTTCAACATTCAGTTCAACTCGTTGTAGA
TAACTCACCAAACTTCGAACCCAGGAGTATAATCAAACCACGCCCTCAAA
CTGTCCAAGAGGGTGATGATTTACACATCTACTGTTATGCTAGCGCCCAT
CCACGCCCTTTGATCACATGGGAGAAAGATGGCGTCAAATTAAGTGATTC
TACGAAAGTTTCTATCGATATTGAGAGGCTGACTGTGGTTAGTGTGTCGA
GTGCGGACTGGGGACGATATTCGTGTGTTATCAATGGCAACGAGAAATAC
CGATATGACGCTTTTGTTAAAGTTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045083XLOC_045083Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072632-proteinTCONS_00072632-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072632-exon-scaffold_80-1575043694:161362..161640TCONS_00072632-exon-scaffold_80-1575043694:161362..161640Clytia hemisphaericaexon
TCONS_00072632-exon-scaffold_80-1575043694:160763..161050TCONS_00072632-exon-scaffold_80-1575043694:160763..161050Clytia hemisphaericaexon
TCONS_00072632-exon-scaffold_80-1510915933:161362..161640TCONS_00072632-exon-scaffold_80-1510915933:161362..161640Clytia hemisphaericaexon
TCONS_00072632-exon-scaffold_80-1510915933:160763..161050TCONS_00072632-exon-scaffold_80-1510915933:160763..161050Clytia hemisphaericaexon
TCONS_00072632-exon-scaffold_80-1491911889:161362..161640TCONS_00072632-exon-scaffold_80-1491911889:161362..161640Clytia hemisphaericaexon
TCONS_00072632-exon-scaffold_80-1491911889:160763..161050TCONS_00072632-exon-scaffold_80-1491911889:160763..161050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:160763..161640 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.363951	0.149824	0.224412	0.219552	7.90858	6.44673	11.8633	15.0904	3.5208	3.3815	4.9754	2.19088	3.20676	3.1959	0.562722	1.52237	0.96712	1.91388	7.9941	7.53859	2.8469	3.12208	0.454504	1.71334	1.48959	1.93326	1.03656	0.580083	1.93414	2.72827
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072632 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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