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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072631 ID=TCONS_00072631|Name=TCONS_00072631|organism=Clytia hemisphaerica|type=transcript|length=4923bpRun BLAST on NCBI protein sequence of TCONS_00072631-protein >TCONS_00072631-protein ID=TCONS_00072631-protein|Name=TCONS_00072631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1542bp MAMSGRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLHRun BLAST on NCBI transcript from alignment at scaffold_80:149536..160203- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072631 ID=TCONS_00072631|Name=TCONS_00072631|organism=Clytia hemisphaerica|type=transcript|length=10668bp|location=Sequence derived from alignment at scaffold_80:149536..160203- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_80:149536..160203- >TCONS_00072631 ID=TCONS_00072631|Name=TCONS_00072631|organism=Clytia hemisphaerica|type=CDS|length=74064bp|location=Sequence derived from alignment at scaffold_80:149536..160203- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072631 vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2) HSP 1 Score: 446.047 bits (1146), Expect = 9.335e-129 Identity = 311/1020 (30.49%), Postives = 492/1020 (48.24%), Query Frame = 3
Query: 15 GRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVT-SSQSMKVLSNGTLLIGSFSAN-EEGEFECHA--QNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDG-----ILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYKHSTSLACLATGFPAPQIIWM--KKSPDDFFEPIQLSNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVLNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTMVAIAKDKFLLQWKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTE---YTLTNLYQYTAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAIPQNAVNGVLKGYTVQY----TDIERSEHYQTTVKGLQASLTNLKAFTRYQIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKNGIILNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTSKGEGNFTEHRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKPMITW---SNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKNHVFYIIENQHFDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGSMT 3008
G Y+C N G+ I + G I +++ + G+ +HC V G P ++W + + + + + + +NGTL + +EGE+ C+ Q TS+ V+V PP I P + G RV C G +TITW KDG L ID I+ +TS++ I ++ H+G YTCIARN A + +V F +P+D +Y + L C A G+P P I+W K + F+PI L+ R+Q L+NG+L I D G Y CK D V S++ ++ VK+PA ++ S P +G + C+ G + V+W +I+ ++Y + T E +G + STL I + D+ + C N YG ++ + V+E P P I + D ++ L WT G++GN I+ Y I+ K ++D W AQ T V+ ++++HP + Y +R+ AKNRIG S+ S+ + E AP PPQ V + I+ + WK P K +NGI+ YQI + S+ + I+++ + + YTL NL ++T Y + +QA + G GP S + TTLE VPS P +V+A A S I I+W + + A+NG+L+G+ V Y D E E T L L+ +T Y I+V A+T+ G GV S + T ED PG PA KA A+ + ++W PPL+ NGII Y ++ + + P YRI +L R+Y+ W+ AVTS G GN +E PARI+T + P D+ LPC AVG P P + W SN PS ++ RR + + ++ + + G Y+C A N++GSD ++ L+VQVPP P S ++ ++W+ G NGGS +I+ ++ E+ W + + + + N+ F ++++N +G G ++
Sbjct: 480 GVYRCTANNSAGVVLYQARINVRGPASIRPMKNIT-AIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLS-TSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLP-ITITWQKDGRPIPGSLGVTIDNID------FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSG-TVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVT-IDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSS-----SITLSWLPGDNGGS-SIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS 1463 HSP 2 Score: 93.2041 bits (230), Expect = 1.086e-18 Identity = 98/394 (24.87%), Postives = 169/394 (42.89%), Query Frame = 3
Query: 21 YQCLVENRVGLDSK-------YVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVTSSQSMKVLSNGTLLIGSFSANEEGEFECHAQNSFG--RTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDGILAN-----QIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYK------HSTSLACLATGFPAPQIIWMKKSPDDFFEPIQL--SNRVQQL--NNGT----LHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPA--RVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETN 1112
Y+C+ +R +++ +V+ P I D ++ + G+ + L C G P+P RW++ + S + G LLI + ++ G + C N +G + ++YVK ISP KV ++ GS+V +C+ ++D ++WY++G + N +I GI + N+ ++ + G Y C R + QD+V + L PK S + SL C G P P I W + DD +PI S+R+ Q+ + G L+I+ + D G Y C A ++ A I V+ PA R + + IA G D ++ C ++G S+KW+ N L+ + + E N
Sbjct: 195 YRCITRHRYTGETRQSNSARLFVSDPANSAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGRFQKTVTG-LLIENIRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSV-GSQVSLSCSVT--GTEDQELSWYRNGEILNPGKNVRITGINHE-------NLIMDHMVKSDGGAYQCFVRK---DKLSAQDYV--QVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITW---TLDD--DPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLY-------QARINVRGPASIRPMKNITAIA----GRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENN 556 The following BLAST results are available for this feature:
BLAST of TCONS_00072631 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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