|
Sequence
The following sequences are available for this feature:
polypeptide sequence >TCONS_00072631-protein ID=TCONS_00072631-protein|Name=TCONS_00072631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1542bp MAMSGRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLH CNVKGSPKPLVRWMRWGSRVTSSQSMKVLSNGTLLIGSFSANEEGEFECH AQNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDL TITWYKDGILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRA GEMSRFQDFVVYEKALFKDEPKDTSVLYKHSTSLACLATGFPAPQIIWMK KSPDDFFEPIQLSNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVF IPPKMSRTAHIKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVK WFMNGALIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYE CMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNL DISEYIIQIKRQNDESDLILWTDAQTYSVAVSSVPYRVLNLHPGTQYMVR VKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTMVAIAKDKFLLQWKHPS KTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTEYTLTNLYQYTAYKV QLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAI PQNAVNGVLKGYTVQYTDIERSEHYQTTVKGLQASLTNLKAFTRYQIRVS AYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKN GIILNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTS KGEGNFTEHRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKP MITWSNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGS DWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKN HVFYIIENQHFDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGS MTSSMKFIIAHSNNAFESGSVIQMYAAPLVAQKQNKKPSSLQRFLKPILI SAVAFVTLLMVLLLVASYDREEHRMREPRCSRLICRCSCKQHKEYNPAPY GEPGLLWPWNIKQNRHSGAFDMKDELLPNDTIEMKYCNGTAFNYNALQQN GNASGGSLGRPKMQNTNKFNDFEPVVLFTPSKTPDNHSFAAGNPQPKLSN GNKRGTGSDVGVRVAPPRTQANNNTAERPISSRYASTPSIIEKYFQSQEQ CGNTALKQNGYGNRFATGDDNVRNSILTEDSIDFTELDGGGVNSQKAAPK DNIQPLEQLPVSPPEYNELYSNEPETGDPSKPSPPNYRDIISSLSDYSDA PRALFRKEGEPPRRGKRNRKSLDSLLLKTLEDIEEQQILTNHANVSNTPA LERHVAIVRDALQKATRSFDSVSSTCSSSVGELRRAFEFGKKYGLQNYGE IPNYLQESMDDLTLDETNEEFDFAEHEKLLDLMALTNFSEQPRSSNDIAV KIPLPVRLTDSDEESDPDDLDEYEQDGLNGYVKKENPTLSLV Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
This polypeptide derives from the following transcript feature(s):
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR003961 | Fibronectin type III | SMART | SM00060 | FN3_2 | coord: 422..510 e-value: 3.2E-12 score: 56.6 coord: 723..804 e-value: 1.4E-7 score: 41.2 coord: 627..708 e-value: 2.9E-8 score: 43.5 coord: 526..611 e-value: 2.4E-9 score: 47.1 coord: 913..999 e-value: 26.0 score: 7.9 |
IPR003961 | Fibronectin type III | PFAM | PF00041 | fn3 | coord: 629..711 e-value: 1.1E-10 score: 41.6 coord: 427..513 e-value: 4.3E-11 score: 42.9 coord: 725..806 e-value: 1.5E-10 score: 41.2 coord: 527..614 e-value: 8.4E-14 score: 51.6 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 528..624 score: 22.769 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 725..819 score: 16.253 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 915..1012 score: 10.486 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 421..523 score: 19.377 |
IPR003961 | Fibronectin type III | PROSITE | PS50853 | FN3 | coord: 629..721 score: 18.493 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 527..621 e-value: 1.28424E-14 score: 70.9883 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 723..814 e-value: 1.15548E-11 score: 62.1287 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 629..718 e-value: 4.78065E-13 score: 66.3659 |
IPR003961 | Fibronectin type III | CDD | cd00063 | FN3 | coord: 422..520 e-value: 2.26891E-14 score: 70.2179 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 420..626 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 904..1008 |
IPR003961 | Fibronectin type III | SUPERFAMILY | 49265 | Fibronectin type III | coord: 626..819 |
IPR003598 | Immunoglobulin subtype 2 | SMART | SM00408 | igc2_5 | coord: 42..106 e-value: 1.4E-10 score: 51.2 coord: 330..408 e-value: 0.049 score: 19.7 coord: 833..899 e-value: 5.0E-6 score: 36.0 coord: 227..296 e-value: 0.0054 score: 26.0 coord: 131..201 e-value: 0.038 score: 20.8 |
IPR003599 | Immunoglobulin subtype | SMART | SM00409 | IG_3c | coord: 36..115 e-value: 0.0012 score: 28.2 coord: 827..910 e-value: 6.7E-7 score: 38.9 coord: 324..419 e-value: 2.6E-5 score: 33.7 coord: 125..214 e-value: 0.002 score: 27.4 coord: 221..316 e-value: 3.9 score: 15.0 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 716..823 e-value: 3.2E-18 score: 65.5 coord: 523..621 e-value: 1.0E-21 score: 76.8 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 214..314 e-value: 1.0E-12 score: 47.3 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 622..715 e-value: 7.0E-19 score: 67.5 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 424..522 e-value: 1.3E-19 score: 70.0 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 824..916 e-value: 1.3E-13 score: 50.6 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 32..121 e-value: 4.3E-18 score: 64.9 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 1..31 e-value: 0.01 score: 15.4 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 917..1035 e-value: 9.7E-5 score: 22.0 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 122..213 e-value: 2.3E-13 score: 49.8 |
IPR013783 | Immunoglobulin-like fold | GENE3D | 2.60.40.10 | | coord: 315..423 e-value: 2.5E-16 score: 59.1 |
IPR013098 | Immunoglobulin I-set | PFAM | PF07679 | I-set | coord: 324..414 e-value: 5.2E-9 score: 35.9 coord: 834..909 e-value: 3.5E-9 score: 36.5 coord: 36..114 e-value: 2.9E-13 score: 49.6 |
None | No IPR available | PFAM | PF13927 | Ig_3 | coord: 119..198 e-value: 2.0E-11 score: 44.2 coord: 221..291 e-value: 2.7E-7 score: 31.0 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1284..1342 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1183..1229 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1352..1371 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1505..1542 |
None | No IPR available | CDD | cd00096 | Ig | coord: 335..415 e-value: 2.77842E-7 score: 49.0247 |
None | No IPR available | CDD | cd00096 | Ig | coord: 136..205 e-value: 2.39545E-7 score: 49.0247 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 316..401 score: 11.188 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 30..115 score: 11.751 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 819..910 score: 8.883 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 221..291 score: 9.319 |
IPR007110 | Immunoglobulin-like domain | PROSITE | PS50835 | IG_LIKE | coord: 119..204 score: 11.551 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 217..316 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 118..214 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 830..917 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 41..122 |
IPR007110 | Immunoglobulin-like domain | SUPERFAMILY | 48726 | Immunoglobulin | coord: 328..425 |
Blast
BLAST of TCONS_00072631-protein vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2) HSP 1 Score: 444.891 bits (1143), Expect = 3.434e-129 Identity = 311/1020 (30.49%), Postives = 492/1020 (48.24%), Query Frame = 0
Query: 5 GRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVT-SSQSMKVLSNGTLLIGSFSAN-EEGEFECHA--QNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDG-----ILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYKHSTSLACLATGFPAPQIIWM--KKSPDDFFEPIQLSNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVLNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTMVAIAKDKFLLQWKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTE---YTLTNLYQYTAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAIPQNAVNGVLKGYTVQY----TDIERSEHYQTTVKGLQASLTNLKAFTRYQIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKNGIILNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTSKGEGNFTEHRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKPMITW---SNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKNHVFYIIENQHFDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGSMT 1002
G Y+C N G+ I + G I +++ + G+ +HC V G P ++W + + + + + + +NGTL + +EGE+ C+ Q TS+ V+V PP I P + G RV C G +TITW KDG L ID I+ +TS++ I ++ H+G YTCIARN A + +V F +P+D +Y + L C A G+P P I+W K + F+PI L+ R+Q L+NG+L I D G Y CK D V S++ ++ VK+PA ++ S P +G + C+ G + V+W +I+ ++Y + T E +G + STL I + D+ + C N YG ++ + V+E P P I + D ++ L WT G++GN I+ Y I+ K ++D W AQ T V+ ++++HP + Y +R+ AKNRIG S+ S+ + E AP PPQ V + I+ + WK P K +NGI+ YQI + S+ + I+++ + + YTL NL ++T Y + +QA + G GP S + TTLE VPS P +V+A A S I I+W + + A+NG+L+G+ V Y D E E T L L+ +T Y I+V A+T+ G GV S + T ED PG PA KA A+ + ++W PPL+ NGII Y ++ + + P YRI +L R+Y+ W+ AVTS G GN +E PARI+T + P D+ LPC AVG P P + W SN PS ++ RR + + ++ + + G Y+C A N++GSD ++ L+VQVPP P S ++ ++W+ G NGGS +I+ ++ E+ W + + + + N+ F ++++N +G G ++
Sbjct: 480 GVYRCTANNSAGVVLYQARINVRGPASIRPMKNIT-AIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLS-TSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLP-ITITWQKDGRPIPGSLGVTIDNID------FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSG-TVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVT-IDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSS-----SITLSWLPGDNGGS-SIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS 1463 HSP 2 Score: 92.8189 bits (229), Expect = 1.074e-18 Identity = 97/394 (24.62%), Postives = 167/394 (42.39%), Query Frame = 0
Query: 7 YQCLVENRVGLDSK-------YVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVTSSQSMKVLSNGTLLIGSFSANEEGEFECHAQNSFG--RTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDGILAN-----QIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYK------HSTSLACLATGFPAPQIIWMKKSPDDFFEPIQL--SNRVQQLNNGT------LHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPA--RVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETN 370
Y+C+ +R +++ +V+ P I D ++ + G+ + L C G P+P RW++ + S + G LLI + ++ G + C N +G + ++YVK ISP KV ++ GS+V +C+ ++D ++WY++G + N +I GI + N+ ++ + G Y C R + QD+V + L PK S + SL C G P P I W + DD +PI S+R+ Q+ L+I+ + D G Y C A ++ A I V+ PA R + + IA G D ++ C ++G S+KW+ N L+ + + E N
Sbjct: 195 YRCITRHRYTGETRQSNSARLFVSDPANSAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGRFQKTVTG-LLIENIRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSV-GSQVSLSCSVT--GTEDQELSWYRNGEILNPGKNVRITGINHE-------NLIMDHMVKSDGGAYQCFVRK---DKLSAQDYV--QVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITW---TLDD--DPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLY-------QARINVRGPASIRPMKNITAIA----GRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENN 556
The following BLAST results are available for this feature:
|