TCONS_00072631-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072631-protein
Unique NameTCONS_00072631-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1542

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072631-protein ID=TCONS_00072631-protein|Name=TCONS_00072631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1542bp
MAMSGRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLH
CNVKGSPKPLVRWMRWGSRVTSSQSMKVLSNGTLLIGSFSANEEGEFECH
AQNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDL
TITWYKDGILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRA
GEMSRFQDFVVYEKALFKDEPKDTSVLYKHSTSLACLATGFPAPQIIWMK
KSPDDFFEPIQLSNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVF
IPPKMSRTAHIKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVK
WFMNGALIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYE
CMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNL
DISEYIIQIKRQNDESDLILWTDAQTYSVAVSSVPYRVLNLHPGTQYMVR
VKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTMVAIAKDKFLLQWKHPS
KTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTEYTLTNLYQYTAYKV
QLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAI
PQNAVNGVLKGYTVQYTDIERSEHYQTTVKGLQASLTNLKAFTRYQIRVS
AYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKN
GIILNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTS
KGEGNFTEHRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKP
MITWSNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGS
DWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKN
HVFYIIENQHFDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGS
MTSSMKFIIAHSNNAFESGSVIQMYAAPLVAQKQNKKPSSLQRFLKPILI
SAVAFVTLLMVLLLVASYDREEHRMREPRCSRLICRCSCKQHKEYNPAPY
GEPGLLWPWNIKQNRHSGAFDMKDELLPNDTIEMKYCNGTAFNYNALQQN
GNASGGSLGRPKMQNTNKFNDFEPVVLFTPSKTPDNHSFAAGNPQPKLSN
GNKRGTGSDVGVRVAPPRTQANNNTAERPISSRYASTPSIIEKYFQSQEQ
CGNTALKQNGYGNRFATGDDNVRNSILTEDSIDFTELDGGGVNSQKAAPK
DNIQPLEQLPVSPPEYNELYSNEPETGDPSKPSPPNYRDIISSLSDYSDA
PRALFRKEGEPPRRGKRNRKSLDSLLLKTLEDIEEQQILTNHANVSNTPA
LERHVAIVRDALQKATRSFDSVSSTCSSSVGELRRAFEFGKKYGLQNYGE
IPNYLQESMDDLTLDETNEEFDFAEHEKLLDLMALTNFSEQPRSSNDIAV
KIPLPVRLTDSDEESDPDDLDEYEQDGLNGYVKKENPTLSLV
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045082XLOC_045082Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072631TCONS_00072631Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003961FN3_dom
IPR003598Ig_sub2
IPR003599Ig_sub
IPR013783Ig-like_fold
IPR013098Ig_I-set
IPR007110Ig-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003961Fibronectin type IIISMARTSM00060FN3_2coord: 422..510
e-value: 3.2E-12
score: 56.6
coord: 723..804
e-value: 1.4E-7
score: 41.2
coord: 627..708
e-value: 2.9E-8
score: 43.5
coord: 526..611
e-value: 2.4E-9
score: 47.1
coord: 913..999
e-value: 26.0
score: 7.9
IPR003961Fibronectin type IIIPFAMPF00041fn3coord: 629..711
e-value: 1.1E-10
score: 41.6
coord: 427..513
e-value: 4.3E-11
score: 42.9
coord: 725..806
e-value: 1.5E-10
score: 41.2
coord: 527..614
e-value: 8.4E-14
score: 51.6
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 528..624
score: 22.769
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 725..819
score: 16.253
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 915..1012
score: 10.486
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 421..523
score: 19.377
IPR003961Fibronectin type IIIPROSITEPS50853FN3coord: 629..721
score: 18.493
IPR003961Fibronectin type IIICDDcd00063FN3coord: 527..621
e-value: 1.28424E-14
score: 70.9883
IPR003961Fibronectin type IIICDDcd00063FN3coord: 723..814
e-value: 1.15548E-11
score: 62.1287
IPR003961Fibronectin type IIICDDcd00063FN3coord: 629..718
e-value: 4.78065E-13
score: 66.3659
IPR003961Fibronectin type IIICDDcd00063FN3coord: 422..520
e-value: 2.26891E-14
score: 70.2179
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 420..626
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 904..1008
IPR003961Fibronectin type IIISUPERFAMILY49265Fibronectin type IIIcoord: 626..819
IPR003598Immunoglobulin subtype 2SMARTSM00408igc2_5coord: 42..106
e-value: 1.4E-10
score: 51.2
coord: 330..408
e-value: 0.049
score: 19.7
coord: 833..899
e-value: 5.0E-6
score: 36.0
coord: 227..296
e-value: 0.0054
score: 26.0
coord: 131..201
e-value: 0.038
score: 20.8
IPR003599Immunoglobulin subtypeSMARTSM00409IG_3ccoord: 36..115
e-value: 0.0012
score: 28.2
coord: 827..910
e-value: 6.7E-7
score: 38.9
coord: 324..419
e-value: 2.6E-5
score: 33.7
coord: 125..214
e-value: 0.002
score: 27.4
coord: 221..316
e-value: 3.9
score: 15.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 716..823
e-value: 3.2E-18
score: 65.5
coord: 523..621
e-value: 1.0E-21
score: 76.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 214..314
e-value: 1.0E-12
score: 47.3
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 622..715
e-value: 7.0E-19
score: 67.5
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 424..522
e-value: 1.3E-19
score: 70.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 824..916
e-value: 1.3E-13
score: 50.6
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 32..121
e-value: 4.3E-18
score: 64.9
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 1..31
e-value: 0.01
score: 15.4
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 917..1035
e-value: 9.7E-5
score: 22.0
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 122..213
e-value: 2.3E-13
score: 49.8
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10coord: 315..423
e-value: 2.5E-16
score: 59.1
IPR013098Immunoglobulin I-setPFAMPF07679I-setcoord: 324..414
e-value: 5.2E-9
score: 35.9
coord: 834..909
e-value: 3.5E-9
score: 36.5
coord: 36..114
e-value: 2.9E-13
score: 49.6
NoneNo IPR availablePFAMPF13927Ig_3coord: 119..198
e-value: 2.0E-11
score: 44.2
coord: 221..291
e-value: 2.7E-7
score: 31.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1284..1342
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1183..1229
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1352..1371
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1505..1542
NoneNo IPR availableCDDcd00096Igcoord: 335..415
e-value: 2.77842E-7
score: 49.0247
NoneNo IPR availableCDDcd00096Igcoord: 136..205
e-value: 2.39545E-7
score: 49.0247
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 316..401
score: 11.188
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 30..115
score: 11.751
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 819..910
score: 8.883
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 221..291
score: 9.319
IPR007110Immunoglobulin-like domainPROSITEPS50835IG_LIKEcoord: 119..204
score: 11.551
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 217..316
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 118..214
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 830..917
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 41..122
IPR007110Immunoglobulin-like domainSUPERFAMILY48726Immunoglobulincoord: 328..425

Blast
BLAST of TCONS_00072631-protein vs. Swiss-Prot (Human)
Match: DSCAM (Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2)

HSP 1 Score: 444.891 bits (1143), Expect = 3.434e-129
Identity = 311/1020 (30.49%), Postives = 492/1020 (48.24%), Query Frame = 0
Query:    5 GRYQCLVENRVGLDSKYVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVT-SSQSMKVLSNGTLLIGSFSAN-EEGEFECHA--QNSFGRTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDG-----ILANQIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYKHSTSLACLATGFPAPQIIWM--KKSPDDFFEPIQLSNRVQQLNNGTLHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPARVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETNENIGALHQTSMLNSTLVIKNVLTRDNATYECMGRNLYGSNKKFFHIMVEEKPSKPIIIRQLDSTPDSMLLSWTAGYNGNLDISEYIIQIKRQNDESDLILWTDAQ-TYSVAVSSVPYRVLNLHPGTQYMVRVKAKNRIGFSDYSHVFLFSTKEKAPSSPPQNVTMVAIAKDKFLLQWKHPSKTSRNGILTRYQISFTPTSSLVVVETKIVNIPSVTE---YTLTNLYQYTAYKVQLQAATKVGLGPPSTPVYATTLEGVPSQAPTSVEAHALSAHQIVITWKAIPQNAVNGVLKGYTVQY----TDIERSEHYQTTVKGLQASLTNLKAFTRYQIRVSAYTKIGLGVASTEQHIVTYEDRPGKPADFKAIPANPKEIVLTWRPPLEKNGIILNYNIYFKSEHDEYERKSVVQPHLVKYRIQDLVVMRKYTFWMSAVTSKGEGNFTEHRIARTTTHVPARIITPQNFIIHKPIGSDVSLPCTAVGYPKPMITW---SNRHPSGNNPVNTRRWMAEDKPMLLYRITKDAEGEYNCTAMNSYGSDWNVVKLKVQVPPFPPEEISSSLVHKTDDFYTLNITWVLGPNGGSTTIKNHVFYIIENQHFDWIEDSVQGHQGWFGISNVTYDDVIYFKVSSENAIGIGSMT 1002
            G Y+C   N  G+      I + G   I   +++   + G+   +HC V G P   ++W +  + +  + + +   +NGTL +       +EGE+ C+   Q     TS+ V+V    PP I P +      G RV   C    G    +TITW KDG      L   ID I+      +TS++ I  ++  H+G YTCIARN A  +      +V     F  +P+D   +Y  +  L C A G+P P I+W   K +    F+PI L+ R+Q L+NG+L I      D G Y CK   D    V      S++ ++ VK+PA ++ S P      +G    + C+  G   + V+W     +I+   ++Y + T E +G       + STL I   +  D+  + C   N YG ++    + V+E P  P I  + D    ++ L WT G++GN  I+ Y I+ K ++D      W  AQ T  V+       ++++HP + Y +R+ AKNRIG S+ S+    +  E AP  PPQ V +  I+     + WK P K  +NGI+  YQI +   S+    +  I+++ +  +   YTL NL ++T Y + +QA  + G GP S  +  TTLE VPS  P +V+A A S   I I+W  + + A+NG+L+G+ V Y     D E  E    T       L  L+ +T Y I+V A+T+ G GV S +    T ED PG PA  KA  A+   + ++W PPL+ NGII  Y ++    +     +    P    YRI +L   R+Y+ W+ AVTS G GN +E          PARI+T     +  P   D+ LPC AVG P P + W   SN  PS    ++ RR +  +   ++  +  +  G Y+C A N++GSD  ++ L+VQVPP  P    S          ++ ++W+ G NGGS +I+ ++    E+    W    +   +  + + N+       F ++++N +G G ++
Sbjct:  480 GVYRCTANNSAGVVLYQARINVRGPASIRPMKNIT-AIAGRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLVQPQLS-TSQSVHVTVKVPPFIQPFEFPRFSIGQRVFIPCVVVSGDLP-ITITWQKDGRPIPGSLGVTIDNID------FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQLIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSNGSLLIKHVVEEDSGYYLCKVSNDVGADV------SKSMYLTVKIPA-MITSYPNTTLATQGQKKEMSCTAHGEKPIIVRWEKEDRIINPEMARYLVSTKE-VG-----EEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLTVQEPPDPPEIEIK-DVKARTITLRWTMGFDGNSPITGYDIECKNKSDS-----WDSAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNELTITADEAAPDGPPQEVHLEPISSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISVDTSGDSEVYTLDNLNKFTQYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQGFRVIYWANLMDGELGEIKNITTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTKEDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVISEFEASPDSFSYRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSG-TVTTPWMKDIVLPCKAVGDPSPAVKWMKDSNGTPSLVT-IDGRRSIFSNGSFIIRTVKAEDSGYYSCIANNNWGSDEIILNLQVQVPPDQPRLTVSKTTSS-----SITLSWLPGDNGGS-SIRGYILQYSEDNSEQWGSFPISPSERSYRLENLKCGTWYKFTLTAQNGVGPGRIS 1463          

HSP 2 Score: 92.8189 bits (229), Expect = 1.074e-18
Identity = 97/394 (24.62%), Postives = 167/394 (42.39%), Query Frame = 0
Query:    7 YQCLVENRVGLDSK-------YVNIEIEGKPVITDFESMKEGLVGKPLSLHCNVKGSPKPLVRWMRWGSRVTSSQSMKVLSNGTLLIGSFSANEEGEFECHAQNSFG--RTSKKVYVKSIEPPVISPVKVDPAIAGSRVLFTCTCNRGSSDDLTITWYKDGILAN-----QIDGIEKQIGNRYTSNIFIEKVNAKHHGRYTCIARNRAGEMSRFQDFVVYEKALFKDEPKDTSVLYK------HSTSLACLATGFPAPQIIWMKKSPDDFFEPIQL--SNRVQQLNNGT------LHITMTTGLDDGEYACKAFFDTKQPVFIPPKMSRTAHIKVKVPA--RVVHSSPTIARMEKGGDVHLICSIVGTTQLSVKWFMNGALIDNRNSKYQIETN 370
            Y+C+  +R   +++       +V+      P I D    ++ + G+ + L C   G P+P  RW++    +  S   +    G LLI +   ++ G + C   N +G  +   ++YVK      ISP KV  ++ GS+V  +C+     ++D  ++WY++G + N     +I GI  +       N+ ++ +     G Y C  R    +    QD+V  +  L    PK  S   +         SL C   G P P I W   + DD  +PI    S+R+ Q+          L+I+ +   D G Y C A       ++        A I V+ PA  R + +   IA    G D ++ C ++G    S+KW+ N  L+   + +   E N
Sbjct:  195 YRCITRHRYTGETRQSNSARLFVSDPANSAPSILDGFDHRKAMAGQRVELPCKALGHPEPDYRWLKDNMPLELSGRFQKTVTG-LLIENIRPSDSGSYVCEVSNRYGTAKVIGRLYVKQPLKATISPRKVKSSV-GSQVSLSCSVT--GTEDQELSWYRNGEILNPGKNVRITGINHE-------NLIMDHMVKSDGGAYQCFVRK---DKLSAQDYV--QVVLEDGTPKIISAFSEKVVSPAEPVSLMCNVKGTPLPTITW---TLDD--DPILKGGSHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAGVVLY-------QARINVRGPASIRPMKNITAIA----GRDTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENN 556          
The following BLAST results are available for this feature:
BLAST of TCONS_00072631-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DSCAM3.434e-12930.49Down syndrome cell adhesion molecule OS=Homo sapie... [more]
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