|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=transcript|length=1597bp
tgtgttcaacaacactctactcggcgggtgcgacgccgggtgacggctag
ttgTCTATCGATTCGGTGTTTTTATTATTCAACTTCTACAAGAGATCATG
GAAGTGCCTGAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAA
TTACGCTAAGAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTA
AGATCTTGTTTATCCGCCAAGAGCGTATGGACAGTGTTGgtgattttgtt
gttttgatcaTGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGA
TGATAACAATGTTCTCTTCTTGAGAGAATTTTACAAGACTATGCGTGTAT
GTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCATCAGGCCAC
CAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCATGCTCGGTAC
ACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCACAGAAATTGA
ACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCGATTGAACAA
GACTTCTCGAATGAGggtGTTACTGAACGTATCTCGAAACACAATGTATT
TGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGGTGCAATCG
AAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGAAAGAACTA
ACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCattGAGACGATC
GATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAACTTTTAGATTCTC
AAATACAAGAAACAAACAATAAGATCGATCAACTAAATATGGAGTTAACG
GTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACATTAAAAATCTTGA
ATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGCGCAAGAAATGGG
AAGAGAATAACTCACGTAAATTGAACttgatgaaaaagataaaaCAGTTA
GAAACGGAGTTAAATcgaaaagagaaagagaaaaatacaGCGGCTGCTac
gtaaaaaaataattcaagatTTGTTGGCAAGAGTTTGAGTGGGAAAATTT
TGctccaaaccaaataaaaactaaaaaagacGAGACTAAATGAAAAATGC
TGGCATTTTCATGGCATGGAGAAGCAGAAATAGAATAAAATGTTATACGT
TTTACTTtacatttaaaagatttttgtattttaataacacatttttgtta
atttaatcAAGTTCGACTATGTAATTAGTgtgattttttgtaaaaaattt
tgcACTGGGAAAATAATGatgtaatttattttttgatgatttttttattg
ttttttgttaaTCACTTGGGGTAGTTTTTTTATGAACGAcacaaaacttt
agaaatatttaatttttattttaatgaacttgccaaaaatattttctttt
ttaataatatttctGGTCTTAAAGTTCTAATGCCCTAAAAGTAATATTGG
AAAATAACATAttgtaaatttaaagaaaaatttaacgATCATTTTTAATG
TGTAATTAGACTTAAccatattggaaagatattatttAATACTTATG Run BLAST on NCBI protein sequence of TCONS_00072630-protein >TCONS_00072630-protein ID=TCONS_00072630-protein|Name=TCONS_00072630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MEVPEVTLLIASSLPPNNYAKNAFRNSFFYERSRKILFIRQERMDSVGDF
VVLIMHCLAHIKVDDLKDDNNVLFLREFYKTMRVCCQDMFFSRSRSTPSG
HQLLNIPASRDQSRMLGTPLEHMFKKAQKQSQKLNAVKELLDVKIKDPIE
QDFSNEGVTERISKHNVFVDNAKLRAYLRSVGAIETSEQADSHAEKRLKE
LTGKSRPSDKGRKSLRRSMSSRTALLSPQQLLDSQIQETNNKIDQLNMEL
TVVLKSASDISKNIKNLESSGASVELLDRRRKKWEENNSRKLNLMKKIKQ
LETELNRKEKEKNTAAAT Run BLAST on NCBI transcript from alignment at scaffold_80:144313..146918- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=transcript|length=2606bp|location=Sequence derived from alignment at scaffold_80:144313..146918- (Clytia hemisphaerica)
TGTGTTCAACAACACTCTACTCGGCGGGTGCGACGCCGGGTGACGGCTAG
TTGTCTATCGATTCGGTGTTTTTATTATTCAACTTCTACAAGAGATCATG
GAAGTGCCTGAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAA
TTACGCTAAGAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTA
AGATCTTGTTTATCCGCCAAGAGCGTATGGACAGTGTTGGTGATTTTGTT
GTTTTGATCATGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGA
TGATAACAATGTTCTCTTCTTGAGAGAATTTTACAAGGTAAGATTTGTAA
TCAAGCGTCTTAAGACAAACAACACTCTTCTCTTACTTATTTCAGTCAAT
TTTTGTGATGGTTTAAAATAAAACTACTACTTCAACCATCAGTTTATCAG
TCAAACTTTTTTTGGCTTTTAGTAGTCTTTGAAGTCCACCATATTATACC
GGGCCACTTATCAGCGCCATCCAGTCTATAAAAACAATAAGTGGCCTCCT
GTAATCTGCAATGAATCTCTGTAATAATTTATCATTTTCCGATCCGTTTT
TTCCTTTTAGACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGT
CACGCTCCACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGT
GATCAATCGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGC
ACAAAAACAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCA
AAATTAAAGACCCGATTGAACAAGACTTCTCGAATGAGGTAAGAAAACTT
TTATTTAGTTTCTTGAAAACTTTGAAGTTTTCTGCGACTTTAAACATTGA
TTCTAATTTTCAAATTTGTTCATCTGAGTAGAGGTGAAGTAGTGGCATTG
AAATATTTGGCCAACTCATAATCAGTTTTGGGGAAAATTTAGTTCCGGGT
TTTGAAAAAGACGTGTGATTCTTGAGTCTTTTTAACCCCTAATTTTTTGT
GGCAAGGAGCAGGTTTTATTTCGGGATACTGTTATTTTACTGAATTACAT
TAGAATGGTGAATGCTTTTGTTGCTAAACCTTCCTAACTAATATTTCCAC
AAAAATTCATGCCTTAAAAATTCATTATATTGCTCTGAAGCTAAATTTTT
ATCTTTTTTATCATTTTCATTTTTTCAGGGTGTTACTGAACGTATCTCGA
AACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCA
GTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACG
TTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAAT
CGTAAGATCTGTTCTGTTTTTTTGTCGTTGTCATTCTTGCTAAGATAATT
TCGTTAGAACATTAAAGTTGTGTACTTATGCTTTCCTCAGAAATTCCAAA
CTTTTAGTCCAGGCTATGGGTCTCATTTTGAGAGCTTGAGATGGTAAAAG
TGAGCGGCGAGATTTAATTTTGCTTGTGATGTTACGACAGAGGATTTCAA
TAGATACTGTAGACTGTCACTCATTCGAACTTTCATTATTCAAATCTTTC
TATAACTCGAACTTATTCCCAGTCCCCGTTAAAGAGACTGATGATATTGC
CTTCTTCTTCTACCACCCTTATTAATTTCGTCTTTCTTCTTTCTTAGATT
GAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAACTTT
TAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCAACTAAATATG
GAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACATTAA
AAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGCGCA
AGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGATGAAAAAGATA
AAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGAAAAATACAGC
GGCTGCTACGTAAAAAAATAATTCAAGATTTGTTGGCAAGAGTTTGAGTG
GGAAAATTTTGCTCCAAACCAAATAAAAACTAAAAAAGACGAGACTAAAT
GAAAAATGCTGGCATTTTCATGGCATGGAGAAGCAGAAATAGAATAAAAT
GTTATACGTTTTACTTTACATTTAAAAGATTTTTGTATTTTAATAACACA
TTTTTGTTAATTTAATCAAGTTCGACTATGTAATTAGTGTGATTTTTTGT
AAAAAATTTTGCACTGGGAAAATAATGATGTAATTTATTTTTTGATGATT
TTTTTATTGTTTTTTGTTAATCACTTGGGGTAGTTTTTTTATGAACGACA
CAAAACTTTAGAAATATTTAATTTTTATTTTAATGAACTTGCCAAAAATA
TTTTCTTTTTTAATAATATTTCTGGTCTTAAAGTTCTAATGCCCTAAAAG
TAATATTGGAAAATAACATATTGTAAATTTAAAGAAAAATTTAACGATCA
TTTTTAATGTGTAATTAGACTTAACCATATTGGAAAGATATTATTTAATA
CTTATG Coding sequence (CDS) from alignment at scaffold_80:144313..146918- >TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=CDS|length=3828bp|location=Sequence derived from alignment at scaffold_80:144313..146918- (Clytia hemisphaerica)
ATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAAC
TTTTAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCAACTAAAT
ATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACAT
TAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGC
GCAAGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGATGAAAAAG
ATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGAAAAATAC
AGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTCGAAACACAATGTAT
TTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGGTGCAATC
GAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGAAAGAACT
AACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCACTATGCGTGT
ATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCATCAGGCC
ACCAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCATGCTCGGT
ACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCACAGAAATT
GAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCGATTGAAC
AAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCACCCTTCTTATTGCT
TCCTCCCTACCGCCCAATAATTACGCTAAGAACGCCTTCAGGAATTCATT
CTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCGCCAAGAGCGTATGG
ACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATTGTTTGGCGCACATC
AAAGTTGACGATCTCAAAGATGATAACAATGTTCTCTTCTTGAGAGAATT
TTACAAGATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCG
CAACAACTTTTAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCA
ACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAA
AGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGAT
AGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGAT
GAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGA
AAAATACAGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTCGAAACAC
AATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGG
TGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGA
AAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCACTA
TGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCA
TCAGGCCACCAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCAT
GCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCAC
AGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCG
ATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCACCCTTCT
TATTGCTTCCTCCCTACCGCCCAATAATTACGCTAAGAACGCCTTCAGGA
ATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCGCCAAGAG
CGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATTGTTTGGC
GCACATCAAAGTTGACGATCTCAAAGATGATAACAATGTTCTCTTCTTGA
GAGAATTTTACAAGATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCT
GAGTCCGCAACAACTTTTAGATTCTCAAATACAAGAAACAAACAATAAGA
TCGATCAACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGAC
ATTTCAAAGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATT
ATTAGATAGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGTAAATTGA
ACTTGATGAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAG
AAAGAGAAAAATACAGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTC
GAAACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGAT
CAGTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAA
CGTTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAA
ATCACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTC
CACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGTGATCAAT
CGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAA
CAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAA
AGACCCGATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCA
CCCTTCTTATTGCTTCCTCCCTACCGCCCAATAATTACGCTAAGAACGCC
TTCAGGAATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCG
CCAAGAGCGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATT
GTTTGGCGCACATCAAAGTTGACGATCTCAAAGATGATAACAATGTTCTC
TTCTTGAGAGAATTTTACAAGATTGAGACGATCGATGTCTTCAAGAACAG
CTCTTCTGAGTCCGCAACAACTTTTAGATTCTCAAATACAAGAAACAAAC
AATAAGATCGATCAACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGC
ATCAGACATTTCAAAGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGG
TCGAATTATTAGATAGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGT
AAATTGAACTTGATGAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCG
AAAAGAGAAAGAGAAAAATACAGCGGCTGCTACGTAAGGTGTTACTGAAC
GTATCTCGAAACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTAT
TTACGATCAGTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGC
TGAAAAACGTTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAG
GCAGAAAATCACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGT
CACGCTCCACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGT
GATCAATCGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGC
ACAAAAACAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCA
AAATTAAAGACCCGATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCT
GAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAATTACGCTAA
GAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGT
TTATCCGCCAAGAGCGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATC
ATGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGATGATAACAA
TGTTCTCTTCTTGAGAGAATTTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072630-exon-scaffold_80-1575043694:146582..146918 | TCONS_00072630-exon-scaffold_80-1575043694:146582..146918 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1575043694:146081..146308 | TCONS_00072630-exon-scaffold_80-1575043694:146081..146308 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1575043694:145518..145690 | TCONS_00072630-exon-scaffold_80-1575043694:145518..145690 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1575043694:144313..145171 | TCONS_00072630-exon-scaffold_80-1575043694:144313..145171 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1510915933:146582..146918 | TCONS_00072630-exon-scaffold_80-1510915933:146582..146918 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1510915933:146081..146308 | TCONS_00072630-exon-scaffold_80-1510915933:146081..146308 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1510915933:145518..145690 | TCONS_00072630-exon-scaffold_80-1510915933:145518..145690 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1510915933:144313..145171 | TCONS_00072630-exon-scaffold_80-1510915933:144313..145171 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1491911889:146582..146918 | TCONS_00072630-exon-scaffold_80-1491911889:146582..146918 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1491911889:146081..146308 | TCONS_00072630-exon-scaffold_80-1491911889:146081..146308 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1491911889:145518..145690 | TCONS_00072630-exon-scaffold_80-1491911889:145518..145690 | Clytia hemisphaerica | exon |
| TCONS_00072630-exon-scaffold_80-1491911889:144313..145171 | TCONS_00072630-exon-scaffold_80-1491911889:144313..145171 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_80 | supercontig | scaffold_80:144313..146918 - |
Blast
The following BLAST results are available for this feature:
|
