TCONS_00072630 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072630
Unique NameTCONS_00072630
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1597

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=transcript|length=1597bp
tgtgttcaacaacactctactcggcgggtgcgacgccgggtgacggctag
ttgTCTATCGATTCGGTGTTTTTATTATTCAACTTCTACAAGAGATCATG
GAAGTGCCTGAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAA
TTACGCTAAGAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTA
AGATCTTGTTTATCCGCCAAGAGCGTATGGACAGTGTTGgtgattttgtt
gttttgatcaTGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGA
TGATAACAATGTTCTCTTCTTGAGAGAATTTTACAAGACTATGCGTGTAT
GTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCATCAGGCCAC
CAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCATGCTCGGTAC
ACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCACAGAAATTGA
ACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCGATTGAACAA
GACTTCTCGAATGAGggtGTTACTGAACGTATCTCGAAACACAATGTATT
TGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGGTGCAATCG
AAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGAAAGAACTA
ACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCattGAGACGATC
GATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAACTTTTAGATTCTC
AAATACAAGAAACAAACAATAAGATCGATCAACTAAATATGGAGTTAACG
GTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACATTAAAAATCTTGA
ATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGCGCAAGAAATGGG
AAGAGAATAACTCACGTAAATTGAACttgatgaaaaagataaaaCAGTTA
GAAACGGAGTTAAATcgaaaagagaaagagaaaaatacaGCGGCTGCTac
gtaaaaaaataattcaagatTTGTTGGCAAGAGTTTGAGTGGGAAAATTT
TGctccaaaccaaataaaaactaaaaaagacGAGACTAAATGAAAAATGC
TGGCATTTTCATGGCATGGAGAAGCAGAAATAGAATAAAATGTTATACGT
TTTACTTtacatttaaaagatttttgtattttaataacacatttttgtta
atttaatcAAGTTCGACTATGTAATTAGTgtgattttttgtaaaaaattt
tgcACTGGGAAAATAATGatgtaatttattttttgatgatttttttattg
ttttttgttaaTCACTTGGGGTAGTTTTTTTATGAACGAcacaaaacttt
agaaatatttaatttttattttaatgaacttgccaaaaatattttctttt
ttaataatatttctGGTCTTAAAGTTCTAATGCCCTAAAAGTAATATTGG
AAAATAACATAttgtaaatttaaagaaaaatttaacgATCATTTTTAATG
TGTAATTAGACTTAAccatattggaaagatattatttAATACTTATG
Run BLAST on NCBI

protein sequence of TCONS_00072630-protein

>TCONS_00072630-protein ID=TCONS_00072630-protein|Name=TCONS_00072630-protein|organism=Clytia hemisphaerica|type=polypeptide|length=318bp
MEVPEVTLLIASSLPPNNYAKNAFRNSFFYERSRKILFIRQERMDSVGDF
VVLIMHCLAHIKVDDLKDDNNVLFLREFYKTMRVCCQDMFFSRSRSTPSG
HQLLNIPASRDQSRMLGTPLEHMFKKAQKQSQKLNAVKELLDVKIKDPIE
QDFSNEGVTERISKHNVFVDNAKLRAYLRSVGAIETSEQADSHAEKRLKE
LTGKSRPSDKGRKSLRRSMSSRTALLSPQQLLDSQIQETNNKIDQLNMEL
TVVLKSASDISKNIKNLESSGASVELLDRRRKKWEENNSRKLNLMKKIKQ
LETELNRKEKEKNTAAAT
Run BLAST on NCBI

transcript from alignment at scaffold_80:144313..146918-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=transcript|length=2606bp|location=Sequence derived from alignment at scaffold_80:144313..146918- (Clytia hemisphaerica)
TGTGTTCAACAACACTCTACTCGGCGGGTGCGACGCCGGGTGACGGCTAG TTGTCTATCGATTCGGTGTTTTTATTATTCAACTTCTACAAGAGATCATG GAAGTGCCTGAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAA TTACGCTAAGAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTA AGATCTTGTTTATCCGCCAAGAGCGTATGGACAGTGTTGGTGATTTTGTT GTTTTGATCATGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGA TGATAACAATGTTCTCTTCTTGAGAGAATTTTACAAGGTAAGATTTGTAA TCAAGCGTCTTAAGACAAACAACACTCTTCTCTTACTTATTTCAGTCAAT TTTTGTGATGGTTTAAAATAAAACTACTACTTCAACCATCAGTTTATCAG TCAAACTTTTTTTGGCTTTTAGTAGTCTTTGAAGTCCACCATATTATACC GGGCCACTTATCAGCGCCATCCAGTCTATAAAAACAATAAGTGGCCTCCT GTAATCTGCAATGAATCTCTGTAATAATTTATCATTTTCCGATCCGTTTT TTCCTTTTAGACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGT CACGCTCCACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGT GATCAATCGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGC ACAAAAACAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCA AAATTAAAGACCCGATTGAACAAGACTTCTCGAATGAGGTAAGAAAACTT TTATTTAGTTTCTTGAAAACTTTGAAGTTTTCTGCGACTTTAAACATTGA TTCTAATTTTCAAATTTGTTCATCTGAGTAGAGGTGAAGTAGTGGCATTG AAATATTTGGCCAACTCATAATCAGTTTTGGGGAAAATTTAGTTCCGGGT TTTGAAAAAGACGTGTGATTCTTGAGTCTTTTTAACCCCTAATTTTTTGT GGCAAGGAGCAGGTTTTATTTCGGGATACTGTTATTTTACTGAATTACAT TAGAATGGTGAATGCTTTTGTTGCTAAACCTTCCTAACTAATATTTCCAC AAAAATTCATGCCTTAAAAATTCATTATATTGCTCTGAAGCTAAATTTTT ATCTTTTTTATCATTTTCATTTTTTCAGGGTGTTACTGAACGTATCTCGA AACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCA GTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACG TTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAAT CGTAAGATCTGTTCTGTTTTTTTGTCGTTGTCATTCTTGCTAAGATAATT TCGTTAGAACATTAAAGTTGTGTACTTATGCTTTCCTCAGAAATTCCAAA CTTTTAGTCCAGGCTATGGGTCTCATTTTGAGAGCTTGAGATGGTAAAAG TGAGCGGCGAGATTTAATTTTGCTTGTGATGTTACGACAGAGGATTTCAA TAGATACTGTAGACTGTCACTCATTCGAACTTTCATTATTCAAATCTTTC TATAACTCGAACTTATTCCCAGTCCCCGTTAAAGAGACTGATGATATTGC CTTCTTCTTCTACCACCCTTATTAATTTCGTCTTTCTTCTTTCTTAGATT GAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAACTTT TAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCAACTAAATATG GAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACATTAA AAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGCGCA AGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGATGAAAAAGATA AAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGAAAAATACAGC GGCTGCTACGTAAAAAAATAATTCAAGATTTGTTGGCAAGAGTTTGAGTG GGAAAATTTTGCTCCAAACCAAATAAAAACTAAAAAAGACGAGACTAAAT GAAAAATGCTGGCATTTTCATGGCATGGAGAAGCAGAAATAGAATAAAAT GTTATACGTTTTACTTTACATTTAAAAGATTTTTGTATTTTAATAACACA TTTTTGTTAATTTAATCAAGTTCGACTATGTAATTAGTGTGATTTTTTGT AAAAAATTTTGCACTGGGAAAATAATGATGTAATTTATTTTTTGATGATT TTTTTATTGTTTTTTGTTAATCACTTGGGGTAGTTTTTTTATGAACGACA CAAAACTTTAGAAATATTTAATTTTTATTTTAATGAACTTGCCAAAAATA TTTTCTTTTTTAATAATATTTCTGGTCTTAAAGTTCTAATGCCCTAAAAG TAATATTGGAAAATAACATATTGTAAATTTAAAGAAAAATTTAACGATCA TTTTTAATGTGTAATTAGACTTAACCATATTGGAAAGATATTATTTAATA CTTATG

Coding sequence (CDS) from alignment at scaffold_80:144313..146918-

>TCONS_00072630 ID=TCONS_00072630|Name=TCONS_00072630|organism=Clytia hemisphaerica|type=CDS|length=3828bp|location=Sequence derived from alignment at scaffold_80:144313..146918- (Clytia hemisphaerica)
ATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCGCAACAAC
TTTTAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCAACTAAAT
ATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAAAGAACAT
TAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGATAGGCGGC
GCAAGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGATGAAAAAG
ATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGAAAAATAC
AGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTCGAAACACAATGTAT
TTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGGTGCAATC
GAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGAAAGAACT
AACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCACTATGCGTGT
ATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCATCAGGCC
ACCAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCATGCTCGGT
ACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCACAGAAATT
GAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCGATTGAAC
AAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCACCCTTCTTATTGCT
TCCTCCCTACCGCCCAATAATTACGCTAAGAACGCCTTCAGGAATTCATT
CTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCGCCAAGAGCGTATGG
ACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATTGTTTGGCGCACATC
AAAGTTGACGATCTCAAAGATGATAACAATGTTCTCTTCTTGAGAGAATT
TTACAAGATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCTGAGTCCG
CAACAACTTTTAGATTCTCAAATACAAGAAACAAACAATAAGATCGATCA
ACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGACATTTCAA
AGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATTATTAGAT
AGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGTAAATTGAACTTGAT
GAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAGAAAGAGA
AAAATACAGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTCGAAACAC
AATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGATCAGTGGG
TGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAACGTTTGA
AAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAAATCACTA
TGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTCCACGCCA
TCAGGCCACCAATTACTGAACATTCCTGCGTCACGTGATCAATCGCGCAT
GCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAACAATCAC
AGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAAAGACCCG
ATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCACCCTTCT
TATTGCTTCCTCCCTACCGCCCAATAATTACGCTAAGAACGCCTTCAGGA
ATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCGCCAAGAG
CGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATTGTTTGGC
GCACATCAAAGTTGACGATCTCAAAGATGATAACAATGTTCTCTTCTTGA
GAGAATTTTACAAGATTGAGACGATCGATGTCTTCAAGAACAGCTCTTCT
GAGTCCGCAACAACTTTTAGATTCTCAAATACAAGAAACAAACAATAAGA
TCGATCAACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGCATCAGAC
ATTTCAAAGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGGTCGAATT
ATTAGATAGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGTAAATTGA
ACTTGATGAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCGAAAAGAG
AAAGAGAAAAATACAGCGGCTGCTACGTAAGGTGTTACTGAACGTATCTC
GAAACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTATTTACGAT
CAGTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGCTGAAAAA
CGTTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAGGCAGAAA
ATCACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGTCACGCTC
CACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGTGATCAAT
CGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGCACAAAAA
CAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCAAAATTAA
AGACCCGATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCTGAAGTCA
CCCTTCTTATTGCTTCCTCCCTACCGCCCAATAATTACGCTAAGAACGCC
TTCAGGAATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGTTTATCCG
CCAAGAGCGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATCATGCATT
GTTTGGCGCACATCAAAGTTGACGATCTCAAAGATGATAACAATGTTCTC
TTCTTGAGAGAATTTTACAAGATTGAGACGATCGATGTCTTCAAGAACAG
CTCTTCTGAGTCCGCAACAACTTTTAGATTCTCAAATACAAGAAACAAAC
AATAAGATCGATCAACTAAATATGGAGTTAACGGTCGTTCTAAAATCCGC
ATCAGACATTTCAAAGAACATTAAAAATCTTGAATCAAGCGGCGCCTCGG
TCGAATTATTAGATAGGCGGCGCAAGAAATGGGAAGAGAATAACTCACGT
AAATTGAACTTGATGAAAAAGATAAAACAGTTAGAAACGGAGTTAAATCG
AAAAGAGAAAGAGAAAAATACAGCGGCTGCTACGTAAGGTGTTACTGAAC
GTATCTCGAAACACAATGTATTTGTTGATAACGCTAAATTGCGAGCTTAT
TTACGATCAGTGGGTGCAATCGAAACTTCTGAACAGGCTGATTCTCATGC
TGAAAAACGTTTGAAAGAACTAACTGGAAAATCAAGACCGTCCGACAAAG
GCAGAAAATCACTATGCGTGTATGTTGTCAAGACATGTTCTTCTCACGGT
CACGCTCCACGCCATCAGGCCACCAATTACTGAACATTCCTGCGTCACGT
GATCAATCGCGCATGCTCGGTACACCGTTGGAGCACATGTTTAAGAAAGC
ACAAAAACAATCACAGAAATTGAACGCGGTCAAGGAGCTTTTAGACGTCA
AAATTAAAGACCCGATTGAACAAGACTTCTCGAATGAGATGGAAGTGCCT
GAAGTCACCCTTCTTATTGCTTCCTCCCTACCGCCCAATAATTACGCTAA
GAACGCCTTCAGGAATTCATTCTTTTACGAGCGGTCGCGTAAGATCTTGT
TTATCCGCCAAGAGCGTATGGACAGTGTTGGTGATTTTGTTGTTTTGATC
ATGCATTGTTTGGCGCACATCAAAGTTGACGATCTCAAAGATGATAACAA
TGTTCTCTTCTTGAGAGAATTTTACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045081XLOC_045081Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072630-exon-scaffold_80-1575043694:146582..146918TCONS_00072630-exon-scaffold_80-1575043694:146582..146918Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1575043694:146081..146308TCONS_00072630-exon-scaffold_80-1575043694:146081..146308Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1575043694:145518..145690TCONS_00072630-exon-scaffold_80-1575043694:145518..145690Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1575043694:144313..145171TCONS_00072630-exon-scaffold_80-1575043694:144313..145171Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1510915933:146582..146918TCONS_00072630-exon-scaffold_80-1510915933:146582..146918Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1510915933:146081..146308TCONS_00072630-exon-scaffold_80-1510915933:146081..146308Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1510915933:145518..145690TCONS_00072630-exon-scaffold_80-1510915933:145518..145690Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1510915933:144313..145171TCONS_00072630-exon-scaffold_80-1510915933:144313..145171Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1491911889:146582..146918TCONS_00072630-exon-scaffold_80-1491911889:146582..146918Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1491911889:146081..146308TCONS_00072630-exon-scaffold_80-1491911889:146081..146308Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1491911889:145518..145690TCONS_00072630-exon-scaffold_80-1491911889:145518..145690Clytia hemisphaericaexon
TCONS_00072630-exon-scaffold_80-1491911889:144313..145171TCONS_00072630-exon-scaffold_80-1491911889:144313..145171Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072630-proteinTCONS_00072630-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_80supercontigscaffold_80:144313..146918 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.794 9.76227 26.6485 29.2406 112.715 72.6361 22.1678 27.7989 25.9701 23.6334 23.4618 30.9248 10.8393 11.5234 2.54019 3.33555 3.47403 4.15256 27.0048 27.9956 11.1076 8.55545 7.99397 9.91047 13.2824 13.655 18.149 24.1626 13.3136 11.6774
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072630 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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