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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072622 ID=TCONS_00072622|Name=TCONS_00072622|organism=Clytia hemisphaerica|type=transcript|length=2684bpRun BLAST on NCBI protein sequence of TCONS_00072622-protein >TCONS_00072622-protein ID=TCONS_00072622-protein|Name=TCONS_00072622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp MANPGTAVASSVWNAQEKQPGNVQLLKQEPGQQVILHQNISGFTTKLGTTRun BLAST on NCBI transcript from alignment at scaffold_80:96289..130280+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072622 ID=TCONS_00072622|Name=TCONS_00072622|organism=Clytia hemisphaerica|type=transcript|length=33992bp|location=Sequence derived from alignment at scaffold_80:96289..130280+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_80:96289..130280+ >TCONS_00072622 ID=TCONS_00072622|Name=TCONS_00072622|organism=Clytia hemisphaerica|type=CDS|length=23850bp|location=Sequence derived from alignment at scaffold_80:96289..130280+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072622 vs. Swiss-Prot (Human)
Match: TFDP2 (Transcription factor Dp-2 OS=Homo sapiens GN=TFDP2 PE=1 SV=2) HSP 1 Score: 331.257 bits (848), Expect = 3.649e-103 Identity = 208/369 (56.37%), Postives = 256/369 (69.38%), Query Frame = 2
Query: 491 VGTSSNQGVVTAFISSR--PTSGITATTNGTQMTKPVIVTPSQPLLLPKP----SVQ---KVIPSTPPKVG----------YAPHPTVLTSPALGSPANQHWQAASPLHNRKRARPEYDLEQLDSKRRKTPNRCGPEKSGKGLRHFSMKVCEKVQQKGITSYNEVADELVQEFSEQNIKNPIQPADQSYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWVGLPTNSAQECKHLEEQKGXXXXXXXXXXXXXXXXXXXXXAFKNLVERNKRNEKKN-GPPQSNACIHLPFIIVNTSKKTVIDCSISSDKSEYLFNFDEAFEIHDDIEVLKRMGLSFGLEKGVCTDKNLKSARTMVPKALEPYVSQMANG 1537
VG +S V FI PT G N + + PV T S +LPK +V ++I STP ++ Y P P ++T + W +RKRAR D + +SKR K +K+GKGLRHFSMKVCEKVQ+KG TSYNEVADELV EF+ N N + AD +YDQKNIRRRVYDALNVLMAMNIISKEKKEIKW+GLPTNSAQEC++LE +K RIERI+QK+ QL+ELL+QQIAFKNLV+RN++NE++N GPP N+ I LPFII+NTS+KTVIDCSISSDK EYLFNFD FEIHDDIEVLKRMG+SFGLE G C+ ++LK A+++VPKALE Y++ ++ G
Sbjct: 6 VGLTSTNAEVRGFIDQNLSPTKG-----NISFVAFPVSNTNSPTKILPKTLGPINVNVGPQMIISTPQRLTSSGSVLIGSPYTPAPAMVTQTHIAEATG--WVPG----DRKRARKFIDSDFSESKRSKKG-----DKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVSEFTNSN--NHL-AADSAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEIEKQRRIERIKQKRAQLQELLLQQIAFKNLVQRNRQNEQQNQGPPALNSTIQLPFIIINTSRKTVIDCSISSDKFEYLFNFDNTFEIHDDIEVLKRMGMSFGLESGKCSLEDLKLAKSLVPKALEGYITDISTG 355 The following BLAST results are available for this feature:
BLAST of TCONS_00072622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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