TCONS_00072622-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00072622-protein
Unique NameTCONS_00072622-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00072622-protein ID=TCONS_00072622-protein|Name=TCONS_00072622-protein|organism=Clytia hemisphaerica|type=polypeptide|length=529bp
MANPGTAVASSVWNAQEKQPGNVQLLKQEPGQQVILHQNISGFTTKLGTT
QPRAGGLVQKVNATASSTQISNLSNMTSLVTNLTNLVGTVGTSSNQGVVT
AFISSRPTSGITATTNGTQMTKPVIVTPSQPLLLPKPSVQKVIPSTPPKV
GYAPHPTVLTSPALGSPANQHWQAASPLHNRKRARPEYDLEQLDSKRRKT
PNRCGPEKSGKGLRHFSMKVCEKVQQKGITSYNEVADELVQEFSEQNIKN
PIQPADQSYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWVGLPTNSAQE
CKHLEEQKGERIERIRQKQQQLKELLVQQIAFKNLVERNKRNEKKNGPPQ
SNACIHLPFIIVNTSKKTVIDCSISSDKSEYLFNFDEAFEIHDDIEVLKR
MGLSFGLEKGVCTDKNLKSARTMVPKALEPYVSQMANGTYGNMDLIDVEK
LRRPISPLTTPLMIGAGHSSSSTTTSIRQTKPNARRKKSVATTVGGNSRV
TTTKVTFNTRTLESDTENDGDDENSTVGI
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_045076XLOC_045076Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00072622TCONS_00072622Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003316E2F_WHTH_DNA-bd_dom
IPR014889Transc_factor_DP_C
IPR011991WHTH_DNA-bd_dom
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005667transcription factor complex
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005667 transcription factor complex
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003316E2F/DP family, winged-helix DNA-binding domainSMARTSM01372E2F_TDP_2coord: 208..292
e-value: 1.4E-37
score: 140.8
IPR003316E2F/DP family, winged-helix DNA-binding domainPFAMPF02319E2F_TDPcoord: 210..292
e-value: 2.8E-26
score: 91.2
IPR014889Transcription factor DP, C-terminalSMARTSM01138DP_2coord: 299..442
e-value: 9.4E-86
score: 300.9
IPR014889Transcription factor DP, C-terminalPFAMPF08781DPcoord: 299..436
e-value: 3.3E-61
score: 205.1
IPR014889Transcription factor DP, C-terminalCDDcd14458DP_DDcoord: 297..401
e-value: 1.79616E-57
score: 187.395
IPR011991Winged helix-turn-helix DNA-binding domainGENE3D1.10.10.10coord: 205..297
e-value: 6.7E-34
score: 115.3
IPR011991Winged helix-turn-helix DNA-binding domainSUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 211..293
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..212
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 508..529
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 463..494
NoneNo IPR availableSUPERFAMILY144074E2F-DP heterodimerization regioncoord: 299..442

Blast
[Close]
BLAST of TCONS_00072622-protein vs. Swiss-Prot (Human)
Match: TFDP1 (Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1 PE=1 SV=1)

HSP 1 Score: 368.622 bits (945), Expect = 9.131e-124
Identity = 177/243 (72.84%), Postives = 208/243 (85.60%), Query Frame = 0 
Query:  202 NRCGPEKSGKGLRHFSMKVCEKVQQKGITSYNEVADELVQEFSEQNIKNPIQPADQSYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWVGLPTNSAQECKHLEEQKGERIERIRQKQQQLKELLVQQIAFKNLVERNKRNEKKNG-PPQSNACIHLPFIIVNTSKKTVIDCSISSDKSEYLFNFDEAFEIHDDIEVLKRMGLSFGLEKGVCTDKNLKSARTMVPKALEPYVSQMANGTYGNM 443
            NR G EK+GKGLRHFSMKVCEKVQ+KG TSYNEVADELV EFS  +  N I P + +YDQKNIRRRVYDALNVLMAMNIISKEKKEIKW+GLPTNSAQEC++LE ++  R+ERI+QKQ QL+EL++QQIAFKNLV+RN+  E++   PP  N+ IHLPFIIVNTSKKTVIDCSIS+DK EYLFNFD  FEIHDDIEVLKRMG++ GLE G C+ ++LK AR++VPKALEPYV++MA GT G +
Sbjct:  106 NRKG-EKNGKGLRHFSMKVCEKVQRKGTTSYNEVADELVAEFSAAD--NHILPNESAYDQKNIRRRVYDALNVLMAMNIISKEKKEIKWIGLPTNSAQECQNLEVERQRRLERIKQKQSQLQELILQQIAFKNLVQRNRHAEQQASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVLKRMGMACGLESGSCSAEDLKMARSLVPKALEPYVTEMAQGTVGGV 345
The following BLAST results are available for this feature:
BLAST of TCONS_00072622-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TFDP19.131e-12472.84Transcription factor Dp-1 OS=Homo sapiens GN=TFDP1... [more]
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