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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=transcript|length=2012bp
TTGGTGGATAGActtttttaaagatatgattgaTGATGGATTGTATGATC
CTAGTTTGAATTATCATTTGCAGTGTGCAAGGTTTTGTTTTACTGGAGTT
ATACAGCAAGAGTTAGATGAATTTCGAAAGATTTGGAACACTCATAGAAT
TCGACATGTGAATAATTCAGAGTGCCCGGCGGGAAAACCAGATCTTTTAT
ACGACTTATCCGCGCGATATGGTGGAAGAGACTGTAGGTTTGATATTTTA
GGTCAAGATTTAGATGCATTGACGGATGACATGATCAAACAACCTTTAAT
GTTCGGCTGCTCACAGGAATGTGTACAGTTTGCAAGAATCATTATGGGAG
AACATGGTTTAACTTATCCCCAAACAGTTGCACAAGCCAAAAATCTTTTC
GAAATCCTAGTTGGTACATTTGACCATTTTGTGCAATAAGTTCtctaaat
ttgttgttctaGTATATACTATATATTACCGTGATATTATTCAAATACAT
GAAACTTTTCaagcttttctttttttcatcttttcaaaAGTGGCAAAGTT
CTTATGAGAAAAATCGCTCATCTTGACCATTTAATTTGCTGCTAATGATA
AGCAAGTATGCTTTGTACTAATAATCTAATAGGAAAATATCGAAAACTGA
TTAGCTCATTTCCCATCCTCTTTTCACAAACCCTGGTCTAATGTTACTAA
TGTAACGTTTCTtccttttaaccctttaagtgccgagcCCTTTTTTCTtc
taagtttttaaaaaaaattaacaagttcAAAGCAGTTCAAAGTCAAACTT
TAAACGGCCTATGGGACCACTAGTCTAATAAATACTGCAGGAACAAATTT
TGAGGTTTTTGGTTCACTTGTTAACCAAATATGGTGtcaataaaaggtca
aaatttcagaaaataacTAGAACAAAATAGTTAGAATTGCAAAGTTTTAG
TATAAGTCTACTGTGTATATAACATATGTCAATTTTAGctttcagttttc
ttgtctTGAAGGATGCTACAGTTCGAAAAtatttcgaatgtttatgtcAC
GTGATACGCAATCTGTAACGCAAAAAAAATCGACCcacgtgaaaaaaaat
ttggaccCACGCACAAAAAgctttgacccacgcacccacacTGGTTTACA
ACCCACGCACCCatgcaatttagcagactcgtatTTATCCAAGGAGCAAG
TATCCAGGAGGCAAAATGAGAATCTTTGCTTTTAGCGCCCGCTAATTAGT
CTATTTTGCGCCCCTTCCATTAAAAACTACGATGTCGTTATGTtgcttat
tttttgttttgatataagACAATGAATGCGagcgaaatttaaaaaaaaat
tctttactgTTGAGATcactttaaccctatttttatcaggggggNATTTT
TCTATATTTGCCCAGCCAACAACCTCAAACATAAAAAACCTTTCATTAAG
GGCAGCTAGGATCGCCCTTCTTCAACTACCATGTTTCCAACTACAAAGAT
TAACTAACAGTatggattttttcaaaaaagcaatgaGTGCTGAATTATTT
GAGTATCTACGCGTATCACAATACCCAACATGTGATACTGTGATTGACTA
CATTATTGCAGATGAAAAAACTCCCCAAGAGGGTAGAATTATCACATGGC
TCCAGCGTTACATTAGATCGTGTGGTATCAAAGAACTCCAAAACTTTCTG
AGATTTGTCACGTCAGTATCTTCGGTTATTggtggaaaaattaaaattat
gttCCTTGACCAACAACGTGCACACCTTCGACCGAGACCACAGACCTGTT
TTTCAATCCTACGACTACCAAGGCAATATTCAAGCTTCACCGAGCTGCaa
aacaattttaatttttacattCAGAACCCTATTGATGTTGCTTGGGAAAT
GCACGACTGAGAGTGGGATCATCCttatattatattttctttgttatgtt
atttttgtttttttggggtGAGGGGTGGAAGAAAGTCTTAAATGGTCGAT
TATGTTGTCCCC Run BLAST on NCBI protein sequence of TCONS_00072598-protein >TCONS_00072598-protein ID=TCONS_00072598-protein|Name=TCONS_00072598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MRAKFKKKFFTVEITLTLFLSGGXFSIFAQPTTSNIKNLSLRAARIALLQ
LPCFQLQRLTNSMDFFKKAMSAELFEYLRVSQYPTCDTVIDYIIADEKTP
QEGRIITWLQRYIRSCGIKELQNFLRFVTSVSSVIGGKIKIMFLDQQRAH
LRPRPQTCFSILRLPRQYSSFTELQNNFNFYIQNPIDVAWEMHD Run BLAST on NCBI transcript from alignment at scaffold_8:254681..256692 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at scaffold_8:254681..256692 (Clytia hemisphaerica)
GGGGACAACATAATCGACCATTTAAGACTTTCTTCCACCCCTCaccccaa
aaaaacaaaaataacataacaaagaaaatataatataaGGATGATCCCAC
TCTCAGTCGTGCATTTCCCAAGCAACATCAATAGGGTTCTGaatgtaaaa
attaaaattgttttGCAGCTCGGTGAAGCTTGAATATTGCCTTGGTAGTC
GTAGGATTGAAAAACAGGTCTGTGGTCTCGGTCGAAGGTGTGCACGTTGT
TGGTCAAGGaacataattttaatttttccaccAATAACCGAAGATACTGA
CGTGACAAATCTCAGAAAGTTTTGGAGTTCTTTGATACCACACGATCTAA
TGTAACGCTGGAGCCATGTGATAATTCTACCCTCTTGGGGAGTTTTTTCA
TCTGCAATAATGTAGTCAATCACAGTATCACATGTTGGGTATTGTGATAC
GCGTAGATACTCAAATAATTCAGCACtcattgcttttttgaaaaaatcca
tACTGTTAGTTAATCTTTGTAGTTGGAAACATGGTAGTTGAAGAAGGGCG
ATCCTAGCTGCCCTTAATGAAAGGTTTTTTATGTTTGAGGTTGTTGGCTG
GGCAAATATAGAAAAATNcccccctgataaaaatagggttaaagtgATCT
CAAcagtaaagaatttttttttaaatttcgctCGCATTCATTGTcttata
tcaaaacaaaaaataagcaACATAACGACATCGTAGTTTTTAATGGAAGG
GGCGCAAAATAGACTAATTAGCGGGCGCTAAAAGCAAAGATTCTCATTTT
GCCTCCTGGATACTTGCTCCTTGGATAAatacgagtctgctaaattgcat
GGGTGCGTGGGTTGTAAACCAgtgtgggtgcgtgggtcaaagcTTTTTGT
GCGTGggtccaaattttttttcacgtgGGTCGATTTTTTTTGCGTTACAG
ATTGCGTATCACGTgacataaacattcgaaataTTTTCGAACTGTAGCAT
CCTTCAagacaagaaaactgaaagCTAAAATTGACATATGTTATATACAC
AGTAGACTTATACTAAAACTTTGCAATTCTAACTATTTTGTTCTAgttat
tttctgaaattttgaccttttattgaCACCATATTTGGTTAACAAGTGAA
CCAAAAACCTCAAAATTTGTTCCTGCAGTATTTATTAGACTAGTGGTCCC
ATAGGCCGTTTAAAGTTTGACTTTGAACTGCTTTgaacttgttaattttt
tttaaaaacttagaAGAAAAAAGGgctcggcacttaaagggttaaaagga
AGAAACGTTACATTAGTAACATTAGACCAGGGTTTGTGAAAAGAGGATGG
GAAATGAGCTAATCAGTTTTCGATATTTTCCTATTAGATTATTAGTACAA
AGCATACTTGCTTATCATTAGCAGCAAATTAAATGGTCAAGATGAGCGAT
TTTTCTCATAAGAACTTTGCCACTtttgaaaagatgaaaaaaagaaaagc
ttGAAAAGTTTCATGTATTTGAATAATATCACGGTAATATATAGTATATA
CtagaacaacaaatttagaGAACTTATTGCACAAAATGGTCAAATGTACC
AACTAGGATTTCGAAAAGATTTTTGGCTTGTGCAACTGTTTGGGGATAAG
TTAAACCATGTTCTCCCATAATGATTCTTGCAAACTGTACACATTCCTGT
GAGCAGCCGAACATTAAAGGTTGTTTGATCATGTCATCCGTCAATGCATC
TAAATCTTGACCTAAAATATCAAACCTACAGTCTCTTCCACCATATCGCG
CGGATAAGTCGTATAAAAGATCTGGTTTTCCCGCCGGGCACTCTGAATTA
TTCACATGTCGAATTCTATGAGTGTTCCAAATCTTTCGAAATTCATCTAA
CTCTTGCTGTATAACTCCAGTAAAACAAAACCTTGCACACTGCAAATGAT
AATTCAAACTAGGATCATACAATCCATCAtcaatcatatctttaaaaaag
TCTATCCACCAA Coding sequence (CDS) from alignment at scaffold_8:254681..256692 >TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_8:254681..256692 (Clytia hemisphaerica)
TCAGTCGTGCATTTCCCAAGCAACATCAATAGGGTTCTGaatgtaaaaat
taaaattgttttGCAGCTCGGTGAAGCTTGAATATTGCCTTGGTAGTCGT
AGGATTGAAAAACAGGTCTGTGGTCTCGGTCGAAGGTGTGCACGTTGTTG
GTCAAGGaacataattttaatttttccaccAATAACCGAAGATACTGACG
TGACAAATCTCAGAAAGTTTTGGAGTTCTTTGATACCACACGATCTAATG
TAACGCTGGAGCCATGTGATAATTCTACCCTCTTGGGGAGTTTTTTCATC
TGCAATAATGTAGTCAATCACAGTATCACATGTTGGGTATTGTGATACGC
GTAGATACTCAAATAATTCAGCACtcattgcttttttgaaaaaatccatA
CTGTTAGTTAATCTTTGTAGTTGGAAACATGGTAGTTGAAGAAGGGCGAT
CCTAGCTGCCCTTAATGAAAGGTTTTTTATGTTTGAGGTTGTTGGCTGGG
CAAATATAGAAAAATNcccccctgataaaaatagggttaaagtgATCTCA
AcagtaaagaatttttttttaaatttcgctCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072598-exon-scaffold_8-1491911889:254681..256692 | TCONS_00072598-exon-scaffold_8-1491911889:254681..256692 | Clytia hemisphaerica | exon |
| TCONS_00072598-exon-scaffold_8-1510915933:254681..256692 | TCONS_00072598-exon-scaffold_8-1510915933:254681..256692 | Clytia hemisphaerica | exon |
| TCONS_00072598-exon-scaffold_8-1575043694:254681..256692 | TCONS_00072598-exon-scaffold_8-1575043694:254681..256692 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:254681..256692 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000569 | HECT_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004842 | ubiquitin-protein transferase activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0004842 |
ubiquitin-protein transferase activity |
Blast
The following BLAST results are available for this feature:
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