TCONS_00072598 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072598
Unique NameTCONS_00072598
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2012

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=transcript|length=2012bp
TTGGTGGATAGActtttttaaagatatgattgaTGATGGATTGTATGATC
CTAGTTTGAATTATCATTTGCAGTGTGCAAGGTTTTGTTTTACTGGAGTT
ATACAGCAAGAGTTAGATGAATTTCGAAAGATTTGGAACACTCATAGAAT
TCGACATGTGAATAATTCAGAGTGCCCGGCGGGAAAACCAGATCTTTTAT
ACGACTTATCCGCGCGATATGGTGGAAGAGACTGTAGGTTTGATATTTTA
GGTCAAGATTTAGATGCATTGACGGATGACATGATCAAACAACCTTTAAT
GTTCGGCTGCTCACAGGAATGTGTACAGTTTGCAAGAATCATTATGGGAG
AACATGGTTTAACTTATCCCCAAACAGTTGCACAAGCCAAAAATCTTTTC
GAAATCCTAGTTGGTACATTTGACCATTTTGTGCAATAAGTTCtctaaat
ttgttgttctaGTATATACTATATATTACCGTGATATTATTCAAATACAT
GAAACTTTTCaagcttttctttttttcatcttttcaaaAGTGGCAAAGTT
CTTATGAGAAAAATCGCTCATCTTGACCATTTAATTTGCTGCTAATGATA
AGCAAGTATGCTTTGTACTAATAATCTAATAGGAAAATATCGAAAACTGA
TTAGCTCATTTCCCATCCTCTTTTCACAAACCCTGGTCTAATGTTACTAA
TGTAACGTTTCTtccttttaaccctttaagtgccgagcCCTTTTTTCTtc
taagtttttaaaaaaaattaacaagttcAAAGCAGTTCAAAGTCAAACTT
TAAACGGCCTATGGGACCACTAGTCTAATAAATACTGCAGGAACAAATTT
TGAGGTTTTTGGTTCACTTGTTAACCAAATATGGTGtcaataaaaggtca
aaatttcagaaaataacTAGAACAAAATAGTTAGAATTGCAAAGTTTTAG
TATAAGTCTACTGTGTATATAACATATGTCAATTTTAGctttcagttttc
ttgtctTGAAGGATGCTACAGTTCGAAAAtatttcgaatgtttatgtcAC
GTGATACGCAATCTGTAACGCAAAAAAAATCGACCcacgtgaaaaaaaat
ttggaccCACGCACAAAAAgctttgacccacgcacccacacTGGTTTACA
ACCCACGCACCCatgcaatttagcagactcgtatTTATCCAAGGAGCAAG
TATCCAGGAGGCAAAATGAGAATCTTTGCTTTTAGCGCCCGCTAATTAGT
CTATTTTGCGCCCCTTCCATTAAAAACTACGATGTCGTTATGTtgcttat
tttttgttttgatataagACAATGAATGCGagcgaaatttaaaaaaaaat
tctttactgTTGAGATcactttaaccctatttttatcaggggggNATTTT
TCTATATTTGCCCAGCCAACAACCTCAAACATAAAAAACCTTTCATTAAG
GGCAGCTAGGATCGCCCTTCTTCAACTACCATGTTTCCAACTACAAAGAT
TAACTAACAGTatggattttttcaaaaaagcaatgaGTGCTGAATTATTT
GAGTATCTACGCGTATCACAATACCCAACATGTGATACTGTGATTGACTA
CATTATTGCAGATGAAAAAACTCCCCAAGAGGGTAGAATTATCACATGGC
TCCAGCGTTACATTAGATCGTGTGGTATCAAAGAACTCCAAAACTTTCTG
AGATTTGTCACGTCAGTATCTTCGGTTATTggtggaaaaattaaaattat
gttCCTTGACCAACAACGTGCACACCTTCGACCGAGACCACAGACCTGTT
TTTCAATCCTACGACTACCAAGGCAATATTCAAGCTTCACCGAGCTGCaa
aacaattttaatttttacattCAGAACCCTATTGATGTTGCTTGGGAAAT
GCACGACTGAGAGTGGGATCATCCttatattatattttctttgttatgtt
atttttgtttttttggggtGAGGGGTGGAAGAAAGTCTTAAATGGTCGAT
TATGTTGTCCCC
Run BLAST on NCBI

protein sequence of TCONS_00072598-protein

>TCONS_00072598-protein ID=TCONS_00072598-protein|Name=TCONS_00072598-protein|organism=Clytia hemisphaerica|type=polypeptide|length=194bp
MRAKFKKKFFTVEITLTLFLSGGXFSIFAQPTTSNIKNLSLRAARIALLQ
LPCFQLQRLTNSMDFFKKAMSAELFEYLRVSQYPTCDTVIDYIIADEKTP
QEGRIITWLQRYIRSCGIKELQNFLRFVTSVSSVIGGKIKIMFLDQQRAH
LRPRPQTCFSILRLPRQYSSFTELQNNFNFYIQNPIDVAWEMHD
Run BLAST on NCBI

transcript from alignment at scaffold_8:254681..256692

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=transcript|length=2012bp|location=Sequence derived from alignment at scaffold_8:254681..256692 (Clytia hemisphaerica)
GGGGACAACATAATCGACCATTTAAGACTTTCTTCCACCCCTCaccccaa aaaaacaaaaataacataacaaagaaaatataatataaGGATGATCCCAC TCTCAGTCGTGCATTTCCCAAGCAACATCAATAGGGTTCTGaatgtaaaa attaaaattgttttGCAGCTCGGTGAAGCTTGAATATTGCCTTGGTAGTC GTAGGATTGAAAAACAGGTCTGTGGTCTCGGTCGAAGGTGTGCACGTTGT TGGTCAAGGaacataattttaatttttccaccAATAACCGAAGATACTGA CGTGACAAATCTCAGAAAGTTTTGGAGTTCTTTGATACCACACGATCTAA TGTAACGCTGGAGCCATGTGATAATTCTACCCTCTTGGGGAGTTTTTTCA TCTGCAATAATGTAGTCAATCACAGTATCACATGTTGGGTATTGTGATAC GCGTAGATACTCAAATAATTCAGCACtcattgcttttttgaaaaaatcca tACTGTTAGTTAATCTTTGTAGTTGGAAACATGGTAGTTGAAGAAGGGCG ATCCTAGCTGCCCTTAATGAAAGGTTTTTTATGTTTGAGGTTGTTGGCTG GGCAAATATAGAAAAATNcccccctgataaaaatagggttaaagtgATCT CAAcagtaaagaatttttttttaaatttcgctCGCATTCATTGTcttata tcaaaacaaaaaataagcaACATAACGACATCGTAGTTTTTAATGGAAGG GGCGCAAAATAGACTAATTAGCGGGCGCTAAAAGCAAAGATTCTCATTTT GCCTCCTGGATACTTGCTCCTTGGATAAatacgagtctgctaaattgcat GGGTGCGTGGGTTGTAAACCAgtgtgggtgcgtgggtcaaagcTTTTTGT GCGTGggtccaaattttttttcacgtgGGTCGATTTTTTTTGCGTTACAG ATTGCGTATCACGTgacataaacattcgaaataTTTTCGAACTGTAGCAT CCTTCAagacaagaaaactgaaagCTAAAATTGACATATGTTATATACAC AGTAGACTTATACTAAAACTTTGCAATTCTAACTATTTTGTTCTAgttat tttctgaaattttgaccttttattgaCACCATATTTGGTTAACAAGTGAA CCAAAAACCTCAAAATTTGTTCCTGCAGTATTTATTAGACTAGTGGTCCC ATAGGCCGTTTAAAGTTTGACTTTGAACTGCTTTgaacttgttaattttt tttaaaaacttagaAGAAAAAAGGgctcggcacttaaagggttaaaagga AGAAACGTTACATTAGTAACATTAGACCAGGGTTTGTGAAAAGAGGATGG GAAATGAGCTAATCAGTTTTCGATATTTTCCTATTAGATTATTAGTACAA AGCATACTTGCTTATCATTAGCAGCAAATTAAATGGTCAAGATGAGCGAT TTTTCTCATAAGAACTTTGCCACTtttgaaaagatgaaaaaaagaaaagc ttGAAAAGTTTCATGTATTTGAATAATATCACGGTAATATATAGTATATA CtagaacaacaaatttagaGAACTTATTGCACAAAATGGTCAAATGTACC AACTAGGATTTCGAAAAGATTTTTGGCTTGTGCAACTGTTTGGGGATAAG TTAAACCATGTTCTCCCATAATGATTCTTGCAAACTGTACACATTCCTGT GAGCAGCCGAACATTAAAGGTTGTTTGATCATGTCATCCGTCAATGCATC TAAATCTTGACCTAAAATATCAAACCTACAGTCTCTTCCACCATATCGCG CGGATAAGTCGTATAAAAGATCTGGTTTTCCCGCCGGGCACTCTGAATTA TTCACATGTCGAATTCTATGAGTGTTCCAAATCTTTCGAAATTCATCTAA CTCTTGCTGTATAACTCCAGTAAAACAAAACCTTGCACACTGCAAATGAT AATTCAAACTAGGATCATACAATCCATCAtcaatcatatctttaaaaaag TCTATCCACCAA

Coding sequence (CDS) from alignment at scaffold_8:254681..256692

>TCONS_00072598 ID=TCONS_00072598|Name=TCONS_00072598|organism=Clytia hemisphaerica|type=CDS|length=585bp|location=Sequence derived from alignment at scaffold_8:254681..256692 (Clytia hemisphaerica)
TCAGTCGTGCATTTCCCAAGCAACATCAATAGGGTTCTGaatgtaaaaat
taaaattgttttGCAGCTCGGTGAAGCTTGAATATTGCCTTGGTAGTCGT
AGGATTGAAAAACAGGTCTGTGGTCTCGGTCGAAGGTGTGCACGTTGTTG
GTCAAGGaacataattttaatttttccaccAATAACCGAAGATACTGACG
TGACAAATCTCAGAAAGTTTTGGAGTTCTTTGATACCACACGATCTAATG
TAACGCTGGAGCCATGTGATAATTCTACCCTCTTGGGGAGTTTTTTCATC
TGCAATAATGTAGTCAATCACAGTATCACATGTTGGGTATTGTGATACGC
GTAGATACTCAAATAATTCAGCACtcattgcttttttgaaaaaatccatA
CTGTTAGTTAATCTTTGTAGTTGGAAACATGGTAGTTGAAGAAGGGCGAT
CCTAGCTGCCCTTAATGAAAGGTTTTTTATGTTTGAGGTTGTTGGCTGGG
CAAATATAGAAAAATNcccccctgataaaaatagggttaaagtgATCTCA
AcagtaaagaatttttttttaaatttcgctCGCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045058XLOC_045058Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072598-proteinTCONS_00072598-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072598-exon-scaffold_8-1491911889:254681..256692TCONS_00072598-exon-scaffold_8-1491911889:254681..256692Clytia hemisphaericaexon
TCONS_00072598-exon-scaffold_8-1510915933:254681..256692TCONS_00072598-exon-scaffold_8-1510915933:254681..256692Clytia hemisphaericaexon
TCONS_00072598-exon-scaffold_8-1575043694:254681..256692TCONS_00072598-exon-scaffold_8-1575043694:254681..256692Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:254681..256692 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07372 1.69663 1.10705 0.935493 11.0788 6.65301 6.88784 7.94403 2.56045 2.66032 2.45171 2.61975 2.20276 2.4802 1.19015 0.721433 1.37782 0.76885 0.648432 0.429489 2.71388 2.84638 1.29821 1.40395 4.74183 6.51718 1.46115 1.57778 1.31403 1.15887
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000569HECT_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004842ubiquitin-protein transferase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0004842 ubiquitin-protein transferase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072598 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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