TCONS_00072597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072597
Unique NameTCONS_00072597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072597 ID=TCONS_00072597|Name=TCONS_00072597|organism=Clytia hemisphaerica|type=transcript|length=690bp
ATAAATTCCTTTGATAGAACATAAGTCTTGAATGGCAAATCCTTTGTCAC
TCATAACCTCATGACCCTCTTCAACAAATTGCAAAATCCCTGTTTTCTCA
GTAATTGATAAATCTGAGATTGAGCCTGGATAAACATCACTGAAAATTAA
ACCCATACCGTGTGGAGCAATTCCAACCAAAACCTTGCCTGTTGTCGTGT
TTTTATAATTGGAAAACATTAAGCTGCTAAGTTCATAATTTGAGGCTGCT
TGAAACTTAAATTCTGTTGCATCAATAATCAAATCTGTAGTACCATGTCC
TGTTTTGACAAAAGCTTCAGGCatcatttttaacaaaaaccCATGACTTG
GCGTCAAATCGATTCTGTTGAAAACAGTTGAGAGAAATATAACCCAGGCA
TTGAATATTCTGCTTACAGTTGAGGGAGAAGAATTAAGAATGAAAGCCAT
TAATTTTTGATCCATTCCGTGACGACAAATTGTTAAGGTGACAAGGAGTT
GAGTCTCAAGGGAAAATTTAGTTACTTTGCGATTGTCAGGATAAGGTATA
AGGTGTGTGTAAGGTTGGATGCAATCGAAaatcaagttaaatttttcaag
atCGATACCGCATAAATATTCAATAGCTTTTTCATTTGGCTGTGTTAATG
TAAGAGTTTCATAATTTATTTCAGTAGCTTGTAGGTCGTA
Run BLAST on NCBI

protein sequence of TCONS_00072597-protein

>TCONS_00072597-protein ID=TCONS_00072597-protein|Name=TCONS_00072597-protein|organism=Clytia hemisphaerica|type=polypeptide|length=230bp
YDLQATEINYETLTLTQPNEKAIEYLCGIDLEKFNLIFDCIQPYTHLIPY
PDNRKVTKFSLETQLLVTLTICRHGMDQKLMAFILNSSPSTVSRIFNAWV
IFLSTVFNRIDLTPSHGFLLKMMPEAFVKTGHGTTDLIIDATEFKFQAAS
NYELSSLMFSNYKNTTTGKVLVGIAPHGMGLIFSDVYPGSISDLSITEKT
GILQFVEEGHEVMSDKGFAIQDLCSIKGIY
Run BLAST on NCBI

transcript from alignment at scaffold_8:221631..222320

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072597 ID=TCONS_00072597|Name=TCONS_00072597|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at scaffold_8:221631..222320 (Clytia hemisphaerica)
TACGACCTACAAGCTACTGAAATAAATTATGAAACTCTTACATTAACACA
GCCAAATGAAAAAGCTATTGAATATTTATGCGGTATCGatcttgaaaaat
ttaacttgattTTCGATTGCATCCAACCTTACACACACCTTATACCTTAT
CCTGACAATCGCAAAGTAACTAAATTTTCCCTTGAGACTCAACTCCTTGT
CACCTTAACAATTTGTCGTCACGGAATGGATCAAAAATTAATGGCTTTCA
TTCTTAATTCTTCTCCCTCAACTGTAAGCAGAATATTCAATGCCTGGGTT
ATATTTCTCTCAACTGTTTTCAACAGAATCGATTTGACGCCAAGTCATGg
gtttttgttaaaaatgatGCCTGAAGCTTTTGTCAAAACAGGACATGGTA
CTACAGATTTGATTATTGATGCAACAGAATTTAAGTTTCAAGCAGCCTCA
AATTATGAACTTAGCAGCTTAATGTTTTCCAATTATAAAAACACGACAAC
AGGCAAGGTTTTGGTTGGAATTGCTCCACACGGTATGGGTTTAATTTTCA
GTGATGTTTATCCAGGCTCAATCTCAGATTTATCAATTACTGAGAAAACA
GGGATTTTGCAATTTGTTGAAGAGGGTCATGAGGTTATGAGTGACAAAGG
ATTTGCCATTCAAGACTTATGTTCTATCAAAGGAATTTAT

Coding sequence (CDS) from alignment at scaffold_8:221631..222320

>TCONS_00072597 ID=TCONS_00072597|Name=TCONS_00072597|organism=Clytia hemisphaerica|type=CDS|length=690bp|location=Sequence derived from alignment at scaffold_8:221631..222320 (Clytia hemisphaerica)
TACGACCTACAAGCTACTGAAATAAATTATGAAACTCTTACATTAACACA
GCCAAATGAAAAAGCTATTGAATATTTATGCGGTATCGatcttgaaaaat
ttaacttgattTTCGATTGCATCCAACCTTACACACACCTTATACCTTAT
CCTGACAATCGCAAAGTAACTAAATTTTCCCTTGAGACTCAACTCCTTGT
CACCTTAACAATTTGTCGTCACGGAATGGATCAAAAATTAATGGCTTTCA
TTCTTAATTCTTCTCCCTCAACTGTAAGCAGAATATTCAATGCCTGGGTT
ATATTTCTCTCAACTGTTTTCAACAGAATCGATTTGACGCCAAGTCATGg
gtttttgttaaaaatgatGCCTGAAGCTTTTGTCAAAACAGGACATGGTA
CTACAGATTTGATTATTGATGCAACAGAATTTAAGTTTCAAGCAGCCTCA
AATTATGAACTTAGCAGCTTAATGTTTTCCAATTATAAAAACACGACAAC
AGGCAAGGTTTTGGTTGGAATTGCTCCACACGGTATGGGTTTAATTTTCA
GTGATGTTTATCCAGGCTCAATCTCAGATTTATCAATTACTGAGAAAACA
GGGATTTTGCAATTTGTTGAAGAGGGTCATGAGGTTATGAGTGACAAAGG
ATTTGCCATTCAAGACTTATGTTCTATCAAAGGAATTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045057XLOC_045057Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072597-exon-scaffold_8-1491911889:221631..222320TCONS_00072597-exon-scaffold_8-1491911889:221631..222320Clytia hemisphaericaexon
TCONS_00072597-exon-scaffold_8-1510915933:221631..222320TCONS_00072597-exon-scaffold_8-1510915933:221631..222320Clytia hemisphaericaexon
TCONS_00072597-exon-scaffold_8-1575043694:221631..222320TCONS_00072597-exon-scaffold_8-1575043694:221631..222320Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072597-proteinTCONS_00072597-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:221631..222320 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.29111	1.56904	1.28065	0.518987	2.39354	2.35801	2.72939	2.98096	2.05634	1.96158	3.27229	1.06241	1.50573	2.10816	1.40623	1.61684	1.03303	1.0682	1.40011	2.08934	1.92747	1.37982	1.91423	1.64941	2.58473	4.7353	2.68203	0.971428	1.03069	1.39338
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR027806HARBI1_dom
IPR027805Transposase_HTH_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top