TCONS_00072594 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072594
Unique NameTCONS_00072594
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072594 ID=TCONS_00072594|Name=TCONS_00072594|organism=Clytia hemisphaerica|type=transcript|length=382bp
TCTCCGGTAAGGTAAGGTGCGTATGCAATTGGACGCTTGTGTATCCTTTC
CAGGGCATACTGAACCATTTTTACTTGACAGATATCTTCGCACAATACCA
CAACTTCTTCCTCCTTTCTCTCATTCAAACAGAACTGGAGGATGGCAGCT
AGTATCGGAAGGAACCAAGCATATAAAGGTGTGAAGGCTTTGGTGAAATG
AAAGATTCGTGGTTTTAAAAAGCTCCCGAAAGAATGTCCACATTTCCCTT
TCATATAAGTGTATGTAGTGGACAGTTCTTTCAcgacttcttcattttca
ttcgtCTGTAGCTGCGACTTAAAAACGTTTTCAGGGTCGCGTAGCTTTGT
TGGGTCAAATGATTCGCTTGCTTCTCGATCTT
Run BLAST on NCBI

protein sequence of TCONS_00072594-protein

>TCONS_00072594-protein ID=TCONS_00072594-protein|Name=TCONS_00072594-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
DREASESFDPTKLRDPENVFKSQLQTNENEEVVKELSTTYTYMKGKCGHS
FGSFLKPRIFHFTKAFTPLYAWFLPILAAILQFCLNERKEEEVVVLCEDI
CQVKMVQYALERIHKRPIAYAPYLTG
Run BLAST on NCBI

transcript from alignment at scaffold_8:203478..203859

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072594 ID=TCONS_00072594|Name=TCONS_00072594|organism=Clytia hemisphaerica|type=transcript|length=382bp|location=Sequence derived from alignment at scaffold_8:203478..203859 (Clytia hemisphaerica)
AAGATCGAGAAGCAAGCGAATCATTTGACCCAACAAAGCTACGCGACCCT
GAAAACGTTTTTAAGTCGCAGCTACAGacgaatgaaaatgaagaagtcgT
GAAAGAACTGTCCACTACATACACTTATATGAAAGGGAAATGTGGACATT
CTTTCGGGAGCTTTTTAAAACCACGAATCTTTCATTTCACCAAAGCCTTC
ACACCTTTATATGCTTGGTTCCTTCCGATACTAGCTGCCATCCTCCAGTT
CTGTTTGAATGAGAGAAAGGAGGAAGAAGTTGTGGTATTGTGCGAAGATA
TCTGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAAGCGT
CCAATTGCATACGCACCTTACCTTACCGGAGA

Coding sequence (CDS) from alignment at scaffold_8:203478..203859

>TCONS_00072594 ID=TCONS_00072594|Name=TCONS_00072594|organism=Clytia hemisphaerica|type=CDS|length=378bp|location=Sequence derived from alignment at scaffold_8:203478..203859 (Clytia hemisphaerica)
GATCGAGAAGCAAGCGAATCATTTGACCCAACAAAGCTACGCGACCCTGA
AAACGTTTTTAAGTCGCAGCTACAGacgaatgaaaatgaagaagtcgTGA
AAGAACTGTCCACTACATACACTTATATGAAAGGGAAATGTGGACATTCT
TTCGGGAGCTTTTTAAAACCACGAATCTTTCATTTCACCAAAGCCTTCAC
ACCTTTATATGCTTGGTTCCTTCCGATACTAGCTGCCATCCTCCAGTTCT
GTTTGAATGAGAGAAAGGAGGAAGAAGTTGTGGTATTGTGCGAAGATATC
TGTCAAGTAAAAATGGTTCAGTATGCCCTGGAAAGGATACACAAGCGTCC
AATTGCATACGCACCTTACCTTACCGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045054XLOC_045054Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072594-proteinTCONS_00072594-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072594-exon-scaffold_8-1491911889:203478..203859TCONS_00072594-exon-scaffold_8-1491911889:203478..203859Clytia hemisphaericaexon
TCONS_00072594-exon-scaffold_8-1510915933:203478..203859TCONS_00072594-exon-scaffold_8-1510915933:203478..203859Clytia hemisphaericaexon
TCONS_00072594-exon-scaffold_8-1575043694:203478..203859TCONS_00072594-exon-scaffold_8-1575043694:203478..203859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:203478..203859 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.205074	0	0	0	0	0	0.376297	0.402986	0	0.314169	1.278	0.188961	0.929041	0.188695	0.15695	0.521388	0.223794	0.216571	0.28948	0.607189	0.289371	0	0.633917	0	0.717758	0	2.60159	1.22551	2.59601	1.47208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072594 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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