TCONS_00072577 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00072577
Unique Name	TCONS_00072577
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1080

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_8:488243..490971-
coding sequence from alignment at scaffold_8:488243..490971-

transcript sequence

>TCONS_00072577 ID=TCONS_00072577|Name=TCONS_00072577|organism=Clytia hemisphaerica|type=transcript|length=1080bp
cAGATAAATACAACACacaagttaaagaaaataattttaataaaatacaa
aatagaaaaagatgGATATTCCACCAAATCAGACGATTTACATCAATAAT
TTgaacgaaaaaatgaaaaaagaagatcTAAAGAAACATCTTTATACTCT
GTTTTCACAGTTTGGACCTGTCATTGATATAGTTGCAATGAAAACACCAA
AGATGAGGGGTCAGGCTTTTGTTGTGTTCCGTGAAATTCCCATGGCAACA
AATGCATTGAGGAGCATGCAAGGTTTTATATTCTTCGATAAAGCAATGAG
GATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGGAA
CGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAagCACGT
AAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTTAA
AGAAACTAATGGCCATACACCAGCACCGCCAGCACCGAATGAGACTAATG
GGGATAAAACAGATGAAATACCAACTAATAATATCTTATTCTTATCAAAT
CTTCCCGATGAAACGACACAAATGATGTTATCTATGTTGTTTCAAGAGAT
GCCTGGGTTCAAAGATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCT
TCGTTGAATTCGACACACCATCACAAGCACAAGTGGCAAAAGATCAGTTA
GACGGCTTCAAAATTACACCTGAAAAAGCGATGGTCATTAAATATGCTAA
GCAGTGATGACGAATTCCTTAAACTAGACTTGTTTTTATATACTAAAAAT
ATTCCTATAGAAACAACTGTCCTAGCTAACCCAAGATAGCACAtACCATA
CGATTTTGAACAAAGAACTTGCTGGGGTCACGCTACTATTCAAATGATTT
TAATGGACTCTTaaaatgtgtcaatttttgtggcgtttttttagttaaca
atgtaaatatattttttgttttaaaagtgGTACTTTAACAGAAAATAtag
attctttattttttttttccttagTGCCAAGATCTATGTAACAAAATGAG
AAAGGACAAAAATCTTTCCTGAAATTCTAC

Run BLAST on NCBI

protein sequence of TCONS_00072577-protein

>TCONS_00072577-protein ID=TCONS_00072577-protein|Name=TCONS_00072577-protein|organism=Clytia hemisphaerica|type=polypeptide|length=231bp
MDIPPNQTIYINNLNEKMKKEDLKKHLYTLFSQFGPVIDIVAMKTPKMRG
QAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWT
KGKAEKRKAEEARKRQLAAKQARRETVPVKETNGHTPAPPAPNETNGDKT
DEIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEF
DTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ

Run BLAST on NCBI

transcript from alignment at scaffold_8:488243..490971-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00072577 ID=TCONS_00072577|Name=TCONS_00072577|organism=Clytia hemisphaerica|type=transcript|length=2729bp|location=Sequence derived from alignment at scaffold_8:488243..490971- (Clytia hemisphaerica)
CAGATAAATACAACACACAAGTTAAAGAAAATAATTTTAATAAAATACAA
AATAGAAAAAGATGGATATTCCACCAAATCAGACGATTTACATCAATAAT
TTGAACGAAAAAATGAAAAAAGAAGGTACTTATTATTTTGAAAGTTAATC
CTTTATCAAGTTCCAGTCTATCTTGTCTCAATTTCAACCAGGAGACTTTG
TAGTAAATATTGCAGTCAATGCATCTGATTATGCCTAAAAGTATATTAAT
CAGATTTTACACTCTTTATAGTAATTTGCTGATTTGCTAATGAATTTATA
ACATAAAATTAAACAGAAATTATATTTTTTGCTATTCTCTATTCATAATA
AGGAAAGAGCTCTCTGTTCTTTGCTTTATTTGTCATTATAGGCTCTATCC
AGCTCACTAATTTCTATCCTTTTCGAATTTTCTTCTTTTAGATCTAAAGA
AACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGATATAGTT
GCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCCGTGA
AATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATATTCT
TCGATAAAGCAATGGTATGCATTTTATTTCACCCCCTTCGGGAAACAGTT
TGAAAAAATAACCTTAGCTTATAGTAAGGGTAAAGGGGGGTAGAAATATT
CAGAGGAACGTTTTGGCCACTTTGGCGTTTTTTTTTTAATATAGGTAATA
CTGGGAGGAAATTACACTAAATACACTTTGAGTCAAATTGTATTAATTTG
TTATCTTAGTAACACTTATTTATACTTCTTTTTCAAGAGGATAACTTTTG
CGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGGAACGTATTGGACA
AAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAAGGTTTCTTTTTTAATTT
TTAGGAGATTTCCCAAGTTATTATCAATGTTTCATTTGAATAAGTTTAGG
TGCAACCAGTAATAGTAATGGTCATACCTATCTTCGAAAACGTTTTATTT
TTTGGTCTTTTTCTGTTTACTCATTCAAAGGGGGACATCGTCCAGGTCTT
GTACTCCTGAATTTTTTCTCATTAGTGTGTATTCTCAAGTNGGGACATCG
TCCAGGTCTTGTACTCCTGAATTTTTTCTCTTTAGTGTGTATTCTCAAGT
TTTTTTTATGGCATTTTACTTATAATTGGCTTTCTATTTCTCTAAAGCAC
GTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTT
AAAGGTTTGTAATGACATAGTTTACCTATTCAATTTATAGTTGTTTTCAT
TATAAGTTCAATAGATTATCAACTAAGGATTAACATATTGTTTGATGCAG
TTTGATGTCATAAATTTTGTTTGTTTTTTTTAATCGGAGATACTTTCGTA
TGAAAAATGATCATGATTATCTTTATTTTCTTAGAAACTAATGGCCATAC
ACCAGCACCGCCAGCACCGAATGAGACTAATGGGGATAAAACAGATGAAA
TACCAACTAATAATATCTTATTCTTATCAAATCTTCCCGATGAAACGACA
CAAATGATGTTATCTATGTTGTTTCAAGAGTGAGTTGATAGTTTTAAGTG
TTTAGTTGTCTTCATATTTTAATGCAGTTGCCCTCTGAAAGTTTTAAATG
TTTCAGAAAAGTCCCTACCCTAGTACACAGCAGGCAATAAAAGATGGGTC
TATTTCAGCCTTAAGGACTTAACTTGATCAGTTGAATCTATACGAACAGA
TTTAAAACTTTTCAAGAGCCAAGCCAAGAGTTTTCAATTTCACCGTATAA
TATGTTTAAAAAGTAAGTTTTTTTAATTACCTTTTGCCCTATTGGAAATC
TTTAGGATGTCTGTGGCTTTTTAAAGAAAAATTTGAAACAACCATTTCAC
AAGCAAGTCATTATACCAAAAGTACACAGGAATTGATTAAATTGAGAATC
TTTTTTATTCGTTTAGGATGCCTGGGTTCAAAGATGTACGGTTAGTAGAT
GGGAGGGCAGACATTGGCTTCGTTGAATTCGACACACCATCACAAGCACA
AGTGGCAAAAGATCAGTTAGACGGCTTCAAAATTACACCTGAAAAAGCGA
TGGTCATTAAATATGCTAAGCAGTGATGACGAATTCCTTAAACTAGACTT
GTTTTTATATACTAAAAATATTCCTATAGAAACAACTGTCCTAGCTAACC
CAAGATAGCACATGTAAAAATTTCATGTCAGGGTATTGAAGGGTCAATAT
TTCTAAAACTTTAAAACATATCAAATATGATTTTTAAAAGCATCAGGCTT
GCCAGTCAATTTATCTGGAGATGAGATTGTCATCATCACCATTGATTTGG
CTACTATGAATATACGGGTCCTCATATTGGTAGTGTACGTTTTGTGGCCT
TGGGTAGCTTATTTCCCCAATAAGTTGTTTTAATGTCATTTAGACCATAC
GATTTTGAACAAAGAACTTGCTGGGGTCACGCTACTATTCAAATGATTTT
AATGGACTCTTAAAATGTGTCAATTTTTGTGGCGTTTTTTTAGTTAACAA
TGTAAATATATTTTTTGTTTTAAAAGTGGTACTTTAACAGAAAATATAGA
TTCTTTATTTTTTTTTTCCTTAGTGCCAAGATCTATGTAACAAAATGAGA
AAGGACAAAAATCTTTCCTGAAATTCTAC

Coding sequence (CDS) from alignment at scaffold_8:488243..490971-

>TCONS_00072577 ID=TCONS_00072577|Name=TCONS_00072577|organism=Clytia hemisphaerica|type=CDS|length=4176bp|location=Sequence derived from alignment at scaffold_8:488243..490971- (Clytia hemisphaerica)
GATGCCTGGGTTCAAAGATGTACGGTTAGTAGATGGGAGGGCAGACATTG
GCTTCGTTGAATTCGACACACCATCACAAGCACAAGTGGCAAAAGATCAG
TTAGACGGCTTCAAAATTACACCTGAAAAAGCGATGGTCATTAAATATGC
TAAGCAGTGAAAACTAATGGCCATACACCAGCACCGCCAGCACCGAATGA
GACTAATGGGGATAAAACAGATGAAATACCAACTAATAATATCTTATTCT
TATCAAATCTTCCCGATGAAACGACACAAATGATGTTATCTATGTTGTTT
CAAGACACGTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAG
TACCAGTTAAAGAGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGC
AAAGAATGATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAG
CAGAAGAAGATCTAAAGAAACATCTTTATACTCTGTTTTCACAGTTTGGA
CCTGTCATTGATATAGTTGCAATGAAAACACCAAAGATGAGGGGTCAGGC
TTTTGTTGTGTTCCGTGAAATTCCCATGGCAACAAATGCATTGAGGAGCA
TGCAAGGTTTTATATTCTTCGATAAAGCAATGATGGATATTCCACCAAAT
CAGACGATTTACATCAATAATTTGAACGAAAAAATGAAAAAAGAAGGATG
CCTGGGTTCAAAGATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCTT
CGTTGAATTCGACACACCATCACAAGCACAAGTGGCAAAAGATCAGTTAG
ACGGCTTCAAAATTACACCTGAAAAAGCGATGGTCATTAAATATGCTAAG
CAGTGAAAACTAATGGCCATACACCAGCACCGCCAGCACCGAATGAGACT
AATGGGGATAAAACAGATGAAATACCAACTAATAATATCTTATTCTTATC
AAATCTTCCCGATGAAACGACACAAATGATGTTATCTATGTTGTTTCAAG
ACACGTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACC
AGTTAAAGAGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAG
AATGATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGA
AGAAGATCTAAAGAAACATCTTTATACTCTGTTTTCACAGTTTGGACCTG
TCATTGATATAGTTGCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTT
GTTGTGTTCCGTGAAATTCCCATGGCAACAAATGCATTGAGGAGCATGCA
AGGTTTTATATTCTTCGATAAAGCAATGATGGATATTCCACCAAATCAGA
CGATTTACATCAATAATTTGAACGAAAAAATGAAAAAAGAAGGATGCCTG
GGTTCAAAGATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCTTCGTT
GAATTCGACACACCATCACAAGCACAAGTGGCAAAAGATCAGTTAGACGG
CTTCAAAATTACACCTGAAAAAGCGATGGTCATTAAATATGCTAAGCAGT
GAAAACTAATGGCCATACACCAGCACCGCCAGCACCGAATGAGACTAATG
GGGATAAAACAGATGAAATACCAACTAATAATATCTTATTCTTATCAAAT
CTTCCCGATGAAACGACACAAATGATGTTATCTATGTTGTTTCAAGACAC
GTAAAAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTT
AAAGAGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGAATG
ATGGAACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAA
GATCTAAAGAAACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCAT
TGATATAGTTGCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTG
TGTTCCGTGAAATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGT
TTTATATTCTTCGATAAAGCAATGATGGATATTCCACCAAATCAGACGAT
TTACATCAATAATTTGAACGAAAAAATGAAAAAAGAAGGATGCCTGGGTT
CAAAGATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCTTCGTTGAAT
TCGACACACCATCACAAGCACAAGTGGCAAAAGATCAGTTAGACGGCTTC
AAAATTACACCTGAAAAAGCGATGGTCATTAAATATGCTAAGCAGTGAAA
ACTAATGGCCATACACCAGCACCGCCAGCACCGAATGAGACTAATGGGGA
TAAAACAGATGAAATACCAACTAATAATATCTTATTCTTATCAAATCTTC
CCGATGAAACGACACAAATGATGTTATCTATGTTGTTTCAAGACACGTAA
AAGACAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTTAAAG
AGGATAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGG
AACGTATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAAGATC
TAAAGAAACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGAT
ATAGTTGCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTT
CCGTGAAATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTA
TATTCTTCGATAAAGCAATGATGGATATTCCACCAAATCAGACGATTTAC
ATCAATAATTTGAACGAAAAAATGAAAAAAGAAGGATGCCTGGGTTCAAA
GATGTACGGTTAGTAGATGGGAGGGCAGACATTGGCTTCGTTGAATTCGA
CACACCATCACAAGCACAAGTGGCAAAAGATCAGTTAGACGGCTTCAAAA
TTACACCTGAAAAAGCGATGGTCATTAAATATGCTAAGCAGTGAAAACTA
ATGGCCATACACCAGCACCGCCAGCACCGAATGAGACTAATGGGGATAAA
ACAGATGAAATACCAACTAATAATATCTTATTCTTATCAAATCTTCCCGA
TGAAACGACACAAATGATGTTATCTATGTTGTTTCAAGACACGTAAAAGA
CAACTGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTTAAAGAGGA
TAACTTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGGAACG
TATTGGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAAGATCTAAA
GAAACATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGATATAG
TTGCAATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCCGT
GAAATTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATATT
CTTCGATAAAGCAATGATGGATATTCCACCAAATCAGACGATTTACATCA
ATAATTTGAACGAAAAAATGAAAAAAGAAGGATGCCTGGGTTCAAAGATG
TACGGTTAGTAGATGGGAGGGCAGACATTGGCTTCGTTGAATTCGACACA
CCATCACAAGCACAAGTGGCAAAAGATCAGTTAGACGGCTTCAAAATTAC
ACCTGAAAAAGCGATGGTCATTAAATATGCTAAGCAGTGAAAACTAATGG
CCATACACCAGCACCGCCAGCACCGAATGAGACTAATGGGGATAAAACAG
ATGAAATACCAACTAATAATATCTTATTCTTATCAAATCTTCCCGATGAA
ACGACACAAATGATGTTATCTATGTTGTTTCAAGACACGTAAAAGACAAC
TGGCAGCCAAACAAGCTAGAAGAGAAACAGTACCAGTTAAAGAGGATAAC
TTTTGCGAGAAGTAAATCAGATGTCTTTGCAAAGAATGATGGAACGTATT
GGACAAAAGGGAAAGCTGAAAAACGAAAAGCAGAAGAAGATCTAAAGAAA
CATCTTTATACTCTGTTTTCACAGTTTGGACCTGTCATTGATATAGTTGC
AATGAAAACACCAAAGATGAGGGGTCAGGCTTTTGTTGTGTTCCGTGAAA
TTCCCATGGCAACAAATGCATTGAGGAGCATGCAAGGTTTTATATTCTTC
GATAAAGCAATGATGGATATTCCACCAAATCAGACGATTTACATCAATAA
TTTGAACGAAAAAATGAAAAAAGAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_045038	XLOC_045038	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00072577-protein	TCONS_00072577-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:488243..490971 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
35.8751	38.2602	79.3575	85.9359	26.43	16.9779	12.0641	8.22592	27.49	25.7951	22.3835	18.5426	9.16993	11.4734	16.0365	15.4913	29.1716	22.1326	5.40016	7.29191	15.5087	14.9356	28.6091	22.2903	0.0150491	4.28973	8.36943	5.97174	17.4021	20.3499

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding

Blast

[Close]

BLAST of TCONS_00072577 vs. Swiss-Prot (Human)
Match: RU2B (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 3.305e-70
Identity = 122/233 (52.36%), Postives = 158/233 (67.81%), Query Frame = 2

Query:   62 MDIPPNQTIYINNLNEKMKKEDLKKHLYTLFSQFGPVIDIVAMKTPKMRGQAFVVFREIPMATNALRSMQGFIFFDKAMRITFARSKSDVFAKNDGTYWTKGXXXXXXXXXXXXXXXXXXXXXXETVPVKETNGHTP--APPAPNETNGDKTDEIPTNNILFLSNLPDETTQMMLSMLFQEMPGFKDVRLVDGRADIGFVEFDTPSQAQVAKDQLDGFKITPEKAMVIKYAKQ 754
            MDI PN TIYINN+N+K+KKE+LK+ LY LFSQFG V+DIVA+KT KMRGQAFV+F+E+  +TNALR +QGF F+ K MRI +A++ SD+ +K  GT+           E+ ++++ A    +  T   K+    TP  A    N T   +  + P N ILFL+NLP+ET +MMLSMLF + PGFK+VRLV GR DI FVEF+   QA  A+D L GFKITP  AM I YAK+
Sbjct:    1 MDIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF--------ADKEKKKEKKKAKTVEQTATTTNKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225

The following BLAST results are available for this feature:

BLAST of TCONS_00072577 vs. Swiss-Prot (Human)

BLAST of TCONS_00072577 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RU2B	3.305e-70	52.36	U2 small nuclear ribonucleoprotein B'' OS=Homo sap...	[more]

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TCONS_00072577 (transcript) - C. hemisphaerica