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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072564 ID=TCONS_00072564|Name=TCONS_00072564|organism=Clytia hemisphaerica|type=transcript|length=269bp
CTGACAACGACAATGACGAAAATGTCTGAATGTTACTGTTGCATCTGTCG
ACCTCAAACCGGCAGAAATATCAGGAAACGGTGGTCAAGACTTTCCATCA
GGAATCGCGAACCGAGTGAAAGATGATTAGAAATGATGATAAGATTCAAA
ATCCGACAAGTGAAGATAACCATCGGTTTTACTAACCCAGGATTTAAACA
GGACGGAATTTGCAAATCATAGTTGATGTTATCAATGATGAGATTCACTC
CATTAACGTTGCAGATTCA Run BLAST on NCBI transcript from alignment at scaffold_8:280697..286787- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072564 ID=TCONS_00072564|Name=TCONS_00072564|organism=Clytia hemisphaerica|type=transcript|length=6091bp|location=Sequence derived from alignment at scaffold_8:280697..286787- (Clytia hemisphaerica)
CTGACAACGACAATGACGAAAATGTCTGAATGTTACTGTTGCATCTGTCG
ACCTCAAACCGGCAGAAATATCAGGAAACGGTAAATGTAAAAGACTTGAT
CATTACTTAAAAAAGTCCATTCAATTTATACGAGCACTAATTCTTGTTAT
ACTTGCTATTTTTGGACCTACCCCGGTGGGACGGAGGTCCTATAAATTAA
CCGTTGTATGTTCGTTCGTCCGTCCGTCCGTTTGTTCGTCTGTTACCAAC
TTTTCTCAGGATTGAATCATAGGAATCTTTTGATTTTTGGTACAAAGGTG
CAAAATGGTAGTGGCCAAAATGTGACGGAGCCCGATTTTCTCGAAAAGAA
AATTTAGGGGCAAATTTGGCCAAAAAACGGCCAAAAAAACGGGTTTTTTG
GACTTTGTGAAAATTGGATCATTAATTTTTCTGATTTTTTGCATGAAAGT
AGGGTACCATCATAGGTTAAAGATGGCTCGAGCAGATTTTTACAAAAAAT
TTTATTAGCTCAAAAAATGCATGTTTATCTATAAGAATCACTATTGATAA
ACAAATTGATAAATAAACATACCGTCCGTCCGTTACCAACTTTTCTCGAG
ATTGGCTCATTAGTTTATTCTGATTTTTTGCACAAAGATGTGTAACTATA
TAAACCCTCGAATGTGACGGAGCCGAAAAAAAATTTTGGGGAGCACATTT
TGGCCAAAAAACAGCTAAAAAACTGTTTTTTTGGATTTTGAAAAATTGGA
TCATTAATTTTTTTCTGATTTTTTTCATGAAATGTAAAACATGGCTCAAT
TTGAAAAAAAAATTGTAGGCTCAAAAAACGCATGTTAATCTATAAGAATC
ACTATTAATAAGCATACATCAATGTTCTTATAGTCCAATTACTCAATTTT
TTGATGAGATAGATGTTTTTTTGCTCACGAAGTCTTAAATATGAAAGGAT
ATTTCAAGAGCATGAAATTTTGGTATCTAAACGTTTTTTTTATAAGAAAC
AAACGATTAATTTTGATAGATCGATTTTAATAGATCGTCACTATTTGTGT
TCTGAATGATTGTTTGATGGTCACGTCACGTAGATATCAATTATAAAATA
TGTGTTAAATGCATAACCATGTAGGTCCATAAAAAGTATCACTCGTTTTA
AATGAAAATGTCACGGTGGAGGGCAATGGTTTGAGTTTTCTAGAAACACT
TATTATTTTTTTATTGGCTGAAAAACGAATCTTCATCTATAAGAATCACT
ATTTATAAGCATAGATCAGGGATATGTATGGTGGCCTACAGAGACATTAG
CGATATAATGAGTTAGCTGATCGAAATACAGTAAAAGCTTAATTAAATTT
AAATTTACTTTCATTTTAATTTAAATTTACTTTCATTTTAATTTAATTTC
AATTTCATTTTAATTTAATTTCATTTCAATTTCATTTTAATTTCATTTCA
ATTTCGTTTTAATTACATTTTAATTTCATTTCATTTTTATTTCAATTTTA
TTTCAATTTCATTTTAATTTCATTTCAAACCTATTTTAATTTCATTTTAA
TTTCATTTTCATTTCAATTTCATTTCAATTTCATTTTAATTTCATTTCAA
TTTCATTTCAATTTCATTTCATTTAAATTCTATTTTAATTTCATTTTAAT
TTCATTTTAATTTCATTTCAATTCTATTTTAATTTCAATTTCATTTTAAT
TTAATTTCATTTTAATTTCAATTTCATTTCAATTTCATTTTAATTTCATT
TCAATTTCATTTCAATTTCATTTCAATTTCATTTCATTTAAATTATATTT
TAATTTCATTTCAATTTCATTTTAATTTCATTTCAATTCTATTTTAACGG
TGACGGAGCCCGATTTAAAAAATTTTTCTGGCCAAAAATGCCGGAAATAT
GCCGGAAAAACGGGTTTTTTGGCATTTTCTCGAGATTTTATTATTAGTTT
TTCTGAATTTTTGCTCTAAGATGCGTATTATCAATGCCCAAAACATGGCC
GAGTCCAATTTTTGAGGAAAATTTTATTCCGGCCGAAAATGCCGGAAACA
TTCTGGAACTCGCCGTTTTTCTGGATTTTCATTGGACTTTTTCCTTATAA
TTGTTTATTTTTTCATTCAAAAACATCATTTACAACAATGCCCACCATTA
AGCATGTTTCAATTTCAATAAAATTGATTTTTGAAGCCGGAACTATTTAA
AAATCGCTGGAACAACCTATTTTCGCCGGAAAGACAATAATTCTTGAATT
TCTCGAGCTGTACTTTATATTTTTTTTATGAAATTTTGCACAGTGATGCA
TAATGACAATACCTAAAATGTGACGGAGCCCGATTTAAAAACATTGACAT
TTTCTCGAATTTTCAAATTTAGTTTTTTCTGATTTCTTGCCGAAATATGC
GTATTCGCAACGCTCAAAACATGGCTAAAATCAATTTTTGAGAAAAAAAA
TTTTCCGGTTGAAAATGCCGGAAATCGCCGTGTTTGTAGATTTTCATTGG
ATTTTTTCCTTAAATATTTCTATGATTTTTACACAAAAACATTATTGATA
ACAATGCTCACTATCAAGCATGATTCAATTGTCAATAAAACTGATTTTTG
CGACCAGAACTTTCTATTTATTTTTTCTTTACGACCCTTCTCTCCCCCCA
TCAACAATCAATGATGAATTTATTTCGTTATGCATTTTCGCTAAACGCTA
TATTTTCTGACTGATTTTTTTAATTTTTCTCCTCGCATTGCTATCTAACT
TTCATCATCAGGTAGGTCCATTCAGCATCTAGCTTGTTGGCTAATATTTC
TGGCAATAAGTGCTTAAAACAATAATGATATGATTATACACTATCCCAAA
GGCTTTTGATGTGTTAAACAACACTCTACTCGGTGGGTGCGACGCCGGGT
GACGGCTAGTATAATTACTAAAATCTAACTGAAGTCCACCTAACGAAAAT
TAAAGGTTGTCTAGCCAATTTGGTTATTGCATTGTTATTCTCAGTCCGGT
TCAGCTTGGATATACTCTGTGATTCGTAGGTTTGAATCTACCTATCTCAG
GAATAATCCTGTAAATACTGGCAATTACATAAATGGAATTTTGATATTCT
TAAGGACTTGTGCTGCCTGATGTTATCTGGGATAAAGCACTTTAATCTTT
TGAGGACATCAATAATTATTTTATCATTTGTAAACGAAATATTTATCCGC
ATATTTGCGGCTCTTGTTTATTTTTCAAAAGTCTTTTTAAGTTTTAATTC
CGATTTCGGATTATTTTCGGGAAACAGGATTTCGGAATTACTTAGCGCGC
GAAAATAATTTTTTCTTAGTAAGATAAAATAGGACGAGAAAAACACATAA
CATAAAAAGACGGGTATAATTAATAATAAGAAAAAAAGAAAAAAGATTCT
TTTTTGCGTCATATTCAGTAGTTAATAAAAGATACTTTGGCATTGTAAAT
AAAGAAAGAGAACTAATTATAGAGAAAGTGAGTATTAAAGAAATTACTTT
TCTTTGAATAATGTTAAGTTGTATACTACTTGTAGAAATTCTNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNATACTACTTGTAGAAATTCTTCT
ATTTGGGTCTTTTATTTTATTGTCATGACAAGACACCCGTCGAGTGTTTT
TTATAATCTGATATCTCTGATATAACACAGGGAGTAAGGACCTTTCTCGC
AATTCTATTTCATAATACTGCGCATGCGTAATTTTCAACTGGTAGTGGAT
ATTTAATGGTTAGAACCAAGTCAAATAATCAGGGCCGGTACTGTGGACGG
CCAAATTCACTTTATAAATGTGACGTTCTTTAGTGACGTATTGTGACGTT
CTTTAGTGACGTATGTGTCGCTTATTGGGTCACTATCAGTTAGGGTCAGG
GTTGGACTCGAGAGTCACAACTGAGTGCCCTGGACCCATTTAGAGTCACT
TTAGGGTCAATTGGACCCACTGACAAAATTGAAAAACTTCGTTTTTGTAA
GATTTTAGATTGCTGCGAATAAGGTCCTTTCTTCCCCTCATAAACTAGAC
AGGTTCGAGCTGTGAGTCCAATTTTGGACTCAGATTTTTAACAGTTGAAC
AAGCGCAGGACTCACTCACTGAATAAAAATGAGTAAACGACTGGACAGTA
AAAAATCGCGTTTTTTTCTGAGGCAGTTTGAAAAGAGAAACTAAAACAAG
CTTTCATTGGCTAATTCATCAACTGTCATTTTGAGGAGCGAAATTCAAAT
TCAATGCAGCAATGGTATTAATTTGTTTCACCGACTTCTGCTTTGGACGG
ATCCCACTATGCACCACTACTTTTTCGTCTGAACGTTTCAAGCAAATAGA
TACGCCCTTTCAAGCTTTTCAGATTTTAACAAAGCTAGATCTCTTATTTG
TACTTCTAAGCCTTCTAAGCCTTTTGGGCTGACTTTCCAGCGCAGCTGGT
TTATTTTGTATTTTGACCAGTTATGTCTTATGTGTTTCATTGTTTCAATG
TTTCAATGTTCATTGATTAGTTTGATAACCAGGTATGTCCATAAAAGTAT
CACTTGTTTTACCAACACATCAAATCTACCAATTATATACGGTTGAATAA
TACAGAGCACTATATGTTATGTGAAAATATTTTAAAAAATTAAAAAGTCA
GAACCTAAGAATTTCAGAGCTTTTTTAAATGTAAATTATCAAATGATTTT
TCCCAAAAAGTTGAGAATATCCATGATGAAATGAAAAAAAGACTGAAAAT
GCAGATTTTCAATATAAATTACTTGGGCCAAAATTCGGTATTTTTTCAAA
ATTGTTTCGTTAGATTTTGTTGAGCTATTTTTGCATGAAAAAGGGATGGT
TTGAAATTTAGCATGGTTTGATTTCCAAAATATTGTTTTTTGTATGTGGG
AGAAAAAAGGGTTCTTTATGGTTTCAAAGTTACACATCTCTGTGCTATGC
TTTCACCAGGTAGGTCCATGTAGTATGCCGCTTGTCATTCCATGGGACAC
CCCTGTCTCATAGCCCCGGTGGAACTTTTTCACACATCCATCGACATCAA
ATCGGGATTGACATTTTTTTGTCTCAAGTTTAAATATCCATGACGGTTTT
TGATTGCAATCTTTTATGTCGAATTTCGAATGGGGATGAAGTCAAAGCCA
GTGAGACTGAAATTACAGAGTATTTCTCCCATCGGAGACGAAATTTTGGT
CAAATTTTCCAGTGGGCTGGGGTTTGAACGACACAGGGGTGTGACTCAGG
GGTGTCTTTGGTCACTTATAACAGGGGGCAACTACTAAGGACTCGCGACA
TCTTTTATGCAACTCAACCAAACTATTTCAAAAAGAAGGTATTTAAAGAG
TCTTTCGCCTAGGAAAACTTTTAGTGCTCAAAAACTTACGTCACAGGCGA
ATTCCCTTGACTCCAAAAATTTGACGAATTACTGTAGTTAATAAATCTTA
AAGCTATCTGCCAATCGAAAGCTCTCAAAAAAGATATAGAGGACTTTTCA
ACTCCAATAAATTGACAGTCAATGACGTCAAAACGTAACATTGATATTTA
GCCGTCCCACCAACCTTGATTTGTCATCGTTTTTATCAGCATCTTTTTCA
TACAGGTGGTCAAGACTTTCCATCAGGAATCGCGAACCGAGTGAAAGATG
ATTAGAAATGATGATAAGATTCAAAATCCGACAAGTGAAGATAACCATCG
GTTTTACTAACCCAGGATTTAAACAGGACGGAATTTGCAAATCATAGTTG
ATGTTATCAATGATGAGGTAAGCTCCCATTCATCGTTGTTCTGCTTTCTA
CTATTACAATATAGCTTCTTCTTAAAATAAGATTCGTTAATGTGGGCGAA
TTTTTTTTTCAATGATCTACTCCTCATTTTGATTTCTCACTCCCTTGGCA
CGTGTTTTACCCTGAACATTTACATGCAAAATGAAAACTCACTTCATGCA
AATGGCAGATTCATCCATGCAAATTGTAGCTTCATTCATCAGATTCACTC
CATGAACATTGCAGATTCACTCCATTAACGTTGCAGATTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072564-exon-scaffold_8-1575043694:286708..286787 | TCONS_00072564-exon-scaffold_8-1575043694:286708..286787 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1575043694:280971..281132 | TCONS_00072564-exon-scaffold_8-1575043694:280971..281132 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1575043694:280697..280723 | TCONS_00072564-exon-scaffold_8-1575043694:280697..280723 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1510915933:286708..286787 | TCONS_00072564-exon-scaffold_8-1510915933:286708..286787 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1510915933:280971..281132 | TCONS_00072564-exon-scaffold_8-1510915933:280971..281132 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1510915933:280697..280723 | TCONS_00072564-exon-scaffold_8-1510915933:280697..280723 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1491911889:286708..286787 | TCONS_00072564-exon-scaffold_8-1491911889:286708..286787 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1491911889:280971..281132 | TCONS_00072564-exon-scaffold_8-1491911889:280971..281132 | Clytia hemisphaerica | exon |
| TCONS_00072564-exon-scaffold_8-1491911889:280697..280723 | TCONS_00072564-exon-scaffold_8-1491911889:280697..280723 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:280697..286787 - |
Blast
The following BLAST results are available for this feature:
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