TCONS_00072555 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072555
Unique NameTCONS_00072555
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1431

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072555 ID=TCONS_00072555|Name=TCONS_00072555|organism=Clytia hemisphaerica|type=transcript|length=1431bp
ATTAAAATAGGTTTGGTAGTTTTGAATAACTTTGCCATCAAAATATCAAT
CAAAGTAACTTTCATTGCAGATTTATCATACATCAGGTTGGTTTTAAAGA
GCTTTTGTGTGATCTGCTTGTTGGTTATTGACTTTCAAAATAGCAAAGTA
CTTTGGTTAGGTGTTGGATTAGCATCTGAGAGCGATATGCAGCTACTTGG
ATTTCTATGTTTTGGCTTGGTTCTATTTGTCTTAGTGAGCTGTGAAGAAT
CAAAGACGCAAGAAAGAAATAATGTTCTCCTGAATCCGTTCCATAAAAAA
GATGGACCACCCCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCTC
CAAAGTTCTTCAAGATTGCAAAGGTCATGgaatttcaaagaactgcaggA
AGTATCGGGATTGTACAATCTGTTCATATGTACGAGTGAATAAATGGCAT
TGCAAGAAAGCTGTTTGTGAAAAACAACGAAGATATTTGAATAAGAAATA
GATTATTATATTTTATAGCTCAGTATATATCTCTATTTTGTAAATATACT
AATTGATCCGGCCTTAAACCTTTAAGAGTAGCTACAGTAATGAAAAGGGC
GAAACGGTAGGGGAAAAACAACCTGGCCTTCCTAAATCAGACGGCCCGAA
GGCacctaaaagaaagaggagagcTTTTTAatccaacgagctatgaacCA
TCTTTTACTCTTTCTAAATCACAGAACGAAggctttaaaattaaaaagtt
acaGCCGATAAAGGCCTACTGCCTTTGAAATTTCTGCTCtcgagttttga
aaaataaacaacaaagtTAGCAGTTGTAAAATAGCATGACCAGCAAAACC
CTTTCAAGAACTCTCCTTAGGCTCACAGCTTATTCCTTAAATAGTGATTA
AGTTTTGGATTATAGCGAACTCTATATCATCTACTCACACTTCCTTTTTC
TTCATGAATTTATCGTGTTAGGAAATCTACTTTCCAAACTTGAAGTATTT
TCAAATTCTTATCAAAACCCCAAATTGACTTAACCTAAGCTAAGTGTCCC
AAACGGAAAATCTATAATCTATTTGATATCAATAGGGGTTTGGTTGCAAG
CCTTCTCCCATTTGTTCAGGTTAATGACATTTATTCATCTATTTACTTAA
CTTGAAAATTTGTTAGATTATTGGATATTATTTAATCAAACTTAAGAACA
gcttttcaaattctgaaattttgtcTTTGACTATTAACAAAAATCCGTTT
TTGGGATTTGCTTTCAAAACTTCTTACCTGAAAGAAATTGTCAGATGGGT
CAATCGGTCAATCGCGTCAATCGTGACCAAGAAGCAGTCCACAAGGCGCC
TACTGGTAGTACTTTGTTACCGAAAGCACTGAGAAGTAATACATCTCATG
CAGTATCAAGTCAATTGAAGACATTCTGGAG
Run BLAST on NCBI

protein sequence of TCONS_00072555-protein

>TCONS_00072555-protein ID=TCONS_00072555-protein|Name=TCONS_00072555-protein|organism=Clytia hemisphaerica|type=polypeptide|length=166bp
IKIGLVVLNNFAIKISIKVTFIADLSYIRLVLKSFCVICLLVIDFQNSKV
LWLGVGLASESDMQLLGFLCFGLVLFVLVSCEESKTQERNNVLLNPFHKK
DGPPRKQNGCLATRHCSKVLQDCKGHGISKNCRKYRDCTICSYVRVNKWH
CKKAVCEKQRRYLNKK
Run BLAST on NCBI

transcript from alignment at scaffold_8:101806..105125-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072555 ID=TCONS_00072555|Name=TCONS_00072555|organism=Clytia hemisphaerica|type=transcript|length=3320bp|location=Sequence derived from alignment at scaffold_8:101806..105125- (Clytia hemisphaerica)
ATTAAAATAGGTTTGGTAGTTTTGAATAACTTTGCCATCAAAATATCAAT
CAAAGTAACTTTCATTGCAGATTTATCATACATCAGGTTGGTTTTAAAGA
GCTTTTGTGTGATCTGCTTGTTGGTTATTGACTTTCAAAATAGCAAAGTA
CTTTGGTTAGGTGTTGGATTAGCATCTGAGAGCGATATGCAGCTACTTGG
ATTTCTATGTTTTGGCTTGGTTCTATTTGTCTTAGTGAGCTGTAAGTATT
ATCATTTCTTTACAATTGGGGAATAAATTAACCCTATTTTACAAGGGGGC
ATCACCCTGGCACTATTTTGAAGACTCCATGAAAAACTTTCCCAAGCACA
TGAAAATTGACTTCAAACAAAATCTTATAACGTACATGCCTACCAAATCT
CTGTTCGAAGCAACCACCAGTTCGTTTGTTTTTTTTTACTTTGTTGCCAA
CATTAGTAATAAAACCCAATAACTTCAATTTTTTACATATTTCAGATTTA
ATTTAAAACTTTCAAAAAAATAATGACGTCATCTTCAGCATTCAGATTAT
AGTTCTACATACCGTTCATAAAATCAAAACAGAATTAAAACAACTCTTCT
ACATAATTTGCTTTCATTTTTTTTGAAGTACGGTTTTTCATCGGTTAGCT
GATAGGTGCTATTTAAATGATGACGTCTGTTTCGGTGACGAAAATGGACA
GTCACTGAATACGTCACTGGAATTTATCACGACTTTACAGTTTCTAGAGT
AAGAAGAACAACGTCATCAAATCATTTTTTTTTCCATAGGTGAAGAATCA
AAGACGCAAGAAAGAAATAATGTTCTCCTGAATCCGTTCCATAAAAAAGG
TAATAATTCTGGAATACAGCATATTTTTTATATCTCGGTTATACGAATTG
TAAGCCATGTTAATAGTATAAACAGAAAATTTATATGAACTAGGTAAACA
AAACAATAGCGCTTGGTTATATTAAATGCCCTTGACTTCCCACAATTTTC
AATTCTAAGAGCTAGATTTATACACCCCTGTGTCACAGATCCGCTGAGAT
CTCAGTCCCATTGGAAAATTTGTCAAAAATTTCGTCCCGGTGAGAAAATA
CCCTAGAATTTCAGCCCCACTAGGAAATTGACTTTGATTTCATCCTTAAT
CGAAATTCAATGTTTGCATATTGAAATTCAAAACCATCCCACTGGATTTT
TTAACCTTGAAACAATATAGAATTTCTATGGATTAAAAGTGGAATTTTTA
TCCCCAATGAGGAAAAAGTTCGACCGGGGCTGTGAGGCAGGGGTGTATTA
ATGACAGAGTCTCCAAAATCTTTTTGAGTATTTCTGCAAAATAATTTCCA
AAATAGTATCACGCATATTGCTTAAAATTTCATATTCTACAGATGGACCA
CCCCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCTCCAAAGTTCT
TCAAGATTGCAAAGGTCATGGAATTTCAAAGAACTGCAGGAAGTATCGGG
ATTGTACAATCTGTTCATATGTGCGAGTGAATNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNATAGCGCTTGGTTATATTAAATGCCCTTGACTTCCCACAATTTTCAA
TTCTAAGAGCTAGATTTATACACCCCTGTGTCACAGATCCGCTGAGATCT
CAGTCCCATTGGAAAATTTGTCAAAAATTTCGTCCCGGTGAGAAAATACC
CTAGAATTTCAGCCCCACTAGGAAATTGACTTTGATTTCATCCTTAATCG
AAATTCAATGTTTGCATATTGAAATTCAAAACCATCCCACTGGATTTTTT
AACCTTGAAACAATATAGAATTTCTATGGATTAAAAGTGGAATTTTTATC
CCCAATGAGGAAAAAGTTCGACCGGGGCTGTGAGGCAGGGGTGTATTAAT
GACAGAGTCTCCAAAATCTTTTTGAGTATTTCTGCAAAATAATTTCCAAA
ATAGTATCACGCATATTGCTTAAAATTTCATATTCTACAGATGGACCACC
CCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCTCCAAAGTTCTTC
AAGATTGCAAAGGTCATGGAATTTCAAAGAACTGCAGGAAGTATCGGGAT
TGTACAATCTGTTCATATGTACGAGTGAATAAATGGCATTGCAAGAAAGC
TGTTTGTGAAAAACAACGAAGATATTTGAATAAGAAATAGATTATTATAT
TTTATAGCTCAGTATATATCTCTATTTTGTAAATATACTAATTGATCCGG
CCTTAAACCTTTAAGAGTAGCTACAGTAATGAAAAGGGCGAAACGGTAGG
GGAAAAACAACCTGGCCTTCCTAAATCAGACGGCCCGAAGGCACCTAAAA
GAAAGAGGAGAGCTTTTTAATCCAACGAGCTATGAACCATCTTTTACTCT
TTCTAAATCACAGAACGAAGGCTTTAAAATTAAAAAGTTACAGCCGATAA
AGGCCTACTGCCTTTGAAATTTCTGCTCTCGAGTTTTGAAAAATAAACAA
CAAAGTTAGCAGTTGTAAAATAGCATGACCAGCAAAACCCTTTCAAGAAC
TCTCCTTAGGCTCACAGCTTATTCCTTAAATAGTGATTAAGTTTTGGATT
ATAGCGAACTCTATATCATCTACTCACACTTCCTTTTTCTTCATGAATTT
ATCGTGTTAGGAAATCTACTTTCCAAACTTGAAGTATTTTCAAATTCTTA
TCAAAACCCCAAATTGACTTAACCTAAGCTAAGTGTCCCAAACGGAAAAT
CTATAATCTATTTGATATCAATAGGGGTTTGGTTGCAAGCCTTCTCCCAT
TTGTTCAGGTTAATGACATTTATTCATCTATTTACTTAACTTGAAAATTT
GTTAGATTATTGGATATTATTTAATCAAACTTAAGAACAGCTTTTCAAAT
TCTGAAATTTTGTCTTTGACTATTAACAAAAATCCGTTTTTGGGATTTGC
TTTCAAAACTTCTTACCTGAAAGAAATTGTCAGATGGGTCAATCGGTCAA
TCGCGTCAATCGTGACCAAGAAGCAGTCCACAAGGCGCCTACTGGTAGTA
CTTTGTTACCGAAAGCACTGAGAAGTAATACATCTCATGCAGTATCAAGT
CAATTGAAGACATTCTGGAG

Coding sequence (CDS) from alignment at scaffold_8:101806..105125-

>TCONS_00072555 ID=TCONS_00072555|Name=TCONS_00072555|organism=Clytia hemisphaerica|type=CDS|length=1503bp|location=Sequence derived from alignment at scaffold_8:101806..105125- (Clytia hemisphaerica)
ATGGACCACCCCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCTCC
AAAGTTCTTCAAGATTGCAAAGGTCATGGAATTTCAAAGAACTGCAGGAA
GTATCGGGATTGTACAATCTGTTCATATGTACGAGTGAATAAATGGCATT
GCAAGAAAGCTGTTTGTGAAAAACAACGAAGATATTTGAATAAGAAATAG
GTGAAGAATCAAAGACGCAAGAAAGAAATAATGTTCTCCTGAATCCGTTC
CATAAAAAAGATTAAAATAGGTTTGGTAGTTTTGAATAACTTTGCCATCA
AAATATCAATCAAAGTAACTTTCATTGCAGATTTATCATACATCAGGTTG
GTTTTAAAGAGCTTTTGTGTGATCTGCTTGTTGGTTATTGACTTTCAAAA
TAGCAAAGTACTTTGGTTAGGTGTTGGATTAGCATCTGAGAGCGATATGC
AGCTACTTGGATTTCTATGTTTTGGCTTGGTTCTATTTGTCTTAGTGAGC
TATGGACCACCCCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCTC
CAAAGTTCTTCAAGATTGCAAAGGTCATGGAATTTCAAAGAACTGCAGGA
AGTATCGGGATTGTACAATCTGTTCATATGTACGAGTGAATAAATGGCAT
TGCAAGAAAGCTGTTTGTGAAAAACAACGAAGATATTTGAATAAGAAATA
GGTGAAGAATCAAAGACGCAAGAAAGAAATAATGTTCTCCTGAATCCGTT
CCATAAAAAAGATTAAAATAGGTTTGGTAGTTTTGAATAACTTTGCCATC
AAAATATCAATCAAAGTAACTTTCATTGCAGATTTATCATACATCAGGTT
GGTTTTAAAGAGCTTTTGTGTGATCTGCTTGTTGGTTATTGACTTTCAAA
ATAGCAAAGTACTTTGGTTAGGTGTTGGATTAGCATCTGAGAGCGATATG
CAGCTACTTGGATTTCTATGTTTTGGCTTGGTTCTATTTGTCTTAGTGAG
CTATGGACCACCCCGGAAGCAAAACGGTTGCCTAGCAACAAGACATTGCT
CCAAAGTTCTTCAAGATTGCAAAGGTCATGGAATTTCAAAGAACTGCAGG
AAGTATCGGGATTGTACAATCTGTTCATATGTACGAGTGAATAAATGGCA
TTGCAAGAAAGCTGTTTGTGAAAAACAACGAAGATATTTGAATAAGAAAT
AGGTGAAGAATCAAAGACGCAAGAAAGAAATAATGTTCTCCTGAATCCGT
TCCATAAAAAAGATTAAAATAGGTTTGGTAGTTTTGAATAACTTTGCCAT
CAAAATATCAATCAAAGTAACTTTCATTGCAGATTTATCATACATCAGGT
TGGTTTTAAAGAGCTTTTGTGTGATCTGCTTGTTGGTTATTGACTTTCAA
AATAGCAAAGTACTTTGGTTAGGTGTTGGATTAGCATCTGAGAGCGATAT
GCAGCTACTTGGATTTCTATGTTTTGGCTTGGTTCTATTTGTCTTAGTGA
GCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045026XLOC_045026Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072555-proteinTCONS_00072555-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072555-exon-scaffold_8-1575043694:104885..105125TCONS_00072555-exon-scaffold_8-1575043694:104885..105125Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1575043694:104277..104336TCONS_00072555-exon-scaffold_8-1575043694:104277..104336Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1575043694:101806..102935TCONS_00072555-exon-scaffold_8-1575043694:101806..102935Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1510915933:104885..105125TCONS_00072555-exon-scaffold_8-1510915933:104885..105125Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1510915933:104277..104336TCONS_00072555-exon-scaffold_8-1510915933:104277..104336Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1510915933:101806..102935TCONS_00072555-exon-scaffold_8-1510915933:101806..102935Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1491911889:104885..105125TCONS_00072555-exon-scaffold_8-1491911889:104885..105125Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1491911889:104277..104336TCONS_00072555-exon-scaffold_8-1491911889:104277..104336Clytia hemisphaericaexon
TCONS_00072555-exon-scaffold_8-1491911889:101806..102935TCONS_00072555-exon-scaffold_8-1491911889:101806..102935Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:101806..105125 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.037769	1.59483	1.49306	2.32959	1.3318	1.93902	2.40765	12.8701	12.5579	8.37213	9.39493	0.585341	0.436331	3.39084	2.83861	0.0280703	0.0410751	0	0	0	0.0679225	0	0.0424856	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072555 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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