|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072554 ID=TCONS_00072554|Name=TCONS_00072554|organism=Clytia hemisphaerica|type=transcript|length=1942bp
AATCAAACAATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAA
AAATATCGAACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACA
AGTGAATGAAGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTA
CCTATCATTCTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAG
TATAAAAGGATTTTAGTTCCAGGAAATGGCAATTCTTCACTCTGCGCTGA
GCTTGTTGAAGATTATCCGAAAAGTCAAATTATTGGTGAAGATTTCTCAC
CGTCTGTTATCCAATATATgtcagaaaaatacaatgagATATCAAATTTA
TCTTGGTTTGTTGGTGATATAAGAGATATCCAACTGCATGGAGCTTCGAA
CacagaaaatcttttgtatGACATGATCATTGAAAAAGGAGTAATAGACG
CTCTAGTGGCTGGTTCAAAATCACCTTATGCTTCATATTTAGATCCTCAA
TGTCTAATAGATGTCGAACAGACTCTATTGTCGATTCGTAAATCACTTCA
TCGAGAGGGTCGATTTCTATCGATAAGTTTTGCATCACCAATGATTCGAT
TACCCTTATTATCTggtgtttttgagattttggttcATAGTTACATAAGT
GAGATGAGTGGCTTTGAGTATTATGTGTATGAATGTATAAATTCAATCTG
TGACAATGATGTGGATTTTCGTAAAAATATggaaaacgaaattttgaatt
ctgATCCAGTTGATTTGCCAGAGACTGATCCTTTGGCTATTGGAGATGTA
TTTGCTTAATTTTCTTCTGGTAAAGAGTAACTTTCAATGAATGAACATCA
ACGCACATGCTTAACACgtaACCTAAATTATCACACTTCACTTTCAAGAA
TTACAAAGTTGGCTGGCTGATCGGTTGTCAGCTTtgaaaaaaagccttga
aattgaATGCTGGTTGGGACAAAAATTCACTTGATCTGGTTTAGgtattt
tattataattttacaTTTGGCTGGCTGATTTTATAGCGGAATCATTTCCA
GTTTGCAAATGCTGAGCATTACGAAATTAATAAACATTTTGACGACAGAA
ACGAGAAAGAATAGGATCCAACATTTGAAgtcattttccaaaaatctaat
AGGTCAATCAGAATATTAATTTGGGTCAAAAGGTTGATACGATAATATGA
TAAGTGTTTGAAGGTTAAGCTAACATCTACTAGGTGTTAAGATATTTTTT
CTTGACTAGAAACTTTTGGAATGCTCCTGAAATCTCAATTATTCTGTTGG
ACACGTCATGGTGGCTAATCATGACTCTTTCAGAAGGGAATTTATCTATT
CAACTCTGACATCTTAAAACCACTcttgaaaaattcatttaatCACATCT
TTCATTATACCTCCATGATAATTCCTTCCATATGAAACTCTACCATATGA
AACATGGATGGAGAGCCTTTTCAATCGCAACTCCAGGTCCTCTTGCATGA
TTTCAACtgtttttcttccatttctttttgGACGAGCTTTGTTAGTTCTC
CAAGATTTGATCCACTAAATTTTTGCACTTTCTTAGCAAAATTTGTATAT
CTCGGGACTTTCAGCTGCTTTCAGACATTTTCGGTGACTGAAGCTTTGAT
TTTGTCTTTCCAACAAATTTTTGCGTCATGTTCCATTGTATCTCCATGCT
GGTTTGTCTTTCAAAGGTGCTAGTGCATCATATTAGCACATTGATTTTGA
TTGACTTTTTAACTCCGATCGACCATACTAATTTTAATAATTGTTTGTTA
TGAAGAAAACATTAAGTATGTTGGGCTATAAGTTAAAAACTgtttacatt
cattaaattaattaaaaaggAATATATCACAGCTTCactcattttttgaa
tattttctattttcgctcatgaaaaatcacaaaaatttgcAG Run BLAST on NCBI transcript from alignment at scaffold_8:70693..72969- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072554 ID=TCONS_00072554|Name=TCONS_00072554|organism=Clytia hemisphaerica|type=transcript|length=2277bp|location=Sequence derived from alignment at scaffold_8:70693..72969- (Clytia hemisphaerica)
AATCAAACAATAAAACAATGATGGAGGCCAGTGATAGAGTTGATCGTCAA
AAATATCGAACACAAGAATACTGGGAAGAAAGATTTCAGCATGAGTCACA
AGTGAATGAAGATAATGAAAATTCAAATGGAGCACATGAATGGTTTTCTA
CCTATCATTCTTTTAGCCATATTGTCACTGAAATTTGTCCACCTGACAAG
TATAAAAGGATTTTAGGTAAGATTGAAGTTCTTGTGGATAAAAAACTCTG
TAACAAGCACCTTTATCCGTTCATTTTCATATTTCAAGAAGTTGACTTTA
GCAAATTTTAGTCCGTCAAAACTTTCATTTTGATAAAGTCTGCTTTGGCA
TCATGACAGTATTATCATTGTGTTACTTTTGTTACCTTTTCAGTTCCAGG
AAATGGCAATTCTTCACTCTGCGCTGAGCTTGTTGAAGATTATCCGAAAA
GTCAAATTATTGGTGAAGATTTCTCACCGTCTGTTATCCAATATATGTCA
GAAAAATACAATGAGATATCAAATTTATCTTGGTTTGTTGGTGATATAAG
AGATATCCAACTGCATGGAGCTTCGAACACAGAAAATCTTTTGTATGACA
TGATCATTGAAAAAGGAGTAATAGACGCTCTAGTGGCTGGTTCAAAATCA
CCTTATGCTTCATATTTAGATCCTCAATGTCTAATAGATGTCGAACAGAC
TCTATTGTCGATTCGTAAATCACTTCATCGAGAGGGTCGATTTCTATCGA
TAAGTTTTGCATCACCAATGATTCGATTACCCTTATTATCTGGTGTTTTT
GAGATTTTGGTTCATAGTTACATAAGTGAGATGAGTGGCTTTGAGTATTA
TGTGTATGAATGTATAAATTCAATCTGTGACAATGATGTGGATTTTCGTA
AAAATATGGAAAACGAAATTTTGAATTCTGATCCAGTTGATTTGCCAGAG
ACTGATCCTTTGGCTATTGGAGATGTATTTGCTTAATTTTCTTCTGGTAA
AGAGTAACTTTCAATGAATGAACATCAACGCACATGCTTAACACGTAAGA
CAAGTAATGACTTTTTATGTTTTTGTGCAGAAGATTTCGATGAAAGACAA
GATAAAATCACAGCAATCAATTGTCATGGGCTTGTATCTCTCATAGGTTA
TCGAGTTATCTGATATTCTTCTTAAATTTCAAAATTTCCTTTTCTTTTTC
AGGTAACCTAAATTATCACACTTCACTTTCAAGAATTACAAAGTTGGCTG
GCTGATCGGTTGTCAGCTTTGAAAAAAAGCCTTGAAATTGAATGCTGGTT
GGGACAAAAATTCACTTGATCTGGTTTAGGTATTTTATTATAATTTTACA
TTTGGCTGGCTGATTTTATAGCGGAATCATTTCCAGTTTGCAAATGCTGA
GCATTACGAAATTAATAAACATTTTGACGACAGAAACGAGAAAGAATAGG
ATCCAACATTTGAAGTCATTTTCCAAAAATCTAATAGGTCAATCAGAATA
TTAATTTGGGTCAAAAGGTTGATACGATAATATGATAAGTGTTTGAAGGT
TAAGCTAACATCTACTAGGTGTTAAGATATTTTTTCTTGACTAGAAACTT
TTGGAATGCTCCTGAAATCTCAATTATTCTGTTGGACACGTCATGGTGGC
TAATCATGACTCTTTCAGAAGGGAATTTATCTATTCAACTCTGACATCTT
AAAACCACTCTTGAAAAATTCATTTAATCACATCTTTCATTATACCTCCA
TGATAATTCCTTCCATATGAAACTCTACCATATGAAACATGGATGGAGAG
CCTTTTCAATCGCAACTCCAGGTCCTCTTGCATGATTTCAACTGTTTTTC
TTCCATTTCTTTTTGGACGAGCTTTGTTAGTTCTCCAAGATTTGATCCAC
TAAATTTTTGCACTTTCTTAGCAAAATTTGTATATCTCGGGACTTTCAGC
TGCTTTCAGACATTTTCGGTGACTGAAGCTTTGATTTTGTCTTTCCAACA
AATTTTTGCGTCATGTTCCATTGTATCTCCATGCTGGTTTGTCTTTCAAA
GGTGCTAGTGCATCATATTAGCACATTGATTTTGATTGACTTTTTAACTC
CGATCGACCATACTAATTTTAATAATTGTTTGTTATGAAGAAAACATTAA
GTATGTTGGGCTATAAGTTAAAAACTGTTTACATTCATTAAATTAATTAA
AAAGGAATATATCACAGCTTCACTCATTTTTTGAATATTTTCTATTTTCG
CTCATGAAAAATCACAAAAATTTGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072554-exon-scaffold_8-1575043694:72754..72969 | TCONS_00072554-exon-scaffold_8-1575043694:72754..72969 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1575043694:71926..72576 | TCONS_00072554-exon-scaffold_8-1575043694:71926..72576 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1575043694:70693..71767 | TCONS_00072554-exon-scaffold_8-1575043694:70693..71767 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1510915933:72754..72969 | TCONS_00072554-exon-scaffold_8-1510915933:72754..72969 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1510915933:71926..72576 | TCONS_00072554-exon-scaffold_8-1510915933:71926..72576 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1510915933:70693..71767 | TCONS_00072554-exon-scaffold_8-1510915933:70693..71767 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1491911889:72754..72969 | TCONS_00072554-exon-scaffold_8-1491911889:72754..72969 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1491911889:71926..72576 | TCONS_00072554-exon-scaffold_8-1491911889:71926..72576 | Clytia hemisphaerica | exon |
| TCONS_00072554-exon-scaffold_8-1491911889:70693..71767 | TCONS_00072554-exon-scaffold_8-1491911889:70693..71767 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_8 | supercontig | scaffold_8:70693..72969 - |
Blast
The following BLAST results are available for this feature:
|
