|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072531 ID=TCONS_00072531|Name=TCONS_00072531|organism=Clytia hemisphaerica|type=transcript|length=1619bp
aatttcttaagttgaaactttttgttaGTGGTTTAGGATAGAATGAACAC
AAAAATCTCCCATACCTGATATTgacatttttaaatattttcatttagaa
atataatataaatagaaataaaaatataagatCTTGACAAGGTCATGCAG
CTAAAGTGTGGTGTAAATGACCAAACAGTGTACTGGACATGTATTGTTAT
TTCATAACAAGTTTTCCAAAGAAGGTTAAACCATAAAACATTCATGAAAA
CCTAATGGTCATgagaatttgttgaaaaaacttttccatTTAGGTAGAAA
TTTGTACCATGATATATTACAAGTCAACGTTCATGGTGTAACATCATCAA
TTCTTTAGGTAAATCTAAGGTAGAAAATCTAAGAAATCTTTATGAAGTCA
AGCTAGCTGAACAATGGACAGAGAAGAGAGTTGATGGACACTGGTTGTAT
TAGTTTTACCCCTCGGTTTACAACACAATGATCAGGAACTTTTCCTcgct
ttttgaaaaagaaatgaaatttcagtgctAACATGGATGGTAAATGGGAT
ACTCATATAAACTTTGTAATTGTAATGGTTTGAGATAAGTGTCGTATAAA
ATGTGTTGATGGTAAAACTGAAACGAATTTTATCACTTGTGATGAAGCCA
AAGTGTTGCAGACTTCTACACAGATGTGTATCTGTCATGGTGAATTTTCA
AATAGTTCCAACTACTTTGGATGCACACAAATTTATTCCAAACATAATTT
TGGAACAGACGATGAACGTGAAACTCAGTGCCTTGAAGATGACATATGGT
TGAAGTATATATAAGAGGTAAAATATATCATCTATGTAAACCGGATTGAC
GAGATTCCTGTATCATAACAAGAACTTGTGATTGTTTTGGTGAATATGGA
TATGGAGAGTCATTCAAAATCGATGTTCTCTGATCAGTATCTCGAGACTT
GGAAAAACAAAGAATCTCTCATTATTTTCAAAGTGGCAGGTTTGGATATA
GCAAAATTGAATGCATTATTGCTATATCATCACGATGCGGATTGGTGGGT
CCTGGAtatatttgaaatgttattCTTTGAAAGATTTCTTCAACAACGAC
ATTGGATCTATAAATCTGTCCCATTTTACTTTGTTTACATCATATCCAGC
TTCTTCTCAAGCATTTTTCCTGACAAAGAATGAAATAATTTGGAATATCA
GGCATGACTATGAAAAAAGGCAGCTTTATTTGCTATAAAAACCATGTTCG
CGTGATGTCAATTCATTGGATTTCGTAATAAAATTCTAATTCTTTTTCTT
GCATTTTGTGCTTGACCAATATTACTCTAGATAGTTGATATTGTATTTCA
TCTGATCATGATTTTTAAACACTGATTTTGTTGCGAATgctcttaaaaca
aaagattgtcACATCTTGTTTTATAAAATACATGATTTTCGCTCCTTATA
TTTTACTGATTCTTAACAACCGATTTCATTTAATCACTCAATCTTTTTTG
CTGGGaatttaaaaatcattcaaatctgcaaaactTCAAATCAGCATACC
AATGAACAATCGATTAGCTTTTTAGTTCTTGTCaaaattatttatttgtt
tctttttaaagGGATTTTC Run BLAST on NCBI transcript from alignment at scaffold_79:59174..61066- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072531 ID=TCONS_00072531|Name=TCONS_00072531|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at scaffold_79:59174..61066- (Clytia hemisphaerica)
AATTTCTTAAGTTGAAACTTTTTGTTAGTGGTTTAGGATAGAATGAACAC
AAAAATCTCCCATACCTGATATTGACATTTTTAAATATTTTCATTTAGAA
ATATAATATAAATAGAAATAAAAATATAAGATCTTGACAAGGTCATGCAG
CTAAAGTGTGGTGTAAATGACCAAACAGTGTACTGGACATGTATTGTTAT
TTCATAACAAGTTTTCCAAAGAAGGTTAAACCATAAAACATTCATGAAAA
CCTAATGGTCATGAGAATTTGTTGAAAAAACTTTTCCATTTAGGTAGAAA
TTTGTACCATGATATATTACAAGTCAACGTTCATGGTGTAACATCATCAA
TTCTTTAGGTAAATCTAAGGTAGAAAATCTAAGAAATCTTTATGAAGTCA
AGCTAGCTGAACAATGGACAGAGAAGAGAGTTGATGGACACTGGTTGTAT
TAGTTTTACCCCTCGGTTTACAACACAATGATCAGGAACTTTTCCTCGCT
TTTTGAAAAAGAAATGAAATTTCAGTGCTAACATGGATGGTAAATGGGAT
ACTCATATAAACTTTGTAATTGTAATGGTTTGAGATAAGTGTCGTATAAA
ATGTGTTGATGGTAAAACTGAAACGAATTTTATCACTTGTGATGAAGCCA
AAGTGTTGCAGGTACCATATATTTGTAGTTGTCATTTTTTTCTAGTCCTC
AACATTGTGCTAAAAGATTTTTATCAAACTTTTTATTTACTTATGATGTT
TTTTAATCCAGGTTGGTCAGGGTAGTACACAAAGATAATGACAACCTGAG
GAAAGAAATCCCAGAAAAGATTTGTTTCTTTGGTGATAATGTAATCATTG
TTTATTTGACTGATGTTAACATGAAAAATTCTGCCAAAATTAATTTTAAG
ATTAATGTAGATGTACTAAATACTGTAACTTTTAGACTTCTACACAGATG
TGTATCTGTCATGGTGAATTTTCAAATAGTTCCAACTACTTTGGATGCAC
ACAAATTTATTCCAAACATAATTTTGGAACAGACGATGAACGTGAAACTC
AGTGCCTTGAAGATGACATATGGTTGAAGTATATATAAGAGGTAAAATAT
ATCATCTATGTAAACCGGATTGACGAGATTCCTGTATCATAACAAGAACT
TGTGATTGTTTTGGTGAATATGGATATGGAGAGTCATTCAAAATCGATGT
TCTCTGATCAGTATCTCGAGACTTGGAAAAACAAAGAATCTCTCATTATT
TTCAAAGTGGCAGGTTTGGATATAGCAAAATTGAATGCATTATTGCTATA
TCATCACGATGCGGATTGGTGGGTCCTGGATATATTTGAAATGTTATTCT
TTGAAAGATTTCTTCAACAACGACATTGGATCTATAAATCTGTCCCATTT
TACTTTGTTTACATCATATCCAGCTTCTTCTCAAGCATTTTTCCTGACAA
AGAATGAAATAATTTGGAATATCAGGCATGACTATGAAAAAAGGCAGCTT
TATTTGCTATAAAAACCATGTTCGCGTGATGTCAATTCATTGGATTTCGT
AATAAAATTCTAATTCTTTTTCTTGCATTTTGTGCTTGACCAATATTACT
CTAGATAGTTGATATTGTATTTCATCTGATCATGATTTTTAAACACTGAT
TTTGTTGCGAATGCTCTTAAAACAAAAGATTGTCACATCTTGTTTTATAA
AATACATGATTTTCGCTCCTTATATTTTACTGATTCTTAACAACCGATTT
CATTTAATCACTCAATCTTTTTTGCTGGGAATTTAAAAATCATTCAAATC
TGCAAAACTTCAAATCAGCATACCAATGAACAATCGATTAGCTTTTTAGT
TCTTGTCAAAATTATTTATTTGTTTCTTTTTAAAGGGATTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072531-exon-scaffold_79-1575043694:60406..61066 | TCONS_00072531-exon-scaffold_79-1575043694:60406..61066 | Clytia hemisphaerica | exon |
| TCONS_00072531-exon-scaffold_79-1575043694:59174..60131 | TCONS_00072531-exon-scaffold_79-1575043694:59174..60131 | Clytia hemisphaerica | exon |
| TCONS_00072531-exon-scaffold_79-1510915933:60406..61066 | TCONS_00072531-exon-scaffold_79-1510915933:60406..61066 | Clytia hemisphaerica | exon |
| TCONS_00072531-exon-scaffold_79-1510915933:59174..60131 | TCONS_00072531-exon-scaffold_79-1510915933:59174..60131 | Clytia hemisphaerica | exon |
| TCONS_00072531-exon-scaffold_79-1491911889:60406..61066 | TCONS_00072531-exon-scaffold_79-1491911889:60406..61066 | Clytia hemisphaerica | exon |
| TCONS_00072531-exon-scaffold_79-1491911889:59174..60131 | TCONS_00072531-exon-scaffold_79-1491911889:59174..60131 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:59174..61066 - |
Blast
The following BLAST results are available for this feature:
|
