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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072523 ID=TCONS_00072523|Name=TCONS_00072523|organism=Clytia hemisphaerica|type=transcript|length=652bp
ataaaacaacaacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTG
TTACTCGTCTCCTTCTTGGTCTACGCAGTTCATTGCGAAGAAGAGGAGGC
AAAAGCCTTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCCAC
AACAAGAAGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAGAA
ACAGATGACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAAGA
AGAAGAGCAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGATG
AAGAAAATGTCGAAGAACAAAGTGatgCTTACAGACCAAAAGTGAGAATC
ACTAAAGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTG
TGCAAGCTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCATCA
GAAGAAGGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACC
ACAGTTTGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCGATT
CCGACTCCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAA
CATCCAAGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAAATC
CA Run BLAST on NCBI protein sequence of TCONS_00072523-protein >TCONS_00072523-protein ID=TCONS_00072523-protein|Name=TCONS_00072523-protein|organism=Clytia hemisphaerica|type=polypeptide|length=216bp
KTTTTTNSKMKIWKALLLVSFLVYAVHCEEEEAKALDEVEQEDAPEASPQ
QEDEPMTSDEEESDEETDDEEESDEEGEETHEEEEQDEPQEQEDEEEQDE
ENVEEQSDAYRPKVRITKVFKGKGLFKNKKVSCASSLVNLGCKSSKKCIR
RRRYYKKRVCVRSLITTVCRQRITVTCKVCSRFRLRKCYLFGKKYLRCRT
SKRVYNKCRKTSSSKI Run BLAST on NCBI transcript from alignment at scaffold_79:40531..46385+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072523 ID=TCONS_00072523|Name=TCONS_00072523|organism=Clytia hemisphaerica|type=transcript|length=5855bp|location=Sequence derived from alignment at scaffold_79:40531..46385+ (Clytia hemisphaerica)
ataaaacaacaacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTG
TTACTCGTCTCCTTCTTGGTCTACGCAGTTCATTGTAAGTTCAATTATGC
TCAACACCTTTTCTTATTCATAAGAGTCttataattttcattcttttgcT
GGACTTCAGATGCTCAACATCTTTTCTACACCTTTATTCATCATGAGTCT
TTTAATTTGGGAGTCTTGTAGACTTGCTTGCCATCAGCTTTTGCTGGACT
TCAGAACAGAAAGAAGCAAAAAGATTGCAAGAAAtaaacgatcgaacatt
ttctttaaattctaggcgaagAAGAGGAGACAAAAGCCTTGGATGAAGTC
GAACAAGAAGACGCTCCAGAAGCCTCCCCACAACAAGAAGACGACGAGCC
AATGACCAGTGACGAAGAAACGAATGACGACGAACAAACGAATGACGAAG
AGGGAGAGGAGACTCATGAAGAAGAAGAGCAGGATGAACCACAAGAACAA
GAAGACGAAGAAGAACAAGATGAAGAAAATGTCGAAGAACAAAGTGGTAC
GTATTCAACAGAAATGCTAAATGTGAAATTCTCTCTCGAAAGAAGCGTTG
CAATCACGGATAAATATCTAGAATCTAAGAATCAAGCTAAAGACATATTG
TTTCTTTGATCAATNCAACAAAGTGGTACGTATTCAACAGAAATGCTAAA
TGTGAAATTCTCTCTCGAAATAAGCGTTGCAATCACGGATGAATATTTAG
AATCTAAGAATCTAAAAATCAAGCTAAAGACATTGTTTCTTTGATTAATT
ATGAGAAAATTGATTCCAAAGGAGATGACATCATTCACAATCTTTCCTTC
CTataactttttcttctttttttcagatgCTTACAGACCAAAAGTGAGAA
TCACTAAAGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGC
TGTGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
CCATTAATGAACCAAAGGAAATCCACTATGGACATTGTTGTCAACTGCAC
TAAGGAATGACTCCCTGCTATAATAAACGAAAGATTAATTGTTTTTGGTA
GATACTGACTCTATGAGTGCATTTTTTCGTCGAAAATAAGGCCCTTAAAG
ATGATATCTTACTCTTCGAAAATGATTATTTTCCTCAATATCAATTatac
aattttttgaattattccGACCACGGGATGGTTGGCCTAACATAAAATAG
TGAACATGACATGGTGTTGTCGTGGCTACAATAAGGAATGACTTTACATT
TTGTAAAAggtgaatttaaaaaattacaaatagtCTTCTTTGCCTTCTGT
ACTACGAAGAAAAGTTAGTACACTGGTACTAAAAATAGAGAATTTTATCA
TTTCTTGAATCTTTTTCAGAATGTTTCATTAatccaaaaaactttaaaat
taaaaaaaaagttccgCATTATTTTGCATTTAGTTAGCATCGCAAAAAAG
TGTCAATGAAAAACATGAACTTCatattgaaaaaattaacaCTTGAGAAA
ATTGGTTCCGAGCTTGAAAAGACCGAAACACGGTGGTCTCTGTGTCAAAA
TGTCCGTAAAAACTAAAGTACATGTTAACTCAAATAACCCTTCTCCAAAC
TAACCTTCTCTTTATTGGTACTCGTGTATGTCTGAGAATTTAATAACAAC
CCCTCCGAATACCATACCTCTCAAAAGTTGCAAGACAACCTAATCCAATT
AGGCAAAAGGCTGTTATTAAACTCAACTTATAAAGGGCTAGAGAGaagtc
aatttaaaaaaaagaagacgacATGGCAGTATATCTAAAATTCCATACAG
TAAGTATTGATTGACAGGAGATAAATGAAAAACTTAAACCATTGAAAACT
GTCCACGGGTAACAAGAGAGATGACTATCAACTTCCGCCTCGTTTTTATA
TGCAGAGTTTGACGAAGGCAATTAAAAAAGCGGTCTCGTTATAAAACCAA
TAAATTCTAgcattgtttttaaagaaattgcAAGTCATCCTGAAAAAAGA
GTGTGAGGCTCGGTAACAATGTTATCTTAACAAGGggaaagtttgaaaag
aaagacttATCAAGAAAGCATGTCAAACTCGGATGGGGGTACTAGGCTag
aaatatttgtcaaaattctGGGCGATCAATCTAAAAATTGggtcaacatt
ttcaaaaaacgtGACCCTTTGAGTTTATGGACTTTTaagttatgaaaaaa
acttcattttacTTCCACgtgaatttcataaaaataattgACTTGACTGC
ATACTTAGCCCACTTGTTGACCTTCTCACGCCATCTCAGTCACGTGCGTG
GCTGCCGTTGCAATGAGAAGCTGGTGTCTTCACTAGTGATATCTTTCCAT
CGTTTCGCCCGTCTACCTCTCCTCCTTATGCCCTAGAACtcacttttcaa
acattttcttaaaaggttctCCTCTGGGAATCTCACAACATGGCCGAACT
ATGACAATCACCTTTTCTTAATGACACGGGCAGTCGTTGTTTGAAGTTTT
GTTCTATTCAGAAATTGaatcaatgataaaaaattGACACACATCCTCAA
ATTTCTGAGCATAAGCTTATCAACCTGATAATGGTTAAAGAGAAATAGCG
ATAACAGCAAAATGGATGATTCATCGATTCAGTCTTAATCTGAGAAAAGG
CTgccaaaagttttttaaaagtctTCGTGACACACCCTTTTCAAAGCGAA
AAAAGCTGAATGTATCAAGTTTGATTGATTAATAATATGTAAAACCATTA
TCATCATTCGTGCTTCAAAAAAATACTGCATGTGAAGAAAATTAATTAAG
TAAAACCAAAACGACCATAATTAATAGCCGATAAAGTTTGGCTGAAAGTT
TCGGAGTAATTATCTTCCTCTCTCACTTCCTGGTCTGCAACAGTATAAAA
GAGCTGCAACATTTGGAAAAAGACATTCTCAAATTGAACTCGAGGataaa
acaaacaacaaacaaacaacaaaatgaagATTTGGAAAGCTTTGTTACTC
GTCTCCTTCTTGGTCTACGCAGTTCACTGTAAGTTCAATTATGCTCAACA
TCTTTTCTTATTCATAAGagtcttttaatttttattcttttgctggactt
cagaacagaaagaagcaaaaaaatcgCAAGAAATAAACgatcgaaaattt
tcttttaattctaGGCGAAGAAGAGGAGACAAAAGCCTTGGATGAAGTCG
AACAAGAAGACGCTCCAGAAGCCTCCCCACACCAACAAGAAGACGAGCCA
ATGACCAGTGACGAAGAAACGAATGACGAAGAAATGAACGACGAAGAAGA
GAGTGACGAAGAGGGAGAGGAGACTCATGAAGAAGAAGAGCAGGATGAAC
CACAAGAGCAAGAAGACGAAGAAGAACAAGATGAAGAAAATATCGAACAA
CAAAGTGGTACGTATTCAACAGAAATGCTAAATGTGAAATTCTCTCTCGA
AAGAAGCGTTGCAATCACGGATGAATATCTAGAATCTAAGAATCTNTGCA
AGAAATAACCGatcgaaaattttctttatattcTAGGCGAAGAAGAGGAG
GCAAAAGCCTTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCC
ACAACAAGAAGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAG
AAACAGATGACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAA
GAAGAAGAGCAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGA
TGAAGAAAATGTCGAAGAACAAAGTGGTACGTATTCAACAGAAATGCTAA
ATGTGAAATTCTCTCTCGAAAGAAGCGTTGCAATCACGGATGAATATCTA
GAATCTGAGAATCTAAAAATCAAGCTAAAGACATTGTTTCTTTGATCAAT
TATGAGAAAATTGATTCCAAAGGAGATGACATCATTCACAATCTTTCCTT
CCTataactttttcttctttttttcagatgCTTACAGACCAAAAGTGAGA
ATCACTAAAGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAG
CTGTGCAAGCTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCA
TCAGAAGAAGGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATC
ACCACAGTTTGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCG
ATTCCGACTCCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCC
GAACATCCAAGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAA
ATCCA Coding sequence (CDS) from alignment at scaffold_79:40531..46385+ >TCONS_00072523 ID=TCONS_00072523|Name=TCONS_00072523|organism=Clytia hemisphaerica|type=CDS|length=1944bp|location=Sequence derived from alignment at scaffold_79:40531..46385+ (Clytia hemisphaerica)
aaaacaacaacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTGTT
ACTCGTCTCCTTCTTGGTCTACGCAGTTCATTGCGAAGAAGAGGAGGCAA
AAGCCTTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCCACAA
CAAGAAGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAGAAAC
AGATGACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAAGAAG
AAGAGCAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGATGAA
GAAAATGTCGAAGAACAAAGTGatgCTTACAGACCAAAAGTGAGAATCAC
TAAAGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTGTG
CAAGCTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCATCAGA
AGAAGGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACCAC
AGTTTGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCGATTCC
GACTCCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAACA
TCCAAGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAAATCaa
aacaacaacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTGTTAC
TCGTCTCCTTCTTGGTCTACGCAGTTCATTGCGAAGAAGAGGAGGCAAAA
GCCTTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCCACAACA
AGAAGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAGAAACAG
ATGACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAAGAAGAA
GAGCAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGATGAAGA
AAATGTCGAAGAACAAAGTGatgCTTACAGACCAAAAGTGAGAATCACTA
AAGTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTGTGCA
AGCTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCATCAGAAG
AAGGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACCACAG
TTTGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCGATTCCGA
CTCCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAACATC
CAAGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAAATCaaaa
caacaacaacaacaaacagcaAAATGAAGATTTGGAAAGCTTTGTTACTC
GTCTCCTTCTTGGTCTACGCAGTTCATTGCGAAGAAGAGGAGGCAAAAGC
CTTGGATGAAGTCGAACAAGAAGACGCTCCAGAAGCCTCCCCACAACAAG
AAGACGAGCCAATGACCAGTGACGAAGAAGAGAGTGACGAAGAAACAGAT
GACGAAGAAGAGAGTGACGAAGAGGGAGAGGAGACTCATGAAGAAGAAGA
GCAGGATGAACCACAAGAACAAGAAGACGAAGAAGAACAAGATGAAGAAA
ATGTCGAAGAACAAAGTGatgCTTACAGACCAAAAGTGAGAATCACTAAA
GTGTTCAAAGGAAAAGGACTCttcaaaaacaagaaagttAGCTGTGCAAG
CTCCCTTGTTAACCTCGGATGTAAATCATCAAAGAAATGCATCAGAAGAA
GGAGATACTACAAAAAACGAGTTTGCGTCAGATCTCTCATCACCACAGTT
TGCCGACAACGTATCACCGTAACATGCAAAGTATGCAGCCGATTCCGACT
CCGAAAATGTTATCTCTTCGGAAAGAAATACCTCAGATGCCGAACATCCA
AGAGAGTCTACAACAAATGCAGAAAAACCTCCAGCTCGAAAATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072523-exon-scaffold_79-1491911889:40531..40614 | TCONS_00072523-exon-scaffold_79-1491911889:40531..40614 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1510915933:40531..40614 | TCONS_00072523-exon-scaffold_79-1510915933:40531..40614 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1575043694:40531..40614 | TCONS_00072523-exon-scaffold_79-1575043694:40531..40614 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1491911889:45617..45856 | TCONS_00072523-exon-scaffold_79-1491911889:45617..45856 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1510915933:45617..45856 | TCONS_00072523-exon-scaffold_79-1510915933:45617..45856 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1575043694:45617..45856 | TCONS_00072523-exon-scaffold_79-1575043694:45617..45856 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1491911889:46058..46385 | TCONS_00072523-exon-scaffold_79-1491911889:46058..46385 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1510915933:46058..46385 | TCONS_00072523-exon-scaffold_79-1510915933:46058..46385 | Clytia hemisphaerica | exon |
| TCONS_00072523-exon-scaffold_79-1575043694:46058..46385 | TCONS_00072523-exon-scaffold_79-1575043694:46058..46385 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_79 | supercontig | scaffold_79:40531..46385 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR015943 | WD40/YVTN_repeat-like_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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