TCONS_00072520 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072520
Unique NameTCONS_00072520
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length709

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072520 ID=TCONS_00072520|Name=TCONS_00072520|organism=Clytia hemisphaerica|type=transcript|length=709bp
TGACGTCACTTTCCAATACGAAGGATATGTAGAGCCTCAAATCAAGCTTG
CTGCTCTTTGCGGGATGACCGATTCTACCGTCGTTTACCTGACACTAAAA
CCGACAACCAAGATTTTACCGACGTTACCCAAAACAACACCGTCAATACC
AAAATGTGTCATGCGCACAAGTTCACATATTGAAATGACATCACAAGATC
TACGAATTCCGATAACAGAGGATACATCGAGTTGGGTTATCGAGCTTGAA
TTTGATTCGAAATGGAACTATTTGAGTCTTCGGACAGAGTGTATGAAGCT
GAAATCTGACGGATTAACATTAATATGTGCAAGCACGGAGAATAATAGAC
GGTTGGCTAAAGGACGTACTTTTAGCTTTTCGTATTATTTCGGGTACAGT
CGTGGCCACTCTTCACCGAAATTAATAAGTGTTAAATTTAATAGTTATGG
CTGTAAACCATAAACTGTTTGAAATAAATTGACTTTCTTTGGTTAAGTAT
TAAATTCATTATTCtagcttttttttattttcacctcaGAATATTTATCC
ATTCCCGCTTTATTTACAAGAGCTATCttatacaccccttctcactgaAC
CACTGGGATCCCTTCCCCACTGTAAAAactgaccaaaatatcgtcaccgg
tggaaaattatcctccaatttttgtccccactgaaaataatcgaataaac
caatcctca
Run BLAST on NCBI

protein sequence of TCONS_00072520-protein

>TCONS_00072520-protein ID=TCONS_00072520-protein|Name=TCONS_00072520-protein|organism=Clytia hemisphaerica|type=polypeptide|length=153bp
DVTFQYEGYVEPQIKLAALCGMTDSTVVYLTLKPTTKILPTLPKTTPSIP
KCVMRTSSHIEMTSQDLRIPITEDTSSWVIELEFDSKWNYLSLRTECMKL
KSDGLTLICASTENNRRLAKGRTFSFSYYFGYSRGHSSPKLISVKFNSYG
CKP
Run BLAST on NCBI

transcript from alignment at scaffold_78:289246..289954

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072520 ID=TCONS_00072520|Name=TCONS_00072520|organism=Clytia hemisphaerica|type=transcript|length=709bp|location=Sequence derived from alignment at scaffold_78:289246..289954 (Clytia hemisphaerica)
tgaggattggtttattcgattattttcagtggggacaaaaattggaggat
aattttccaccggtgacgatattttggtcagtTTTTACAGTGGGGAAGGG
ATCCCAGTGGTtcagtgagaaggggtgtataaGATAGCTCTTGTAAATAA
AGCGGGAATGGATAAATATTCtgaggtgaaaataaaaaaaagctaGAATA
ATGAATTTAATACTTAACCAAAGAAAGTCAATTTATTTCAAACAGTTTAT
GGTTTACAGCCATAACTATTAAATTTAACACTTATTAATTTCGGTGAAGA
GTGGCCACGACTGTACCCGAAATAATACGAAAAGCTAAAAGTACGTCCTT
TAGCCAACCGTCTATTATTCTCCGTGCTTGCACATATTAATGTTAATCCG
TCAGATTTCAGCTTCATACACTCTGTCCGAAGACTCAAATAGTTCCATTT
CGAATCAAATTCAAGCTCGATAACCCAACTCGATGTATCCTCTGTTATCG
GAATTCGTAGATCTTGTGATGTCATTTCAATATGTGAACTTGTGCGCATG
ACACATTTTGGTATTGACGGTGTTGTTTTGGGTAACGTCGGTAAAATCTT
GGTTGTCGGTTTTAGTGTCAGGTAAACGACGGTAGAATCGGTCATCCCGC
AAAGAGCAGCAAGCTTGATTTGAGGCTCTACATATCCTTCGTATTGGAAA
GTGACGTCA

Coding sequence (CDS) from alignment at scaffold_78:289246..289954

>TCONS_00072520 ID=TCONS_00072520|Name=TCONS_00072520|organism=Clytia hemisphaerica|type=CDS|length=462bp|location=Sequence derived from alignment at scaffold_78:289246..289954 (Clytia hemisphaerica)
TTATGGTTTACAGCCATAACTATTAAATTTAACACTTATTAATTTCGGTG
AAGAGTGGCCACGACTGTACCCGAAATAATACGAAAAGCTAAAAGTACGT
CCTTTAGCCAACCGTCTATTATTCTCCGTGCTTGCACATATTAATGTTAA
TCCGTCAGATTTCAGCTTCATACACTCTGTCCGAAGACTCAAATAGTTCC
ATTTCGAATCAAATTCAAGCTCGATAACCCAACTCGATGTATCCTCTGTT
ATCGGAATTCGTAGATCTTGTGATGTCATTTCAATATGTGAACTTGTGCG
CATGACACATTTTGGTATTGACGGTGTTGTTTTGGGTAACGTCGGTAAAA
TCTTGGTTGTCGGTTTTAGTGTCAGGTAAACGACGGTAGAATCGGTCATC
CCGCAAAGAGCAGCAAGCTTGATTTGAGGCTCTACATATCCTTCGTATTG
GAAAGTGACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_045002XLOC_045002Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072520-proteinTCONS_00072520-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072520-exon-scaffold_78-1491911889:289246..289954TCONS_00072520-exon-scaffold_78-1491911889:289246..289954Clytia hemisphaericaexon
TCONS_00072520-exon-scaffold_78-1510915933:289246..289954TCONS_00072520-exon-scaffold_78-1510915933:289246..289954Clytia hemisphaericaexon
TCONS_00072520-exon-scaffold_78-1575043694:289246..289954TCONS_00072520-exon-scaffold_78-1575043694:289246..289954Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:289246..289954 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0718995	0	0.165763	0	0	0	0	0	0.430988	1.60862	0.0869915	0.406658	0.716169	1.44367	1.3476	2.54883	0.673718	0.419743	1.49259	3.18574	0.643573	0.252994	0.724223	0.586536	4.45624	3.83341	0	0.20767	5.43603	5.20063
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072520 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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