TCONS_00072517 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072517
Unique NameTCONS_00072517
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length247

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072517 ID=TCONS_00072517|Name=TCONS_00072517|organism=Clytia hemisphaerica|type=transcript|length=247bp
ATCGAAGTTCACTCACCACCGAGAGTTCATTACCGACCACCAAAAATTAT
TCAACGACCACGTATAACATATCAACAACCACCGAAGTTTCATTCACCAA
GCGAAATTGTTTATGAACCGTCGAAACTTCACCCGTTGTCAAAGATTACA
AACCTGTCTCCAAAGATATGCCATCTTCCGCTAAAGAAATCGCAAGAAAT
GATTCAACATTCATCTAGAATTATTCAAACCCCCTCCAAGGTTATCC
Run BLAST on NCBI

transcript from alignment at scaffold_78:148456..148702

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072517 ID=TCONS_00072517|Name=TCONS_00072517|organism=Clytia hemisphaerica|type=transcript|length=247bp|location=Sequence derived from alignment at scaffold_78:148456..148702 (Clytia hemisphaerica)
GGATAACCTTGGAGGGGGTTTGAATAATTCTAGATGAATGTTGAATCATT
TCTTGCGATTTCTTTAGCGGAAGATGGCATATCTTTGGAGACAGGTTTGT
AATCTTTGACAACGGGTGAAGTTTCGACGGTTCATAAACAATTTCGCTTG
GTGAATGAAACTTCGGTGGTTGTTGATATGTTATACGTGGTCGTTGAATA
ATTTTTGGTGGTCGGTAATGAACTCTCGGTGGTGAGTGAACTTCGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044999XLOC_044999Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072517-exon-scaffold_78-1491911889:148456..148702TCONS_00072517-exon-scaffold_78-1491911889:148456..148702Clytia hemisphaericaexon
TCONS_00072517-exon-scaffold_78-1510915933:148456..148702TCONS_00072517-exon-scaffold_78-1510915933:148456..148702Clytia hemisphaericaexon
TCONS_00072517-exon-scaffold_78-1575043694:148456..148702TCONS_00072517-exon-scaffold_78-1575043694:148456..148702Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:148456..148702 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.733445	0.391545	0.91033	0	3.21428	1.70272	1.83541	0	0	0	0	0	5.30679	2.75644	2.59441	0.776974	1.60751	1.9286	2.1565	4.24071	2.93792	1.86952	0	1.27811	6.65167	7.13134	1.17904	3.32363	4.53772	0.307642
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072517 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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