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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072514 ID=TCONS_00072514|Name=TCONS_00072514|organism=Clytia hemisphaerica|type=transcript|length=1001bp
AGAGAATtacagatacataatctcgctattgaCAGAGATAAATACGAGGG
GTTGTTGGTACATCCTCTAAGGATCCTTGGTTATTACTTTTCAAAtctat
tggaaaaatattttactccGTGGAGGCTTCCTTACTGTGAGCTTGTCGTG
CGCGTCGTGTGAACGGTTTCATAAGAAAAGATCTGAATGCAGGTATTTGT
TTGACATAAACCAACACATTAACACAAGAGTTCAGTACTACCAGACCGTC
AAAATAAGTCCTTACATAATTAAGTTTAAAATCGACCATTTGATCCACTA
GGATGACCACTCGGACTGGAACCATACAGACTACATAACATAAGATTAAG
CGCTTACAAACACTAAGTGCTCTTTTGTTTCGTTCTTTGACAGAGACATT
ATCAAGCACATCTCGCTGTTTGAAGGTTTTCGAAATCCGTACAAGATAAT
ACCTTAAGGAGATAATAGGTATAGATGTCTCGAAAATTAAATGGTAAAAC
GCTAGGGAGATAAGAGCATTCATATTCAAACTTTCAGCTGTTGATTTGAA
AAGTATAGCGATGAACCAAAATAAAGAATACATCCCTATAATGTGTTTAA
GTTTCAGGCGTGGTTTGAGGGGATAGACAATAGCTCGATAGCGGTCGTAC
GATAATGCGCATATAGTCCAACAAGACACGTGTACTGTAACGCAAATTCC
ATGTCCAAAGATTTCAACCATGTTTGGGAAAGTTGGTATTCCGACCATTG
GAAAACTAAATCGGATGAACTGTATAAGACAGACGATCAAATCAGTGATT
GCTAACAAGATTGACCAGACGTTGTAGGTTGAGATGGTTTTGAGTGATGA
CTTTTGGTTGTCTTGGCGACGAGCAAAAAAGTATATAATGAGACAGTTAC
CAATACTTCCAAAGAAAGTCAAAATTAATGCAATTATTCGTGAAATCTTC
ACATGAAGTTCTTCTTTTGTATTATCTGAAGTTACCAGAGTTGAATTCAG
A Run BLAST on NCBI protein sequence of TCONS_00072514-protein >TCONS_00072514-protein ID=TCONS_00072514-protein|Name=TCONS_00072514-protein|organism=Clytia hemisphaerica|type=polypeptide|length=295bp
LNSTLVTSDNTKEELHVKISRIIALILTFFGSIGNCLIIYFFARRQDNQK
SSLKTISTYNVWSILLAITDLIVCLIQFIRFSFPMVGIPTFPNMVEIFGH
GICVTVHVSCWTICALSYDRYRAIVYPLKPRLKLKHIIGMYSLFWFIAIL
FKSTAESLNMNALISLAFYHLIFETSIPIISLRYYLVRISKTFKQRDVLD
NVSVKERNKRALSVCKRLILCYVVCMVPVRVVILVDQMVDFKLNYVRTYF
DGLVVLNSCVNVLVYVKQIPAFRSFLMKPFTRRARQAHSKEASTE Run BLAST on NCBI transcript from alignment at scaffold_78:88638..89638 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00072514 ID=TCONS_00072514|Name=TCONS_00072514|organism=Clytia hemisphaerica|type=transcript|length=1001bp|location=Sequence derived from alignment at scaffold_78:88638..89638 (Clytia hemisphaerica)
TCTGAATTCAACTCTGGTAACTTCAGATAATACAAAAGAAGAACTTCATG
TGAAGATTTCACGAATAATTGCATTAATTTTGACTTTCTTTGGAAGTATT
GGTAACTGTCTCATTATATACTTTTTTGCTCGTCGCCAAGACAACCAAAA
GTCATCACTCAAAACCATCTCAACCTACAACGTCTGGTCAATCTTGTTAG
CAATCACTGATTTGATCGTCTGTCTTATACAGTTCATCCGATTTAGTTTT
CCAATGGTCGGAATACCAACTTTCCCAAACATGGTTGAAATCTTTGGACA
TGGAATTTGCGTTACAGTACACGTGTCTTGTTGGACTATATGCGCATTAT
CGTACGACCGCTATCGAGCTATTGTCTATCCCCTCAAACCACGCCTGAAA
CTTAAACACATTATAGGGATGTATTCTTTATTTTGGTTCATCGCTATACT
TTTCAAATCAACAGCTGAAAGTTTGAATATGAATGCTCTTATCTCCCTAG
CGTTTTACCATTTAATTTTCGAGACATCTATACCTATTATCTCCTTAAGG
TATTATCTTGTACGGATTTCGAAAACCTTCAAACAGCGAGATGTGCTTGA
TAATGTCTCTGTCAAAGAACGAAACAAAAGAGCACTTAGTGTTTGTAAGC
GCTTAATCTTATGTTATGTAGTCTGTATGGTTCCAGTCCGAGTGGTCATC
CTAGTGGATCAAATGGTCGATTTTAAACTTAATTATGTAAGGACTTATTT
TGACGGTCTGGTAGTACTGAACTCTTGTGTTAATGTGTTGGTTTATGTCA
AACAAATACCTGCATTCAGATCTTTTCTTATGAAACCGTTCACACGACGC
GCACGACAAGCTCACAGTAAGGAAGCCTCCACggagtaaaatatttttcc
aatagaTTTGAAAAGTAATAACCAAGGATCCTTAGAGGATGTACCAACAA
CCCCTCGTATTTATCTCTGtcaatagcgagattatgtatctgtaATTCTC
T Coding sequence (CDS) from alignment at scaffold_78:88638..89638 >TCONS_00072514 ID=TCONS_00072514|Name=TCONS_00072514|organism=Clytia hemisphaerica|type=CDS|length=888bp|location=Sequence derived from alignment at scaffold_78:88638..89638 (Clytia hemisphaerica)
CTGAATTCAACTCTGGTAACTTCAGATAATACAAAAGAAGAACTTCATGT
GAAGATTTCACGAATAATTGCATTAATTTTGACTTTCTTTGGAAGTATTG
GTAACTGTCTCATTATATACTTTTTTGCTCGTCGCCAAGACAACCAAAAG
TCATCACTCAAAACCATCTCAACCTACAACGTCTGGTCAATCTTGTTAGC
AATCACTGATTTGATCGTCTGTCTTATACAGTTCATCCGATTTAGTTTTC
CAATGGTCGGAATACCAACTTTCCCAAACATGGTTGAAATCTTTGGACAT
GGAATTTGCGTTACAGTACACGTGTCTTGTTGGACTATATGCGCATTATC
GTACGACCGCTATCGAGCTATTGTCTATCCCCTCAAACCACGCCTGAAAC
TTAAACACATTATAGGGATGTATTCTTTATTTTGGTTCATCGCTATACTT
TTCAAATCAACAGCTGAAAGTTTGAATATGAATGCTCTTATCTCCCTAGC
GTTTTACCATTTAATTTTCGAGACATCTATACCTATTATCTCCTTAAGGT
ATTATCTTGTACGGATTTCGAAAACCTTCAAACAGCGAGATGTGCTTGAT
AATGTCTCTGTCAAAGAACGAAACAAAAGAGCACTTAGTGTTTGTAAGCG
CTTAATCTTATGTTATGTAGTCTGTATGGTTCCAGTCCGAGTGGTCATCC
TAGTGGATCAAATGGTCGATTTTAAACTTAATTATGTAAGGACTTATTTT
GACGGTCTGGTAGTACTGAACTCTTGTGTTAATGTGTTGGTTTATGTCAA
ACAAATACCTGCATTCAGATCTTTTCTTATGAAACCGTTCACACGACGCG
CACGACAAGCTCACAGTAAGGAAGCCTCCACggagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00072514-exon-scaffold_78-1491911889:88638..89638 | TCONS_00072514-exon-scaffold_78-1491911889:88638..89638 | Clytia hemisphaerica | exon |
| TCONS_00072514-exon-scaffold_78-1510915933:88638..89638 | TCONS_00072514-exon-scaffold_78-1510915933:88638..89638 | Clytia hemisphaerica | exon |
| TCONS_00072514-exon-scaffold_78-1575043694:88638..89638 | TCONS_00072514-exon-scaffold_78-1575043694:88638..89638 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_78 | supercontig | scaffold_78:88638..89638 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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