TCONS_00072513 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072513
Unique NameTCONS_00072513
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length582

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072513 ID=TCONS_00072513|Name=TCONS_00072513|organism=Clytia hemisphaerica|type=transcript|length=582bp
ctattattttCAGGAAATAATATCTATTTTACAAACTCGCTAAAAACTAC
ATAAATTATAGCATTTTACCCAATCACAACACAATTTTTTCGTGCAACCA
AAGCTATAAGCTAACACGTTAAAAACGTCTATTAATTTTCATTACATATT
AGAATAGTCGTAACTTTCCAGGTACTAATATATGATTTGATCTCCGTTCG
GCGAAATAACCCCTGCGATAATATAATCATAATCAAATGTTTCTCGCCCC
ATGTAAAACTTTTCGTTGAAAGATTTGTTCAATTTTTCCGCTTTTGATTA
AAGCATATATGTAAAAGGTGCATTGGGCTCTTCTAGAAAATGTggtgggt
ggaggatatagtgtccggaaggtagtgaaaattctacaaaatttgccttg
tccgggggtaaacttgctctgtttgggggtaattttgctaTGTTTGTTTG
TCCATTGGGTCATCaaatgcttgtccaggggttaGACCTGCGTTTCCGGg
aggtcaaaagtcacaatgtttGGCGGgtgaatttcaaaagttttcctcCA
CCACCCccaggcgaaaataaaaaaaattagtg
Run BLAST on NCBI

transcript from alignment at scaffold_78:86978..87559

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072513 ID=TCONS_00072513|Name=TCONS_00072513|organism=Clytia hemisphaerica|type=transcript|length=582bp|location=Sequence derived from alignment at scaffold_78:86978..87559 (Clytia hemisphaerica)
cactaattttttttattttcgcctggGGGTGGTGgaggaaaacttttgaa
attcacCCGCCaaacattgtgacttttgacctcCCGGAAACGCAGGTCta
acccctggacaagcatttGATGACCCAATGGACAAACAAACAtagcaaaa
ttacccccaaacagagcaagtttacccccggacaaggcaaattttgtaga
attttcactaccttccggacactatatcctccacccaccACATTTTCTAG
AAGAGCCCAATGCACCTTTTACATATATGCTTTAATCAAAAGCGGAAAAA
TTGAACAAATCTTTCAACGAAAAGTTTTACATGGGGCGAGAAACATTTGA
TTATGATTATATTATCGCAGGGGTTATTTCGCCGAACGGAGATCAAATCA
TATATTAGTACCTGGAAAGTTACGACTATTCTAATATGTAATGAAAATTA
ATAGACGTTTTTAACGTGTTAGCTTATAGCTTTGGTTGCACGAAAAAATT
GTGTTGTGATTGGGTAAAATGCTATAATTTATGTAGTTTTTAGCGAGTTT
GTAAAATAGATATTATTTCCTGaaaataatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044995XLOC_044995Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072513-exon-scaffold_78-1491911889:86978..87559TCONS_00072513-exon-scaffold_78-1491911889:86978..87559Clytia hemisphaericaexon
TCONS_00072513-exon-scaffold_78-1510915933:86978..87559TCONS_00072513-exon-scaffold_78-1510915933:86978..87559Clytia hemisphaericaexon
TCONS_00072513-exon-scaffold_78-1575043694:86978..87559TCONS_00072513-exon-scaffold_78-1575043694:86978..87559Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:86978..87559 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0927517	0.120432	0.227693	0.513069	1.01359	0.254784	0.465833	0.160302	0	0	0.0650166	2.21402	2.59625	0.324055	0.46718	0.0714022	0.29274	1.81996	1.48124	0.183924	0	0.109057	0	0.408481	0.572343	0.260842	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072513 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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