TCONS_00072504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072504
Unique NameTCONS_00072504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length595

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072504 ID=TCONS_00072504|Name=TCONS_00072504|organism=Clytia hemisphaerica|type=transcript|length=595bp
CATCAGTTCTGAGAATGGATTCTATTTCTATTATTCACTTCTCGATAATG
ACGTCACTAACGAAACGTTCTATGAGCTGATGACACCTTCTATTCCTACA
GAAAGAGCGAGTGTTCGTATTTTCACAACTTTTCGAAGATTGGATGTTTA
TCTTAAACGAAAACAAACACTAAAGGTTTTCTTTTGTTGCGGAGACGATA
CGTTAGGAGAGGCATGGATCCCTCTTGATAAATTAAGTGACACAAATAAT
AACAATCTCTTACCCTCTATGACCAATGGCATGTTCCCATTGCGCAGTTC
AAAGAATGATCATCGGTCATTGGCGTGCGTGGGCGTCAGTGTGGTCCTGA
GGCGTGAAGATCAACCGGCACCCGTTGTTGCGACGGACCCAGGGTTGAGC
CCGGTTGAAAAGTTGGCTGATAAAAAGGCCGTATCACCAGACACCATTAC
ACCCACCGCCTCTCCACGTTTGGTGCACTCACCGCCACCACCGTCTTCCC
CGCCCCAACAGCGAACgccaaagaaaaatcaaaatcaaaattccagAGTA
AAAACAAGGCAATCACCAGAGAAGTCGAAGAATAGAAAGGAGANN
Run BLAST on NCBI

transcript from alignment at scaffold_78:116745..118932-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072504 ID=TCONS_00072504|Name=TCONS_00072504|organism=Clytia hemisphaerica|type=transcript|length=2188bp|location=Sequence derived from alignment at scaffold_78:116745..118932- (Clytia hemisphaerica)
CATCAGTTCTGAGAATGGATTCTATTTCTATTATTCACTTCTCGATAATG
ACGTCACTAACGAAACGTTCTATGAGCTGATGACACCTTCTATTCCTACA
GAAAGAGCGAGTGTTCGTATTTTCACAACTTTTCGAAGATTGGATGTTTA
TCTTAAACGAAAACAAACACTAAAGGTAATTAGACAAATATTCAATCACT
TCTTCCATACATTAACAAGCTCTACGGGAGTACATTACATAAAGAGCACT
TTTGATTGTGCAGAGAATAACTTTTGTAAATAATTAAAATGCTTGTTTTA
CTATTGTTCGTCATAAAGTTTAAGCGTGGAATTGATTTATAACATTGGTC
TATAAGTTGACATAATTGAATATGGTATATTCCTCATTATGGTCAAAAAA
ATTCTAACATTCAGGTTTAATATTATTGGTCCATATATTTCTAAATTCCA
CGAAACAAGAATATTCTCATGATTTAAAAAATCACCTATAGAATTGGTGT
TTTTGGGGCAAAATAAGCAATATTGTAAACAAAAATTCCTAATTCCGCGA
AAATTTCTTAAGTATTTGGTAGTAAGTTTTTGCTTATTTTCAGGTTTTCT
TTTGTTGCGGAGACGATACGTTAGGAGAGGCATGGATCCCTCTTGATAAA
TTAAGTGACACAAATAATAACAATCTCTTACCCTCTATGACCAATGGCAT
GTTCCCATTGCGCAGTTCAAAGAATGATCATCGGTCATTGGCGTGCGTGG
GCGTCAGTGTGGTCCTGAGGCGTGAAGATCAACCGGCACCCGTTGTTGCG
ACGGACCCAGGGTTGAGCCCGGTTGAAAAGTTGGCTGATAAAAAGGTTTG
AAAGTTATTCATTACGAATCTGTCTAGCGTAATACTAGACGTCGTCGCGT
TGCGAACGTATGGTAAGAGCGTTGCTTGCGTATAAAAACCTCTCTTATAC
AAAGGTGGGCTATACAGTGTGCCGCAAAAAATATGGACAAATTTCTTTAT
GGAGCAAAATCGGCATATATTAGAAATCACTATTTAATTTATGGGTTGAT
AAAATTTTTACAAATTGTATTTACAGTAGGGAATATGGGTAATTAACCGA
ATCAGTAAAGAAATTGTTTACGAACTAAAAGTTACATCATAGTAGGGCTT
AGCTTCCAAGTATGATGTAAAAATCGCAACCCCTATATTTTTTAGACCTA
CCCCGGTGGAGGTCCTTTATAAATTATAACCTGTGTCCTTCTGTCCGTCC
GTCCGTCCGTCTGATGCAAGCTTTACTTGGCAAGTTTTACTGTGTTAGTC
CTCTTTGAGATTGAGATTGTCCTTGTTTCATGTAGAAGAATGGTCAATAT
TTTCATANGTTAGTCATCTTTGAAATTGAGATTGCCCTTGTTTCATGTAG
AAGAATAGTCAATATTTTCATATGATAAAAAGGCCAATCTCAAAAGCAGA
ACAGAATTGCAAGATTTCAAATCTTCCAAGACACTTATTTTGAAATTAAA
CCTTTAGTCGTGTAGACGACGATATTTAGTAAACTGAATTCAAGATTTGA
ATGTTTTATTTCGTTCTTAGGCCGTATCACCAGACACCATTACACCCACC
GCCTCTCCACGTTTGGTGCACTCACCGCCACCACCGTCTTCCCCGCCCCA
ACAGCGAACGCCAAAGAAAAATCAAAATCAAAATTCCAGAGTAAAAACAA
GGGTATTCAAATTGTTATTGTTTTAACACAGGTTATCATACTTTAATAAG
ATGAATTTTCAAGAATAAGCTCTTTTCGAATTTTTGGACTTGATGCTTTT
TTTAAGAATGGTGTTTTTTCCAATTCATTGTGAATATTCTTAATTTTTGG
GGAAGAAAATTGCTCCTGAAATATTCTTACGGTATTAAATTGTAATACAT
ATGTAATACATATCTGAAGAAGAGATTTTGCACTTTTGTAGACTCTTTTA
GCATTGCTGGGGAGTATCTCATTGGTAATTTGATGATAAAATGCTCTAAA
AATGGCATTCTTAGGTTCAGTTGTCAGATTCCATGATGGTGATATTCTTA
CCATATTGTTAACTTTTTGGCCAATTTCTTCATAAAATATTCTTATGAAG
TATATTCTTATAATAAAAGAAAAAGCGTGTAAATGTATTAATTCCACTCT
AGCAATCACCAGAGAAGTCGAAGAATAGAAAGGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044990XLOC_044990Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072504-exon-scaffold_78-1575043694:118758..118932TCONS_00072504-exon-scaffold_78-1575043694:118758..118932Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1575043694:118088..118339TCONS_00072504-exon-scaffold_78-1575043694:118088..118339Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1575043694:117231..117362TCONS_00072504-exon-scaffold_78-1575043694:117231..117362Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1575043694:116745..116780TCONS_00072504-exon-scaffold_78-1575043694:116745..116780Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1510915933:118758..118932TCONS_00072504-exon-scaffold_78-1510915933:118758..118932Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1510915933:118088..118339TCONS_00072504-exon-scaffold_78-1510915933:118088..118339Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1510915933:117231..117362TCONS_00072504-exon-scaffold_78-1510915933:117231..117362Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1510915933:116745..116780TCONS_00072504-exon-scaffold_78-1510915933:116745..116780Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1491911889:118758..118932TCONS_00072504-exon-scaffold_78-1491911889:118758..118932Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1491911889:118088..118339TCONS_00072504-exon-scaffold_78-1491911889:118088..118339Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1491911889:117231..117362TCONS_00072504-exon-scaffold_78-1491911889:117231..117362Clytia hemisphaericaexon
TCONS_00072504-exon-scaffold_78-1491911889:116745..116780TCONS_00072504-exon-scaffold_78-1491911889:116745..116780Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_78supercontigscaffold_78:116745..118932 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.673974	1.14909	0.825741	0.268696	0	0	1.01933	0.243325	0.218554	0	0	0	0	0	0	0	0	0	0	0	0.987624	2.04436	0	0	0	0
Blast
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BLAST of TCONS_00072504 vs. Swiss-Prot (Human)
Match: CE120 (Centrosomal protein of 120 kDa OS=Homo sapiens GN=CEP120 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 3.423e-21
Identity = 53/123 (43.09%), Postives = 66/123 (53.66%), Query Frame = 2 
Query:   20 FYFYYSLLDNDVTNETFYELMTPSIPTERASVRIFTTFRRLDVYLKRKQTLKVFFCCGDDTLGEAWIPLDKL--SDTNNNNLLPSMTNGMFPLRSSKNDHRSLA--------CVGVSVVLRRE 358
            F+FYYSLL NDVTNE F +L+ P+   ERASVRI ++   L VYL  +  L++  CCGD +LG   IPL  L    +   N  P    G F L       + LA         VGVSV L+RE
Sbjct:  219 FFFYYSLLGNDVTNEPFNDLINPNFEPERASVRIRSSVEILRVYLALQSKLQIHLCCGDQSLGSTEIPLTGLLKKGSTEINQHPVTVEGAFTLDPPNRAKQKLAPIPVELAPTVGVSVALQRE 341
The following BLAST results are available for this feature:
BLAST of TCONS_00072504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CE1203.423e-2143.09Centrosomal protein of 120 kDa OS=Homo sapiens GN=... [more]
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