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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072503 ID=TCONS_00072503|Name=TCONS_00072503|organism=Clytia hemisphaerica|type=transcript|length=3436bpRun BLAST on NCBI protein sequence of TCONS_00072503-protein >TCONS_00072503-protein ID=TCONS_00072503-protein|Name=TCONS_00072503-protein|organism=Clytia hemisphaerica|type=polypeptide|length=948bp MAEDMLLVLSLVEGQHFPKRPHHHLIIEANFDGEILNTDSVKHSDCPKFNRun BLAST on NCBI transcript from alignment at scaffold_78:102791..122166- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072503 ID=TCONS_00072503|Name=TCONS_00072503|organism=Clytia hemisphaerica|type=transcript|length=19376bp|location=Sequence derived from alignment at scaffold_78:102791..122166- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_78:102791..122166- >TCONS_00072503 ID=TCONS_00072503|Name=TCONS_00072503|organism=Clytia hemisphaerica|type=CDS|length=56940bp|location=Sequence derived from alignment at scaffold_78:102791..122166- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072503 vs. Swiss-Prot (Human)
Match: CE120 (Centrosomal protein of 120 kDa OS=Homo sapiens GN=CEP120 PE=1 SV=2) HSP 1 Score: 637.876 bits (1644), Expect = 0.000e+0 Identity = 384/1010 (38.02%), Postives = 581/1010 (57.52%), Query Frame = 3
Query: 24 AEDMLLVLSLVEGQHFPKRPHHHLIIEANFDGEILNTDSVKHSDCPKFNTELAWEIDKKSLHQHKLQRTPIKIQVYAIEATNLRKEIVGYCILDLRTAQTADINKKSNWFNLLNSKYSNLKPRIKLSLNIEDDXXXXXXXXXXXXXXXFQFRTPEKQKSPSANTGKSPPVNTDDSFEIVLDDEQGYYLMGPEKSDCQTYVLSVAINGIKDLVSLIPSTSVISSENG-FYFYYSLLDNDVTNETFYELMTPSIPTERASVRIFTTFRRLDVYLKRKQTLKVFFCCGDDTLGEAWIPLDKL--SDTNNNNLLPSMTNGMFPLRSSKNDHRSLA--------CVGVSVVLRRE-------------DQPAPVVATDPGLSPVEKLADKKAVSPDTITPTASPRLVHXXXXXXXXXQQRTPKKNQNQNSRVK-------TRQSPEKSK-------------NRKE----------RKEHHFVCSVDLRSIGHMDIPQPVHCFCRYSYPFFGSSSPVLTNPPVYLQRNCEVVLPQSFCQFEFASHMETVQSTLARVPLVIEVWSRSQNHKDELIGICHVQLSNIFAS--SNFQERSGPV----VCSEKVPIVSSNRPGLKMGVIHVVFSFEDRGEINNIK-FSPRRDQTSQSTDDTPSYNPPAPPANQRQHQEDEGRRAKEYEVAMALELWRQQQEEHFLNQLKAREKERMKALADEWKQRDLEREKLLARKIQEFNLLENTLKTSLSELQLKQRQVNEEEQLLEKKKAHLADEFDRKVCEMREASKRLKEEYQHQLQIEKNKQKEVEERYQRMVEHSQELERKVKEKDNEIYALKESLVKRPEVKMQSDMNILLIEKNELERKIEAVTKSKIHYKQQWGRALRELARIKTNEQEEAKSRLKKQQQELDHMKLRYLAAXXXXXXXXXXXXLDQVKDEINKRLTDLQTNYEQ--QMSAATDHNHQQELIENHHGDRVAKLLEERDTLLHTGVYTNDDPVISELDKEIRLMIADKNT 2864
++ +L+V+S++EG+HFPKRP H L++EA FDGE L TD V H+D P+F TELAWEID+K+LHQH+LQRTPIK+Q +A++ KE +GY +LDLRTAQ + + W+ LL++KY+ K I++S+ +E D +S K P K P+ G P VL++E GY+ +GP + ++++SV I L LIP T + F+FYYSLL NDVTNE F +L+ P+ ERASVRI ++ L VYL + L++ CCGD +LG IPL L + N P G F L + LA VGVSV L+RE ++ P + L+P++ +K P + PT SP H Q P K+ S V+ T+ +P+ S N E HHF S+DLRSI ++I P++C RYSYPFFGS++P++TNPPV +++N EV LPQS+C F+FA+ +Q T R+PL++E+W + + KD L+GI +QLSNI +S + F +G SE VP++++ ++ + + ED G + + F Q + PS PPAP ++ Q E R EY+ A+ LE+W++ QE+ F NQLK +E M+ALA+EWK+RD ERE L+ +K+ E+ +LE L+ +L +L+ +++Q+ E L+++K L E R + E++++ +R KE+ HQ+++E+ K K++EE R+ + + E K K + E K+ +PE+++QS++N+L +EK ELERK+E+ TKSK+HYKQQWGRAL+ELAR+K EQE +RLKKQQ+EL+ M+LRYLAAEEK ++TE++EL +++E+N+ Q Y+ ++++ ++E D + +L+EERDTL+ TGVY ++D +ISELD++IR ++A N
Sbjct: 5 SDQLLIVVSILEGRHFPKRPKHMLVVEAKFDGEQLATDPVDHTDQPEFATELAWEIDRKALHQHRLQRTPIKLQCFALDPVTSAKETIGYIVLDLRTAQ--ETKQAPKWYQLLSNKYTKFKSEIQISIALETDTKPPVDSFKAKGA------PPRDGKVPAILAGLDP-----RDIVAVLNEEGGYHQIGPAEYCTDSFIMSVTIAFATQLEQLIPCTMKLPERQPEFFFYYSLLGNDVTNEPFNDLINPNFEPERASVRIRSSVEILRVYLALQSKLQIHLCCGDQSLGSTEIPLTGLLKKGSTEINQHPVTVEGAFTLDPPNRAKQKLAPIPVELAPTVGVSVALQREGIDSQSLIELKTQNEHEPEHSKKKVLTPIK---EKTLTGPKS--PTVSPVPSH---------NQSPPTKDDATESEVESLQYDKDTKPNPKASSSVPASLAQLVTTSNASEVASGQKIAVPATSHHFCFSIDLRSIHALEIGFPINCILRYSYPFFGSAAPIMTNPPVEVRKNMEVFLPQSYCAFDFATMPHQLQDTFLRIPLLVELWHKDKMSKDLLLGIARIQLSNILSSEKTRFLGSNGEQCWRQTYSESVPVIAAQGSNNRIADLSYTVTLEDYGLVKMREIFISDSSQGVSAVQQKPSSLPPAPCPSEIQ---TEPRETLEYKAALELEMWKEMQEDIFENQLKQKELAHMQALAEEWKKRDRERESLVKKKVAEYTILEGKLQKTLIDLEKREQQLASVESELQREKKELQSERQRNLQELQDSIRRAKEDCIHQVELERLKIKQLEEDKHRLQQQLNDAENKYKILEKEFQQFKDQQNNKPEIRLQSEINLLTLEKVELERKLESATKSKLHYKQQWGRALKELARLKQREQESQMARLKKQQEELEQMRLRYLAAEEKDTVKTERQELLDIRNELNRLRQQEQKQYQDSTEIASGKKDGPHGSVLEEGLDDYLTRLIEERDTLMRTGVYNHEDRIISELDRQIREILAKSNA 984 The following BLAST results are available for this feature:
BLAST of TCONS_00072503 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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