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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072497 ID=TCONS_00072497|Name=TCONS_00072497|organism=Clytia hemisphaerica|type=transcript|length=3656bpRun BLAST on NCBI protein sequence of TCONS_00072497-protein >TCONS_00072497-protein ID=TCONS_00072497-protein|Name=TCONS_00072497-protein|organism=Clytia hemisphaerica|type=polypeptide|length=546bp MMRAPVMVLNQNTKREQGKKIQISNIDAAKTVADIIRTCLGPKAMLKMLMRun BLAST on NCBI transcript from alignment at scaffold_78:272144..284040+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072497 ID=TCONS_00072497|Name=TCONS_00072497|organism=Clytia hemisphaerica|type=transcript|length=11897bp|location=Sequence derived from alignment at scaffold_78:272144..284040+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_78:272144..284040+ >TCONS_00072497 ID=TCONS_00072497|Name=TCONS_00072497|organism=Clytia hemisphaerica|type=CDS|length=16410bp|location=Sequence derived from alignment at scaffold_78:272144..284040+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00072497 vs. Swiss-Prot (Human)
Match: TCPG (T-complex protein 1 subunit gamma OS=Homo sapiens GN=CCT3 PE=1 SV=4) HSP 1 Score: 774.237 bits (1998), Expect = 0.000e+0 Identity = 356/544 (65.44%), Postives = 463/544 (85.11%), Query Frame = 2
Query: 425 MMRAPVMVLNQNTKREQGKKIQISNIDAAKTVADIIRTCLGPKAMLKMLMDPMGGIVMTNDGNAILREIIVQHPAAKSMLEISRTQDEEVGDGTTSVVILAGEVMSVAAQFIEDKIHPTLIIAAYRKALDDMLEVLKDQVSIPIDVNNDEEMLKTLQSCLGTKFLNQWSNLACTMALKAVRTCMIENNGHREIDIKRYAKVEKVPGGTLEDSRVLDGIMLNKDVVHPRMNRRIENPRILLLDCNLEFKKGESQTNIELSGEMDFNKILQLEEEFIKKMCNEIIAFKPDLVITEKGVSDLAQHYLVKAGISVLRRLKKTDNNRIARAVGATIVNRPEEIKEEDLGLGCGLFEVQKMGDEYFSFITQCKNPKACTILLRGASKDILNEVERNLQDALHVARNVMQDPRLVPGGGAAEMAISNALEEKAKSVEGVMQWPYKAIARAMEIIPKTLIQNCGVNSIRKLTALRAKHAEGSNTTWGIDGETGEIADMNTIGVWDCYSVKAQTYKTAVETAMLLLRIDDIVSGTKK----NTGEAAAPSVDQ 2044
M PV+VL+QNTKRE G+K+Q NI+AAKT+ADIIRTCLGPK+M+KML+DPMGGIVMTNDGNAILREI VQHPAAKSM+EISRTQDEEVGDGTTSV+ILAGE++SVA F+E ++HPT++I+AYRKALDDM+ LK ++SIP+D+++ + ML + S + TK +++WS+LAC +AL AV+ E NG +EIDIK+YA+VEK+PGG +EDS VL G+M+NKDV HPRM R I+NPRI+LLD +LE+KKGESQT+IE++ E DF +ILQ+EEE+I+++C +II KPD+VITEKG+SDLAQHYL++A I+ +RR++KTDNNRIARA GA IV+RPEE++E+D+G G GL E++K+GDEYF+FIT CK+PKACTILLRGASK+IL+EVERNLQDA+ V RNV+ DP+LVPGGGA+EMA+++AL EK+K++ GV QWPY+A+A+A+E+IP+TLIQNCG ++IR LT+LRAKH + + TWG++GETG + DM +G+W+ +VK QTYKTAVETA+LLLRIDDIVSG KK + + AP Q
Sbjct: 2 MGHRPVLVLSQNTKRESGRKVQSGNINAAKTIADIIRTCLGPKSMMKMLLDPMGGIVMTNDGNAILREIQVQHPAAKSMIEISRTQDEEVGDGTTSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLK-KISIPVDISDSDMMLNIINSSITTKAISRWSSLACNIALDAVKMVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRGASKEILSEVERNLQDAMQVCRNVLLDPQLVPGGGASEMAVAHALTEKSKAMTGVEQWPYRAVAQALEVIPRTLIQNCGASTIRLLTSLRAKHTQENCETWGVNGETGTLVDMKELGIWEPLAVKLQTYKTAVETAVLLLRIDDIVSGHKKKGDDQSRQGGAPDAGQ 544 The following BLAST results are available for this feature:
BLAST of TCONS_00072497 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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