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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072484 ID=TCONS_00072484|Name=TCONS_00072484|organism=Clytia hemisphaerica|type=transcript|length=2414bpRun BLAST on NCBI protein sequence of TCONS_00072484-protein >TCONS_00072484-protein ID=TCONS_00072484-protein|Name=TCONS_00072484-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp MSVYFVDSMEDSDDSSNSPLVISTDNYEGGISKSRTCCLCSKKSCVIINVRun BLAST on NCBI transcript from alignment at scaffold_78:133211..177884+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072484 ID=TCONS_00072484|Name=TCONS_00072484|organism=Clytia hemisphaerica|type=transcript|length=44674bp|location=Sequence derived from alignment at scaffold_78:133211..177884+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_78:133211..177884+ >TCONS_00072484 ID=TCONS_00072484|Name=TCONS_00072484|organism=Clytia hemisphaerica|type=CDS|length=5310bp|location=Sequence derived from alignment at scaffold_78:133211..177884+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00072484 vs. Swiss-Prot (Human)
Match: ASM3B (Acid sphingomyelinase-like phosphodiesterase 3b OS=Homo sapiens GN=SMPDL3B PE=1 SV=2) HSP 1 Score: 114.39 bits (285), Expect = 9.541e-27 Identity = 101/395 (25.57%), Postives = 171/395 (43.29%), Query Frame = 3
Query: 981 SAPYGRVHCDSPYKLVQSSADYIGTLNEESNVKAQFILLSGNNDIPLHYNPPVEHPESFYGDLSKEVTKYI---FPKSSVLAEL-------------------NSVKEF------NES---FLQGGYYAVNV---SEFLQLITLSTNYWNSRCFTINPSITTIGD--RQMKWLENTLKTAAATNKKVLVSGHIPAGISTYKDEGSFWLKNYTTVYVKLMTDFADIITGQFYGHAHKDKIKIQNVHDSFYPNTQPSIPKAFLLMSPSITPIQ---------GNNAAFRLFTLSK-DLELSDYTQYYMDFILANVFSKPSWKKEYTFSECYGA-SISAKSIQDIVQNFISSSDNSTWVRYMTHMRTLY-GGFSTEVM-FREYCGAQHFTLEAYLACV 2018
+ P+G CDSP+ L+ SS + + E + FIL +G+ D P + P + E+ ++ + +TK I FP + V A L N + E NES F +G +Y + S +++ L+TN + +T N + D +Q +WLE+ L A+ V + GH+P G +++ + + Y+K++ +I GQF+GH H D ++ Y + +P + + ++P +TP + NN A R+F + L L D Y+M+ AN P W+ EY +E YG SA S+ ++ + D ST RY + Y G E + C + ++AY C+
Sbjct: 56 AGPWGDYLCDSPWALINSSIYAMKEIEPEPD----FILWTGD-DTP--HVPDEKLGEAAVLEIVERLTKLIREVFPDTKVYAALGNHDFHPKNQFPAGSNNIYNQIAELWKPWLSNESIALFKKGAFYCEKLPGPSGAGRIVVLNTNLY----YTSNALTADMADPGQQFQWLEDVLTDASKAGDMVYIVGHVPPGFFEKTQNKAWFREGFNEKYLKVVRKHHRVIAGQFFGHHHTDSFRM------LYDDA--GVPISAMFITPGVTPWKTTLPGVVNGANNPAIRVFEYDRATLSLKDMVTYFMNLSQANAQGTPRWELEYQLTEAYGVPDASAHSMHTVLDRI--AGDQSTLQRYYVYNSVSYSAGVCDEACSMQHVCAMRQVDIDAYTTCL 429 The following BLAST results are available for this feature:
BLAST of TCONS_00072484 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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