TCONS_00072466 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072466
Unique NameTCONS_00072466
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072466 ID=TCONS_00072466|Name=TCONS_00072466|organism=Clytia hemisphaerica|type=transcript|length=782bp
aaatGACAAGAAATAATGTACCGGTGATAAACCTATCTATAAAATGCCTG
CTTAACTATAACAGGATTAAAAACTCGACGTGGAGTGATTTGTCATTGAG
TTAGTACTTCCTAATGTGTTAATCCAACTTGCACGAGTTAAAATTAAATG
GAGAAGAAAAACTAAGCGTGAATAAAAATGGTAACACACATTCTGATAAA
AGATGTGATATGAAAAACATCCGTACCTCTGTTTAACTCTTGGGTAAACg
caagccttatgttcttatatggtttgttcttataataaaaaaacgtgtag
aaaacGAGAGCTGTATGAAAATCGAAAACTACAGACGAATCTTACCTGTG
TTTTTTCcaaagtaaaaacaaaaccatttTGTTGTAACTCGATTCCAGCT
TCCCAGTTCAACTTCTTTAAAACATCATTTTCTGGGAAATACACATTCAA
ATTAATTAGATTAAAGTCTTGGAACAATTAGAGACTAATCCCAAAAACAT
CTACCTCTTTATCCCCCCACTATCAATCCGATGTCAAAGTATGGAGTGGg
acaagatttaaagttcctcTTCTCCACGTCAACAGCACAAAAGAAACAAC
GAACTTTATTGACCATAGCTCACGTTTCGTGACAAAAAGAATGTTAATCG
TCCTCAAAagtatcaaatttttcagaaagatTTTGTTGCAGGCGCTAAAA
ATAACAGTATATTAAATATGGCGTCGAATGATAAAGTAGATGATCAGATA
TTCCATCGAGACGAGCATAGACAAGAAAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_77:487723..488504

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072466 ID=TCONS_00072466|Name=TCONS_00072466|organism=Clytia hemisphaerica|type=transcript|length=782bp|location=Sequence derived from alignment at scaffold_77:487723..488504 (Clytia hemisphaerica)
CTTTTTTCTTGTCTATGCTCGTCTCGATGGAATATCTGATCATCTACTTT
ATCATTCGACGCCATATTTAATATACTGTTATTTTTAGCGCCTGCAACAA
AatctttctgaaaaatttgatactTTTGAGGACGATTAACATTCTTTTTG
TCACGAAACGTGAGCTATGGTCAATAAAGTTCGTTGTTTCTTTTGTGCTG
TTGACGTGGAGAAgaggaactttaaatcttgtcCCACTCCATACTTTGAC
ATCGGATTGATAGTGGGGGGATAAAGAGGTAGATGTTTTTGGGATTAGTC
TCTAATTGTTCCAAGACTTTAATCTAATTAATTTGAATGTGTATTTCCCA
GAAAATGATGTTTTAAAGAAGTTGAACTGGGAAGCTGGAATCGAGTTACA
ACAaaatggttttgtttttactttgGAAAAAACACAGGTAAGATTCGTCT
GTAGTTTTCGATTTTCATACAGCTCTCgttttctacacgtttttttatta
taagaacaaaccatataagaacataaggcttgcGTTTACCCAAGAGTTAA
ACAGAGGTACGGATGTTTTTCATATCACATCTTTTATCAGAATGTGTGTT
ACCATTTTTATTCACGCTTAGTTTTTCTTCTCCATTTAATTTTAACTCGT
GCAAGTTGGATTAACACATTAGGAAGTACTAACTCAATGACAAATCACTC
CACGTCGAGTTTTTAATCCTGTTATAGTTAAGCAGGCATTTTATAGATAG
GTTTATCACCGGTACATTATTTCTTGTCattt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044978XLOC_044978Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072466-exon-scaffold_77-1491911889:487723..488504TCONS_00072466-exon-scaffold_77-1491911889:487723..488504Clytia hemisphaericaexon
TCONS_00072466-exon-scaffold_77-1510915933:487723..488504TCONS_00072466-exon-scaffold_77-1510915933:487723..488504Clytia hemisphaericaexon
TCONS_00072466-exon-scaffold_77-1575043694:487723..488504TCONS_00072466-exon-scaffold_77-1575043694:487723..488504Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:487723..488504 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.123832	0.181133	0.140208	0.0299908	0.361033	0.131961	0	0.0745229	0	0	0	0.0824711	0	0	0.0351578	0	0.0464799	0.0476404	0	0	0.0598637	0.0875982	0	0	0	0	0	0	0.41233	0.140033
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072466 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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