TCONS_00072464 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072464
Unique NameTCONS_00072464
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length422

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072464 ID=TCONS_00072464|Name=TCONS_00072464|organism=Clytia hemisphaerica|type=transcript|length=422bp
ATTCTCCCCTTGGGGAAACTGAAAGTCTCGTGGTCGGACAAGCGGTTTGT
GGACGCAACGACGCGACAACCGATAACGATGAAGTGCCGAACGCGAGTAT
GGAAGCCCGACGAGAAGAACTTAAATGACTAACGAAACACttaaatttat
cattttatatgtatttttttttggtaactgGTTAATTGACGTATTGATAA
AGACAATCAATGGTAAAATTTAAgctataattgttacattccgATGGAAA
ATGCCATTTGGGGTCCAAATGTTTGGGGGCCCCGGCTGTTGTCATGGTGA
AGAAACTAAAGAATAATCTAGAATCTAGAAAGAAGCTACAAAAATATGAA
TGTGTGTAAATTATTAAagactttgatttcaaaagaacATTTTCGTTTTA
CAAAAAAGAACACTCGCCCACC
Run BLAST on NCBI

transcript from alignment at scaffold_77:440380..440801

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072464 ID=TCONS_00072464|Name=TCONS_00072464|organism=Clytia hemisphaerica|type=transcript|length=422bp|location=Sequence derived from alignment at scaffold_77:440380..440801 (Clytia hemisphaerica)
GGTGGGCGAGTGTTCTTTTTTGTAAAACGAAAATgttcttttgaaatcaa
agtctTTAATAATTTACACACATTCATATTTTTGTAGCTTCTTTCTAGAT
TCTAGATTATTCTTTAGTTTCTTCACCATGACAACAGCCGGGGCCCCCAA
ACATTTGGACCCCAAATGGCATTTTCCATcggaatgtaacaattatagcT
TAAATTTTACCATTGATTGTCTTTATCAATACGTCAATTAACcagttacc
aaaaaaaaatacatataaaatgataaatttaaGTGTTTCGTTAGTCATTT
AAGTTCTTCTCGTCGGGCTTCCATACTCGCGTTCGGCACTTCATCGTTAT
CGGTTGTCGCGTCGTTGCGTCCACAAACCGCTTGTCCGACCACGAGACTT
TCAGTTTCCCCAAGGGGAGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044976XLOC_044976Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072464-exon-scaffold_77-1491911889:440380..440801TCONS_00072464-exon-scaffold_77-1491911889:440380..440801Clytia hemisphaericaexon
TCONS_00072464-exon-scaffold_77-1510915933:440380..440801TCONS_00072464-exon-scaffold_77-1510915933:440380..440801Clytia hemisphaericaexon
TCONS_00072464-exon-scaffold_77-1575043694:440380..440801TCONS_00072464-exon-scaffold_77-1575043694:440380..440801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:440380..440801 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.333124	0.649697	0.565771	0.184506	1.12309	0	1.90557	1.9965	0.421076	1.73857	1.51875	0.776506	2.07718	1.32153	1.22953	1.11648	0.750226	0.897117	0	0.741119	2.09354	0.942606	0.874246	0.520877	0.57961	0.404053	1.37034	0.243744	0.369742	0.376709
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072464 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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