TCONS_00072452 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072452
Unique NameTCONS_00072452
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1171

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=transcript|length=1171bp
AAAACCTCCGTTTTTATGATTACCAAATTTTGCACTCGTTACTTTGGGTA
ATTTTTACATAAATACACCGGATTGGCCTGAGGAAAGTATCATCACTTGA
CCAGCCAAGGATTTCTTGTAGTTGACACATCATGATGAAGATTTTGTTAC
TTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAATG
GAGAACCAAGAACTTTTCCAAGGAGACATTGTTTTGGACCCTGATGAAGA
TGAACGTGGGTTGAACAAAAACACTTTCGCCAGCATCAAAGGTGGACGTT
GGCCAAACGCAAGAATCCCTTATGTCATTGACGGAAGCATCAGCTCAAGA
GGTCGATCGGCCATTTCCGCTGCGATTAGTGATTACCACAGTTACACCTG
TATCCGATTTCACCGAAGAACAAACGAACGAAGTTACATCAAATTCTACA
AAGGACGAGGATGTTCATCACCAGTTGGATACAGATATGGACGTGTCAAC
TCCGTTTCTTTGGCTTCTGGATGTTGGACGAAAGGTGTCGTCATTCACGA
GATCGGACACTCAATTGGTCTTTACCACGAACAATCACGACCAGATCGTG
ATAACCACGTTAGAATCCAAACACAAAACATCATCTCTGGCATGGCTTAC
AACTTCAACAAACAACGATCATCAAATATCGACTCCAAAGGAACTCCATA
CGATTTTGATTCCATCATGCATTATGGACCATATGCTTTCGCAAGAAGTC
GTGGTTTAATCACTATCAAAACTTTAGATCCAAAcTACCAAAATCGTATC
GGCAACAGAGGTGGATTCAGTACTATCGATAAGCGACAAATCAACTTAAT
GTATTGTGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAA
ACGGAGGCGGTTCTGGATCATGTTCTGATAAAGTCACTGATTGTCAAAAA
AACATCCAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAA
GAAACATTGCCAAAAATCTTGCGGATTCTGTCGCTAAATAATGGCGCCCG
ATGCATATTATGAAAACATTGTATGTTATACATAATAGCATAATATGAGA
ATGTAATATGGTATTATTTACATTAAATCATTAATTATTAAGAGATTTAC
GAGAATATACAGAAAGAAATA
Run BLAST on NCBI

protein sequence of TCONS_00072452-protein

>TCONS_00072452-protein ID=TCONS_00072452-protein|Name=TCONS_00072452-protein|organism=Clytia hemisphaerica|type=polypeptide|length=301bp
MMKILLLLVVFSGVVFSEWIKEMENQELFQGDIVLDPDEDERGLNKNTFA
SIKGGRWPNARIPYVIDGSISSRGRSAISAAISDYHSYTCIRFHRRTNER
SYIKFYKGRGCSSPVGYRYGRVNSVSLASGCWTKGVVIHEIGHSIGLYHE
QSRPDRDNHVRIQTQNIISGMAYNFNKQRSSNIDSKGTPYDFDSIMHYGP
YAFARSRGLITIKTLDPNYQNRIGNRGGFSTIDKRQINLMYCGGSGGNGG
NGGNGGNGGGSGSCSDKVTDCQKNIQGCRSWGQAWIDYMKKHCQKSCGFC
R
Run BLAST on NCBI

transcript from alignment at scaffold_77:529960..536817-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=transcript|length=6858bp|location=Sequence derived from alignment at scaffold_77:529960..536817- (Clytia hemisphaerica)
AAAACCTCCGTTTTTATGATTACCAAATTTTGCACTCGTTACTTTGGGTA
ATTTTTACATAAATACACCGGATTGGCCTGAGGAAAGTATCATCACTTGA
CCAGCCAAGGATTTCTTGTAGTTGACACATCATGATGAAGATTTTGTTAC
TTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAATG
GAGAGTAAGTATCCCGGCTAGGACATACCTTATCGGGGAAAACTTCGTCG
GGGAAAAGTGACGAAATTTCGGCCAATTGACGAATATTTTTCCCCGACGA
AAATTTTCCCCGGCCTTAATGCGTTTACCAAAACCAGCAAGTGACGAATA
TTTTTCCCCGACGAAAATTTTCCCCGGCCTTAATGCGTTTACCAAAACCA
GCAAGTGACGAATATTTTTCCCCGACGAAAATTTTCCCCGACGAAAATTT
TCCCCGACGAAGTTTTCCCCGATAAGGTAATGAAGTTTCAGCGTTCCATA
ACTAACATTGGTCCCCTCAACTGGGAAGTGGTTTGGATTACTTTCTTTAC
TTTTTACTTTTAATTCGTTTTCTGTCCCTTGAAAAACGAATTAGTGGGTG
TCAACTTTCTACCGTCGTTTTGTATAAGATTCCTATTTACGCACTAAGAT
TCCTTTGCCACTTTTCTAGCGGAAAAAAGTTGAAAAAAGTTAAAAAAAAC
TTTGAAAAATTAGACAGTTTCGTGAGTAAACACAAGATTTTCCGTACCTT
TAGAAACAAACTGATGGAGCTTCTTACCAATAATGGGGATGAAAATTTTA
TTAAGTCCCAACTAGAAAAGAAAATATTCTTCCAAGCTTAAAAAATCAAG
TGGGATGTTTTTTGAGTGCAGTTTTCTCCATTGTATTTAAAAAAACATCA
AATGAGACGAAGTTTAACATTTCTTGATATAACTCTAAACTGAGTGCACC
GGTGATGTTCTCATTAGATGTTCTACATTGCTAAGATCACGAATTTATGA
GCTTTGCTCACTGTTTTCAATTCTGATAGCACTCACGGTTCTATCACGTC
CGCAAAATAAAAAAAGTGACCTTAAATGGTTCCGGGATATGCCATTATAC
ATTTCTATATCAAATTTCTTTTTCTTTTAACAGACCAAGAACTTTTCCAA
GGAGACATTGTTTTGGACCCTGATGAAGATGAACGTGGGTTGAACAAAAA
CACTTTCGCCAGCATCAAAGGTGGACGTTGGCCAAACGCAAGAATCCCTT
ATGTCATTGACGGAAGCATCAGCTCAAGAGGTACGTGACGTGTACGTGAT
GCTAAAAAAATGTCATGTAAGATTACGTGTTTTAAGATTGATTGTCAGAT
GACATTTCCATAAACGTTGAAACAAGGTTTTTCCTCTTGAAAATCGTGTT
CGCGGCCTTGACGAAATCCGTTTTGATTAGGACGGAGGACCTTATCGATA
ACAGGACGAATTTGGTTTAGGATACAATGGTTGTAGACTTTAGCTGCTAT
TTGAGATAGTGCAATGCCTCGCGTACATGTAACTCCCTGCGTATTATGAG
CCCCCACCCCAAGCAGTTTTCGTGATGGCGTGATAGGGACCTTTTTCTAT
TGTGATTACGTGATTTGGAAATATTTTCTTTGTGATTGCGTGATTAGATT
TTTGAGCCATGATACGTGGATTCGGACTTTTTCAAAGGGATGCGTACTTA
TTCATTTTTTTTTGCTGATTTTTGTGATCGTGATTGAAGACAAATCGCGT
GATATCATGATTAGACTTACCGCTGGAGGCCTCTAATATCAGATTTTTTA
TGTTTACTGAAAAGCCTCAAATGATATCTTTAGCACCCATCAGTGATATA
ACAAACGCAATGAAATACATGGGGACGAGGTTGTTTCAAGCTTAAAAACA
AAGATTTACTGAGACTGAGGATTGGCCCCGTGAATCTGCTTGGATAATGT
TAAACAAATTATCTGATTGATGAATTTCGTTTTATATACAGGTCGATCGG
CCATTTCCGCTGCGATTAGTGATTACCACAGTTACACCTGTATCCGATTT
CACCGAAGAACAAACGAACGAAGTTACATCAAATTCTACAAAGGACGAGG
GTATGTTAGTTTAGAGTGTTTATCACACAACGTTGTTTTAACGTTTATCT
AACGTTCACAACGTCCATATAACGTTCACAACGTCCATATAACGTTAAAT
GAACGTTGAAACAACGTTGTGTGCCAGCTGGGTACAAAGTCTACTTTAGA
TGTAGTTAGCTGAAAAAAGTAGTTTCTGAAGAATTTTTTAACGATTTTAC
ATCAAATTCTACCGTGGAAACATTAGAATGTTAATCACTTTAGTGGCTAT
CCTACTCTAGCGGTACTTGGTTAAGTTATATAGGTTTTAAACAATTTTAT
AAGTTCTACAAGATTTAGATTCCCGGAAAGAGTCGAAAGACTTGTACAGC
GAAAATTGAATCAAATTACACCGTTCCCATAAAAATGTTAATCTGAAAAC
TACATTAAACGTATCAAAAAAGTTAATCGATTACAGTTGGCGCTCTCTAA
ATCGATGTTTTACGATTCAATCCACTCCGTTATTCGATAATATTGAAAAT
TACTGTCAACAAGAAACTCTCTAATTCGAGAGTAATTCATTACGCTATCT
TATTCAATGAAAATCCAATTCTTTTGTATCCCTAAACTCGATCCAATCCT
TTTGAGACACATTTTCAATTGTCTATAGATGCGAAAAAAGGACTGGGACG
GTTTTAGTGGCAGACANCCTAAACTCGAGACACATTTTCAATTGTCTATA
GATGCGAAAAAAGGACTGAGACGGTTTTAGTGGCATAAAGCGGACCAAAA
AATGCTCGCGTGGCAATTGGCGGCTACGGTCGTTATAAATTGTTATAAAT
TTGAATTATTCAACCAATCTTGTATTTTAGATGTTCATCACCAGTTGGAT
ACAGATATGGACGTGTCAACTCCGTTTCTTTGGCTTCTGGATGTTGGACG
AAAGGTGTTGTCATTCACGAANAGTTAATCGATTACAGTTGGCGCTCTCT
TAGTCAATGTTTTACGATTCAATCTACTCCGTTATTCGATAATATTGAAA
ATTACTGTCAACAAGAAACTCTCTAATTCGAGAGTAAACGCTATCTTATT
CAATGAAAATCCTCCAATTCTTTTGTATCCCTAAACTCGAGACACATTTT
CAATTGTCTATAGATGCGAAAAAAGGACTGAGACGGTTTTAGTGGCATAA
AGCGGACCAAAAAATGCTCGCGTGGCAATTGGCGGCTACGGTCGTTATAA
ATTGTTATAAATTTGAATTATTCAACCAATCTTGTATTTTAGATGTTCAT
CACCAGTTGGATACAGATATGGACGTGTCAACTCCGTTTCTTTGGCTTCT
GGATGTTGGACGAAAGGTGTCGTCATTCACGAGATCGGACACTCAATTGG
TAAGTAATGTCATTTTCAACCAATCAGATTTAATTTTCAAGTTTTCCAGC
CAATCACATTTAAGATTCAAAATTTTACAACCAATCAGATTTGATTTCCA
AGTTTATCAACCAATCACAGTCAAGATTCGAAATTTTTTTAATGAATTAA
ATTTAAGTTCAAACCTTTTTAACAAAACATTAGCCAAATGTTTAAACCAG
CCAAACCTCCCTACAAGTCTAAGCCAATGAAATTACAATAGCCACCTATT
TAAACCGTTAAACCAATCAGATTCAAGATACAAGATTTTTTCAACCAACC
ACATTTAAGAATCAAAATTTCCAACCAATCAAATTTGAGATTCAAAATTT
TCAATCAATCACATTTTAGATTCAAAATTTTCAACCAATCCACATTTAAG
ATTCAAAAATTTTAACCAATCAGATTTGATCTCCAAGATTTTTTAACCGA
TCAAATCTTTTTTAGGTCTTTACCACGAACAATCACGACCAGATCGTGAT
AACCACGTTAGAATCCAAACACAAAACATCATCTCTGGCATGGCTTACAA
CTTCAACAAACAACGATCATCAAATATCGACTCCAAAGGTTTGTACACGT
TTTTTTTTACAAGAACAAACTATATCAGAACNAACAAACAACGATCATCA
AATATCGACTCCAAAGGTTTGTACACGTTTTTTTTTATAAGAACAAACTA
TATCAGAACATCATCAGGCTTCGACGGCCAAAATTTTAAGAACAAGTTAA
GAACATTTAAAAGCTTTGCGAACCATAGAACACATGAATTTCTTCTAAGA
TAATTACTCATAAAATGGTGAAATTAGGACATTTTAAGAAAATTTTTAGG
CTTAAAACTCGAAAAATTAAGAACATCCAACAGACTCAAAAATTTTGGAT
GTTCTTATAAATAAACATAAATCAAAGTTAAATCATCAAAGAAGGTCAAA
CAAAGGCATCCTTAAGGGCGGAACATGAACCCGCACCCTAAATTTTACTG
AACACAAACCCCGGTCATAGAATGCCAAAAATGCTGAAAGTCATTTTACA
ATAAAAGCACTTCATATTGGAAGTCTATCGTGGCTTGGATCACGAGATTT
ACGTTTGGCTAGATTTCGAGAGATTCTTCTCTCTTCATCGGGTAAGGTGG
GGGATGTTTTCTTCACTATTTGTACTAAAACCGTCCTTACAAGGCCCCCC
CCCTTGTAAGGAACGTTTTAGTACAAATAGTGAAGAAAACATGCAGGGGT
TCGAAATATCATTTTCCCGATAATATTTTTGCTGAATCCCAGAATCCCTA
AAATTGAAAAAAAATAATAACACTGTCACACCAGTTTGTAGGGGTTAAAA
TACCCGGCATAATGACTCAAAAAATAAGGCTAAATACCGTCACCGTCTGA
TTTTAAAATACCGTTTTTTCGTCACTTTTTTCGTCAAATTCCGTAACACC
GTAATAAAAAAGGGCTAATCCCGTCACGATGTAAAAGTATAAGGTGTGAA
TCTCCTTGTTATCAAAGGTAAACCATTACTTTCTTCTTCGTTATAGGAAC
TCCATACGATTTTGATTCCATCATGCATTATGGACCATATGCTTTCGCAA
GAAGTCGTGGTTTAATCACTATCAAAACTTTAGATCCAAAGTATGTATTC
TCCGATTTGAACAAGAAACTCGATTTTAGAATGGGCTCTTCTAGCAGAAA
ATGTCATGGGGGTAGAGGATATAGTGTCCGGGGTAATGAAAAATCTACAA
AATTTGCCCCGTCCGGGGGGTAAACTTGCTCTGTTTGGGGGTAATTTTGT
TCGGTTTGAGGGTTATTTTGAATGTCCAGGGTGTCAACTGATGTATGTCC
AGGTGGTCAGACCTGCTATCTGGGGGGTCAAAAGTCACAAAATGTCCGGA
GGGTAAATTTCTAAAACATGACATACCCTCCACCCCCTATATTCAATTTT
TCTCTGGAAAAGCCTAATTTTGGAAACCTTATCAGTCCTTTATACGCCGA
GCCTTATAGGCGTTATTTTTTCGTCGCTGCCGTAATAAGTGCAAGAGACC
GGAAATAAATTGGCCCTAAATTGGGGCCAGGCTGAGATTGGAAAAAAAAT
CCTAAAATCTTTTGAAAATTAATAACTAGATAGGAGGACTTTTGAGTAGA
ATATCTTAACTTTTATTTATTTTGTAATTTTAAGCTACCAAAATCGTATC
GGCAACAGAGGTGGATTCAGTACTATCGATAAGCGACAAATCAACTTAAT
GTATTGTGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAA
ACGGAGGCGGTTCTGGATGTAAGTAACCAATCACATTATTTGTTTCAATC
TTTTCGAATAATCAGATTGTATATTCCAAATTTTGAACCAGTTAGATTAC
ACGTTTCCAAATTTTTGACCAATCACATTGTTTGTTTCAATATTTTGACC
AATCAGATTGCACGTTTCTAAATGTTTGACCAATCACGTTGCTAAGAATC
TACAGACTAGGTGTCTGCTTTAAGCTTTTCCTAGCATAAAAAGTGATTAT
CGCAAAAAAGTTGTTCTTGCTATTGTTTTTGAAAATCCGGGAAGGGCTGA
AATTCTATTATTTAATGTCACGTGACCTAGGTAAGATTTCACGGTACACC
TTTCGTCAAAGCAAACCACCAACTAGGCCTTCAGGCTTTTACACCAATCT
GTGATCTATGATATCTTTTTCGAAAGAATGGATTTTAGTACTAAGTGACT
AATAAAAAATATCGAACACGAAAATTTTGTTCAAAAATAAATGATTAAAC
ATATTTTAGGTTAACCCTTTCCGTGCCCATGTCAAGTGTATTTGAAGCGA
AGCCCTCCTGTAATGCTCAGTTTGAGTTAGAAAACGCCATTTTTGGTCTA
ACTCGTAGTAATCGGATTGGGCTTCATGTAAAGCAAAAAAAAAATTCAAA
AGTGAGTCTTTCCAGCGAGATTTTAAGCTAAAAAGCCTAAAAAATGCTAA
AATGTGACAAAAATCCACAACAGTTTTGCTCAAAAATAAAATAACTACAA
CATAGAANTGACAAAAATCCACAAAAGTTTTGCTCAAAAATAAATTATAA
ACATTAAATAACTACAACATACTGAGCTAAACTTTCTGACTTCTTTTTTT
AACAGCATGTTCTGATAAAGTCACTGATTGTCAAAAAAACATCCAAGGTT
GTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAAGAAACATTGCCAA
AAATCTTGCGGATTCTGTCGCTAAATAATGGCGCCCGATGCATATTATGA
AAACATTGTATGTTATACATAATAGCATAATATGAGAATGTAATATGGTA
TTATTTACATTAAATCATTAATTATTAAGAGATTTACGAGAATATACAGA
AAGAAATA

Coding sequence (CDS) from alignment at scaffold_77:529960..536817-

>TCONS_00072452 ID=TCONS_00072452|Name=TCONS_00072452|organism=Clytia hemisphaerica|type=CDS|length=8154bp|location=Sequence derived from alignment at scaffold_77:529960..536817- (Clytia hemisphaerica)
CATGTTCTGATAAAGTCACTGATTGTCAAAAAAACATCCAAGGTTGTCGA
AGCTGGGGTCAAGCTTGGATTGACTACATGAAGAAACATTGCCAAAAATC
TTGCGGATTCTGTCGCTAACTACCAAAATCGTATCGGCAACAGAGGTGGA
TTCAGTACTATCGATAAGCGACAAATCAACTTAATGTATTGTGGCGGTTC
AGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAAACGGAGGCGGTTCTG
GATGAACTCCATACGATTTTGATTCCATCATGCATTATGGACCATATGCT
TTCGCAAGAAGTCGTGGTTTAATCACTATCAAAACTTTAGATCCAAAGTC
TTTACCACGAACAATCACGACCAGATCGTGATAACCACGTTAGAATCCAA
ACACAAAACATCATCTCTGGCATGGCTTACAACTTCAACAAACAACGATC
ATCAAATATCGACTCCAAAGGTGTCGTCATTCACGAGATCGGACACTCAA
TTGATGTTCATCACCAGTTGGATACAGATATGGACGTGTCAACTCCGTTT
CTTTGGCTTCTGGATGTTGGACGAAAGGTCGATCGGCCATTTCCGCTGCG
ATTAGTGATTACCACAGTTACACCTGTATCCGATTTCACCGAAGAACAAA
CGAACGAAGTTACATCAAATTCTACAAAGGACGAGGACCAAGAACTTTTC
CAAGGAGACATTGTTTTGGACCCTGATGAAGATGAACGTGGGTTGAACAA
AAACACTTTCGCCAGCATCAAAGGTGGACGTTGGCCAAACGCAAGAATCC
CTTATGTCATTGACGGAAGCATCAGCTCAAGAGATGATGAAGATTTTGTT
ACTTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAA
TGGAGACATGTTCTGATAAAGTCACTGATTGTCAAAAAAACATCCAAGGT
TGTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAAGAAACATTGCCA
AAAATCTTGCGGATTCTGTCGCTAACTACCAAAATCGTATCGGCAACAGA
GGTGGATTCAGTACTATCGATAAGCGACAAATCAACTTAATGTATTGTGG
CGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAAACGGAGGCG
GTTCTGGATGAACTCCATACGATTTTGATTCCATCATGCATTATGGACCA
TATGCTTTCGCAAGAAGTCGTGGTTTAATCACTATCAAAACTTTAGATCC
AAAGTCTTTACCACGAACAATCACGACCAGATCGTGATAACCACGTTAGA
ATCCAAACACAAAACATCATCTCTGGCATGGCTTACAACTTCAACAAACA
ACGATCATCAAATATCGACTCCAAAGGTGTCGTCATTCACGAGATCGGAC
ACTCAATTGATGTTCATCACCAGTTGGATACAGATATGGACGTGTCAACT
CCGTTTCTTTGGCTTCTGGATGTTGGACGAAAGGTCGATCGGCCATTTCC
GCTGCGATTAGTGATTACCACAGTTACACCTGTATCCGATTTCACCGAAG
AACAAACGAACGAAGTTACATCAAATTCTACAAAGGACGAGGACCAAGAA
CTTTTCCAAGGAGACATTGTTTTGGACCCTGATGAAGATGAACGTGGGTT
GAACAAAAACACTTTCGCCAGCATCAAAGGTGGACGTTGGCCAAACGCAA
GAATCCCTTATGTCATTGACGGAAGCATCAGCTCAAGAGATGATGAAGAT
TTTGTTACTTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCA
AAGAAATGGAGACATGTTCTGATAAAGTCACTGATTGTCAAAAAAACATC
CAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAAGAAACA
TTGCCAAAAATCTTGCGGATTCTGTCGCTAACTACCAAAATCGTATCGGC
AACAGAGGTGGATTCAGTACTATCGATAAGCGACAAATCAACTTAATGTA
TTGTGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAAACG
GAGGCGGTTCTGGATGAACTCCATACGATTTTGATTCCATCATGCATTAT
GGACCATATGCTTTCGCAAGAAGTCGTGGTTTAATCACTATCAAAACTTT
AGATCCAAAGTCTTTACCACGAACAATCACGACCAGATCGTGATAACCAC
GTTAGAATCCAAACACAAAACATCATCTCTGGCATGGCTTACAACTTCAA
CAAACAACGATCATCAAATATCGACTCCAAAGGTGTCGTCATTCACGAGA
TCGGACACTCAATTGATGTTCATCACCAGTTGGATACAGATATGGACGTG
TCAACTCCGTTTCTTTGGCTTCTGGATGTTGGACGAAAGGTCGATCGGCC
ATTTCCGCTGCGATTAGTGATTACCACAGTTACACCTGTATCCGATTTCA
CCGAAGAACAAACGAACGAAGTTACATCAAATTCTACAAAGGACGAGGAC
CAAGAACTTTTCCAAGGAGACATTGTTTTGGACCCTGATGAAGATGAACG
TGGGTTGAACAAAAACACTTTCGCCAGCATCAAAGGTGGACGTTGGCCAA
ACGCAAGAATCCCTTATGTCATTGACGGAAGCATCAGCTCAAGAGATGAT
GAAGATTTTGTTACTTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAAT
GGATCAAAGAAATGGAGACATGTTCTGATAAAGTCACTGATTGTCAAAAA
AACATCCAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAA
GAAACATTGCCAAAAATCTTGCGGATTCTGTCGCTAACTACCAAAATCGT
ATCGGCAACAGAGGTGGATTCAGTACTATCGATAAGCGACAAATCAACTT
AATGTATTGTGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTG
GAAACGGAGGCGGTTCTGGATGAACTCCATACGATTTTGATTCCATCATG
CATTATGGACCATATGCTTTCGCAAGAAGTCGTGGTTTAATCACTATCAA
AACTTTAGATCCAAAGTCTTTACCACGAACAATCACGACCAGATCGTGAT
AACCACGTTAGAATCCAAACACAAAACATCATCTCTGGCATGGCTTACAA
CTTCAACAAACAACGATCATCAAATATCGACTCCAAAGGTGTCGTCATTC
ACGAGATCGGACACTCAATTGATGTTCATCACCAGTTGGATACAGATATG
GACGTGTCAACTCCGTTTCTTTGGCTTCTGGATGTTGGACGAAAGGTCGA
TCGGCCATTTCCGCTGCGATTAGTGATTACCACAGTTACACCTGTATCCG
ATTTCACCGAAGAACAAACGAACGAAGTTACATCAAATTCTACAAAGGAC
GAGGACCAAGAACTTTTCCAAGGAGACATTGTTTTGGACCCTGATGAAGA
TGAACGTGGGTTGAACAAAAACACTTTCGCCAGCATCAAAGGTGGACGTT
GGCCAAACGCAAGAATCCCTTATGTCATTGACGGAAGCATCAGCTCAAGA
GATGATGAAGATTTTGTTACTTTTGGTAGTCTTTTCAGGCGTTGTTTTCT
CCGAATGGATCAAAGAAATGGAGACATGTTCTGATAAAGTCACTGATTGT
CAAAAAAACATCCAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTA
CATGAAGAAACATTGCCAAAAATCTTGCGGATTCTGTCGCTAACTACCAA
AATCGTATCGGCAACAGAGGTGGATTCAGTACTATCGATAAGCGACAAAT
CAACTTAATGTATTGTGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAA
ATGGTGGAAACGGAGGCGGTTCTGGATGAACTCCATACGATTTTGATTCC
ATCATGCATTATGGACCATATGCTTTCGCAAGAAGTCGTGGTTTAATCAC
TATCAAAACTTTAGATCCAAAGTCTTTACCACGAACAATCACGACCAGAT
CGTGATAACCACGTTAGAATCCAAACACAAAACATCATCTCTGGCATGGC
TTACAACTTCAACAAACAACGATCATCAAATATCGACTCCAAAGGTGTCG
TCATTCACGAGATCGGACACTCAATTGATGTTCATCACCAGTTGGATACA
GATATGGACGTGTCAACTCCGTTTCTTTGGCTTCTGGATGTTGGACGAAA
GGTCGATCGGCCATTTCCGCTGCGATTAGTGATTACCACAGTTACACCTG
TATCCGATTTCACCGAAGAACAAACGAACGAAGTTACATCAAATTCTACA
AAGGACGAGGACCAAGAACTTTTCCAAGGAGACATTGTTTTGGACCCTGA
TGAAGATGAACGTGGGTTGAACAAAAACACTTTCGCCAGCATCAAAGGTG
GACGTTGGCCAAACGCAAGAATCCCTTATGTCATTGACGGAAGCATCAGC
TCAAGAGATGATGAAGATTTTGTTACTTTTGGTAGTCTTTTCAGGCGTTG
TTTTCTCCGAATGGATCAAAGAAATGGAGACATGTTCTGATAAAGTCACT
GATTGTCAAAAAAACATCCAAGGTTGTCGAAGCTGGGGTCAAGCTTGGAT
TGACTACATGAAGAAACATTGCCAAAAATCTTGCGGATTCTGTCGCTAAC
TACCAAAATCGTATCGGCAACAGAGGTGGATTCAGTACTATCGATAAGCG
ACAAATCAACTTAATGTATTGTGGCGGTTCAGGCGGCAATGGCGGTAACG
GTGGAAATGGTGGAAACGGAGGCGGTTCTGGATGAACTCCATACGATTTT
GATTCCATCATGCATTATGGACCATATGCTTTCGCAAGAAGTCGTGGTTT
AATCACTATCAAAACTTTAGATCCAAAGTCTTTACCACGAACAATCACGA
CCAGATCGTGATAACCACGTTAGAATCCAAACACAAAACATCATCTCTGG
CATGGCTTACAACTTCAACAAACAACGATCATCAAATATCGACTCCAAAG
GTGTCGTCATTCACGAGATCGGACACTCAATTGATGTTCATCACCAGTTG
GATACAGATATGGACGTGTCAACTCCGTTTCTTTGGCTTCTGGATGTTGG
ACGAAAGGTCGATCGGCCATTTCCGCTGCGATTAGTGATTACCACAGTTA
CACCTGTATCCGATTTCACCGAAGAACAAACGAACGAAGTTACATCAAAT
TCTACAAAGGACGAGGACCAAGAACTTTTCCAAGGAGACATTGTTTTGGA
CCCTGATGAAGATGAACGTGGGTTGAACAAAAACACTTTCGCCAGCATCA
AAGGTGGACGTTGGCCAAACGCAAGAATCCCTTATGTCATTGACGGAAGC
ATCAGCTCAAGAGATGATGAAGATTTTGTTACTTTTGGTAGTCTTTTCAG
GCGTTGTTTTCTCCGAATGGATCAAAGAAATGGAGACATGTTCTGATAAA
GTCACTGATTGTCAAAAAAACATCCAAGGTTGTCGAAGCTGGGGTCAAGC
TTGGATTGACTACATGAAGAAACATTGCCAAAAATCTTGCGGATTCTGTC
GCTAACTACCAAAATCGTATCGGCAACAGAGGTGGATTCAGTACTATCGA
TAAGCGACAAATCAACTTAATGTATTGTGGCGGTTCAGGCGGCAATGGCG
GTAACGGTGGAAATGGTGGAAACGGAGGCGGTTCTGGATGAACTCCATAC
GATTTTGATTCCATCATGCATTATGGACCATATGCTTTCGCAAGAAGTCG
TGGTTTAATCACTATCAAAACTTTAGATCCAAAGTCTTTACCACGAACAA
TCACGACCAGATCGTGATAACCACGTTAGAATCCAAACACAAAACATCAT
CTCTGGCATGGCTTACAACTTCAACAAACAACGATCATCAAATATCGACT
CCAAAGGTGTCGTCATTCACGAGATCGGACACTCAATTGATGTTCATCAC
CAGTTGGATACAGATATGGACGTGTCAACTCCGTTTCTTTGGCTTCTGGA
TGTTGGACGAAAGGTCGATCGGCCATTTCCGCTGCGATTAGTGATTACCA
CAGTTACACCTGTATCCGATTTCACCGAAGAACAAACGAACGAAGTTACA
TCAAATTCTACAAAGGACGAGGACCAAGAACTTTTCCAAGGAGACATTGT
TTTGGACCCTGATGAAGATGAACGTGGGTTGAACAAAAACACTTTCGCCA
GCATCAAAGGTGGACGTTGGCCAAACGCAAGAATCCCTTATGTCATTGAC
GGAAGCATCAGCTCAAGAGATGATGAAGATTTTGTTACTTTTGGTAGTCT
TTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAATGGAGACATGTTCT
GATAAAGTCACTGATTGTCAAAAAAACATCCAAGGTTGTCGAAGCTGGGG
TCAAGCTTGGATTGACTACATGAAGAAACATTGCCAAAAATCTTGCGGAT
TCTGTCGCTAACTACCAAAATCGTATCGGCAACAGAGGTGGATTCAGTAC
TATCGATAAGCGACAAATCAACTTAATGTATTGTGGCGGTTCAGGCGGCA
ATGGCGGTAACGGTGGAAATGGTGGAAACGGAGGCGGTTCTGGATGAACT
CCATACGATTTTGATTCCATCATGCATTATGGACCATATGCTTTCGCAAG
AAGTCGTGGTTTAATCACTATCAAAACTTTAGATCCAAAGTCTTTACCAC
GAACAATCACGACCAGATCGTGATAACCACGTTAGAATCCAAACACAAAA
CATCATCTCTGGCATGGCTTACAACTTCAACAAACAACGATCATCAAATA
TCGACTCCAAAGGTGTCGTCATTCACGAGATCGGACACTCAATTGATGTT
CATCACCAGTTGGATACAGATATGGACGTGTCAACTCCGTTTCTTTGGCT
TCTGGATGTTGGACGAAAGGTCGATCGGCCATTTCCGCTGCGATTAGTGA
TTACCACAGTTACACCTGTATCCGATTTCACCGAAGAACAAACGAACGAA
GTTACATCAAATTCTACAAAGGACGAGGACCAAGAACTTTTCCAAGGAGA
CATTGTTTTGGACCCTGATGAAGATGAACGTGGGTTGAACAAAAACACTT
TCGCCAGCATCAAAGGTGGACGTTGGCCAAACGCAAGAATCCCTTATGTC
ATTGACGGAAGCATCAGCTCAAGAGATGATGAAGATTTTGTTACTTTTGG
TAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAATGGAGACA
TGTTCTGATAAAGTCACTGATTGTCAAAAAAACATCCAAGGTTGTCGAAG
CTGGGGTCAAGCTTGGATTGACTACATGAAGAAACATTGCCAAAAATCTT
GCGGATTCTGTCGCTAACTACCAAAATCGTATCGGCAACAGAGGTGGATT
CAGTACTATCGATAAGCGACAAATCAACTTAATGTATTGTGGCGGTTCAG
GCGGCAATGGCGGTAACGGTGGAAATGGTGGAAACGGAGGCGGTTCTGGA
TGAACTCCATACGATTTTGATTCCATCATGCATTATGGACCATATGCTTT
CGCAAGAAGTCGTGGTTTAATCACTATCAAAACTTTAGATCCAAAGTCTT
TACCACGAACAATCACGACCAGATCGTGATAACCACGTTAGAATCCAAAC
ACAAAACATCATCTCTGGCATGGCTTACAACTTCAACAAACAACGATCAT
CAAATATCGACTCCAAAGGTGTCGTCATTCACGAGATCGGACACTCAATT
GATGTTCATCACCAGTTGGATACAGATATGGACGTGTCAACTCCGTTTCT
TTGGCTTCTGGATGTTGGACGAAAGGTCGATCGGCCATTTCCGCTGCGAT
TAGTGATTACCACAGTTACACCTGTATCCGATTTCACCGAAGAACAAACG
AACGAAGTTACATCAAATTCTACAAAGGACGAGGACCAAGAACTTTTCCA
AGGAGACATTGTTTTGGACCCTGATGAAGATGAACGTGGGTTGAACAAAA
ACACTTTCGCCAGCATCAAAGGTGGACGTTGGCCAAACGCAAGAATCCCT
TATGTCATTGACGGAAGCATCAGCTCAAGAGATGATGAAGATTTTGTTAC
TTTTGGTAGTCTTTTCAGGCGTTGTTTTCTCCGAATGGATCAAAGAAATG
GAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044964XLOC_044964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072452-exon-scaffold_77-1575043694:536614..536817TCONS_00072452-exon-scaffold_77-1575043694:536614..536817Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:535538..535684TCONS_00072452-exon-scaffold_77-1575043694:535538..535684Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:534718..534826TCONS_00072452-exon-scaffold_77-1575043694:534718..534826Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:533814..533887TCONS_00072452-exon-scaffold_77-1575043694:533814..533887Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:533369..533401TCONS_00072452-exon-scaffold_77-1575043694:533369..533401Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:532780..532902TCONS_00072452-exon-scaffold_77-1575043694:532780..532902Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:531728..531821TCONS_00072452-exon-scaffold_77-1575043694:531728..531821Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:531050..531183TCONS_00072452-exon-scaffold_77-1575043694:531050..531183Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1575043694:529960..530212TCONS_00072452-exon-scaffold_77-1575043694:529960..530212Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:536614..536817TCONS_00072452-exon-scaffold_77-1510915933:536614..536817Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:535538..535684TCONS_00072452-exon-scaffold_77-1510915933:535538..535684Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:534718..534826TCONS_00072452-exon-scaffold_77-1510915933:534718..534826Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:533814..533887TCONS_00072452-exon-scaffold_77-1510915933:533814..533887Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:533369..533401TCONS_00072452-exon-scaffold_77-1510915933:533369..533401Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:532780..532902TCONS_00072452-exon-scaffold_77-1510915933:532780..532902Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:531728..531821TCONS_00072452-exon-scaffold_77-1510915933:531728..531821Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:531050..531183TCONS_00072452-exon-scaffold_77-1510915933:531050..531183Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1510915933:529960..530212TCONS_00072452-exon-scaffold_77-1510915933:529960..530212Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:536614..536817TCONS_00072452-exon-scaffold_77-1491911889:536614..536817Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:535538..535684TCONS_00072452-exon-scaffold_77-1491911889:535538..535684Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:534718..534826TCONS_00072452-exon-scaffold_77-1491911889:534718..534826Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:533814..533887TCONS_00072452-exon-scaffold_77-1491911889:533814..533887Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:533369..533401TCONS_00072452-exon-scaffold_77-1491911889:533369..533401Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:532780..532902TCONS_00072452-exon-scaffold_77-1491911889:532780..532902Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:531728..531821TCONS_00072452-exon-scaffold_77-1491911889:531728..531821Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:531050..531183TCONS_00072452-exon-scaffold_77-1491911889:531050..531183Clytia hemisphaericaexon
TCONS_00072452-exon-scaffold_77-1491911889:529960..530212TCONS_00072452-exon-scaffold_77-1491911889:529960..530212Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072452-proteinTCONS_00072452-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:529960..536817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0994672	0.0288161	0.0695309	0.032547	0.0155387	0.0192472	0.0560453	0.0180091	209.903	233.639	49.505	123.759	41.9151	46.8634	1891.66	2065.72	264.057	265.291	334.516	300.741	396.806	340.005	0	0.0269841	0.0300134	0.187669
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR006026Peptidase_Metallo
IPR003582ShKT_dom
IPR024079MetalloPept_cat_dom
IPR034035Astacin-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
GO:0008270zinc ion binding
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
molecular_function GO:0008270 zinc ion binding
Blast
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BLAST of TCONS_00072452 vs. Swiss-Prot (Human)
Match: MEP1A (Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.861e-33
Identity = 82/219 (37.44%), Postives = 118/219 (53.88%), Query Frame = 3 
Query:  210 ELFQGDIVLDPDEDERGLNKNTFASIKGGRWPNAR----IPYVXXXXXXXXXXXXXXXXXXXYHSYTCIRFHRRTNERSYIKFYKGRGCSSPVGYRYGRVNSVSLASGCWTKGVVIHEIGHSIGLYHEQSRPDRDNHVRIQTQNIISGMAYNFNKQRSSNIDSKGTPYDFDSIMHYGPYAFARSRGLITIKTLDPNYQNRIGNRGGFSTIDKRQINLMY 854
            +LFQGDI+L               S  G R PN R    IPY++  ++    + AI  A   +   +C+ F     E SYI F +  GC S VG ++   N +S+  GC  K ++ HEI H++G YHEQSR DRD++V I    I+SG  +NF+    S I    TPYD++S+MHY P++F ++  + TI    P + + IG R  FS ID  ++N MY
Sbjct:   53 DLFQGDILLQ-------------KSRNGLRDPNTRWTFPIPYILADNLGLNAKGAILYAFEMFRLKSCVDFKPYEGESSYIIFQQFDGCWSEVGDQHVGQN-ISIGQGCAYKAIIEHEILHALGFYHEQSRTDRDDYVNIWWDQILSGYQHNFDTYDDSLITDLNTPYDYESLMHYQPFSFNKNASVPTITAKIPEFNSIIGQRLDFSAIDLERLNRMY 257
The following BLAST results are available for this feature:
BLAST of TCONS_00072452 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEP1A2.861e-3337.44Meprin A subunit alpha OS=Homo sapiens GN=MEP1A PE... [more]
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