TCONS_00072450 (transcript) - C. hemisphaerica

Overview
NameTCONS_00072450
Unique NameTCONS_00072450
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length515

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00072450 ID=TCONS_00072450|Name=TCONS_00072450|organism=Clytia hemisphaerica|type=transcript|length=515bp
AACAAACAACGATCATCAAATATCGACTCCAAAGGAACTCCATACGATTT
TGATTCCATCATGCATTATGGACCATATGCTTTCGCAAGAAGTCGTGGTT
TAATCACTATCAAAACTTTAGATCCAAAcTACCAAAATCGTATCGGCAAC
AGAGGTGGATTCAGTACTATCGATAAGCGACAAATCAACTTAATGTATTG
TGGCGGTTCAGGCGGCAATGGCGGTAACGGTGGAAATGGTGGAAACGGAG
GCGGTTCTGGATCATGTTCTGATAAAGTCACTGATTGTCAAAAAAACATC
CAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTACATGAAGAAACA
TTGCCAAAAATCTTGCGGATTCTGTCGCTAAATAATGGCGCCCGATGCAT
ATTATGAAAACATTGTATGTTATACATAATAGCATAATATGAGAATGTAA
TATGGTATTATTTACATTAAATCATTAATTATTAAGAGATTTACGAGAAT
ATACAGAAAGAAATA
Run BLAST on NCBI

transcript from alignment at scaffold_77:529960..532735-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00072450 ID=TCONS_00072450|Name=TCONS_00072450|organism=Clytia hemisphaerica|type=transcript|length=2776bp|location=Sequence derived from alignment at scaffold_77:529960..532735- (Clytia hemisphaerica)
AACAAACAACGATCATCAAATATCGACTCCAAAGGTTTGTACACGTTTTT
TTTTATAAGAACAAACTATATCAGAACATCATCAGGCTTCGACGGCCAAA
ATTTTAAGAACAAGTTAAGAACATTTAAAAGCTTTGCGAACCATAGAACA
CATGAATTTCTTCTAAGATAATTACTCATAAAATGGTGAAATTAGGACAT
TTTAAGAAAATTTTTAGGCTTAAAACTCGAAAAATTAAGAACATCCAACA
GACTCAAAAATTTTGGATGTTCTTATAAATAAACATAAATCAAAGTTAAA
TCATCAAAGAAGGTCAAACAAAGGCATCCTTAAGGGCGGAACATGAACCC
GCACCCTAAATTTTACTGAACACAAACCCCGGTCATAGAATGCCAAAAAT
GCTGAAAGTCATTTTACAATAAAAGCACTTCATATTGGAAGTCTATCGTG
GCTTGGATCACGAGATTTACGTTTGGCTAGATTTCGAGAGATTCTTCTCT
CTTCATCGGGTAAGGTGGGGGATGTTTTCTTCACTATTTGTACTAAAACC
GTCCTTACAAGGCCCCCCCCCTTGTAAGGAACGTTTTAGTACAAATAGTG
AAGAAAACATGCAGGGGTTCGAAATATCATTTTCCCGATAATATTTTTGC
TGAATCCCAGAATCCCTAAAATTGAAAAAAAATAATAACACTGTCACACC
AGTTTGTAGGGGTTAAAATACCCGGCATAATGACTCAAAAAATAAGGCTA
AATACCGTCACCGTCTGATTTTAAAATACCGTTTTTTCGTCACTTTTTTC
GTCAAATTCCGTAACACCGTAATAAAAAAGGGCTAATCCCGTCACGATGT
AAAAGTATAAGGTGTGAATCTCCTTGTTATCAAAGGTAAACCATTACTTT
CTTCTTCGTTATAGGAACTCCATACGATTTTGATTCCATCATGCATTATG
GACCATATGCTTTCGCAAGAAGTCGTGGTTTAATCACTATCAAAACTTTA
GATCCAAAGTATGTATTCTCCGATTTGAACAAGAAACTCGATTTTAGAAT
GGGCTCTTCTAGCAGAAAATGTCATGGGGGTAGAGGATATAGTGTCCGGG
GTAATGAAAAATCTACAAAATTTGCCCCGTCCGGGGGGTAAACTTGCTCT
GTTTGGGGGTAATTTTGTTCGGTTTGAGGGTTATTTTGAATGTCCAGGGT
GTCAACTGATGTATGTCCAGGTGGTCAGACCTGCTATCTGGGGGGTCAAA
AGTCACAAAATGTCCGGAGGGTAAATTTCTAAAACATGACATACCCTCCA
CCCCCTATATTCAATTTTTCTCTGGAAAAGCCTAATTTTGGAAACCTTAT
CAGTCCTTTATACGCCGAGCCTTATAGGCGTTATTTTTTCGTCGCTGCCG
TAATAAGTGCAAGAGACCGGAAATAAATTGGCCCTAAATTGGGGCCAGGC
TGAGATTGGAAAAAAAATCCTAAAATCTTTTGAAAATTAATAACTAGATA
GGAGGACTTTTGAGTAGAATATCTTAACTTTTATTTATTTTGTAATTTTA
AGCTACCAAAATCGTATCGGCAACAGAGGTGGATTCAGTACTATCGATAA
GCGACAAATCAACTTAATGTATTGTGGCGGTTCAGGCGGCAATGGCGGTA
ACGGTGGAAATGGTGGAAACGGAGGCGGTTCTGGATGTAAGTAACCAATC
ACATTATTTGTTTCAATCTTTTCGAATAATCAGATTGTATATTCCAAATT
TTGAACCAGTTAGATTACACGTTTCCAAATTTTTGACCAATCACATTGTT
TGTTTCAATATTTTGACCAATCAGATTGCACGTTTCTAAATGTTTGACCA
ATCACGTTGCTAAGAATCTACAGACTAGGTGTCTGCTTTAAGCTTTTCCT
AGCATAAAAAGTGATTATCGCAAAAAAGTTGTTCTTGCTATTGTTTTTGA
AAATCCGGGAAGGGCTGAAATTCTATTATTTAATGTCACGTGACCTAGGT
AAGATTTCACGGTACACCTTTCGTCAAAGCAAACCACCAACTAGGCCTTC
AGGCTTTTACACCAATCTGTGATCTATGATATCTTTTTCGAAAGAATGGA
TTTTAGTACTAAGTGACTAATAAAAAATATCGAACACGAAAATTTTGTTC
AAAAATAAATGATTAAACATATTTTAGGTTAACCCTTTCCGTGCCCATGT
CAAGTGTATTTGAAGCGAAGCCCTCCTGTAATGCTCAGTTTGAGTTAGAA
AACGCCATTTTTGGTCTAACTCGTAGTAATCGGATTGGGCTTCATGTAAA
GCAAAAAAAAAATTCAAAAGTGAGTCTTTCCAGCGAGATTTTAAGCTAAA
AAGCCTAAAAAATGCTAAAATGTGACAAAAATCCACAACAGTTTTGCTCA
AAAATAAAATAACTACAACATAGAANTGACAAAAATCCACAAAAGTTTTG
CTCAAAAATAAATTATAAACATTAAATAACTACAACATACTGAGCTAAAC
TTTCTGACTTCTTTTTTTAACAGCATGTTCTGATAAAGTCACTGATTGTC
AAAAAAACATCCAAGGTTGTCGAAGCTGGGGTCAAGCTTGGATTGACTAC
ATGAAGAAACATTGCCAAAAATCTTGCGGATTCTGTCGCTAAATAATGGC
GCCCGATGCATATTATGAAAACATTGTATGTTATACATAATAGCATAATA
TGAGAATGTAATATGGTATTATTTACATTAAATCATTAATTATTAAGAGA
TTTACGAGAATATACAGAAAGAAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_044964XLOC_044964Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00072450-exon-scaffold_77-1575043694:532702..532735TCONS_00072450-exon-scaffold_77-1575043694:532702..532735Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1575043694:531728..531821TCONS_00072450-exon-scaffold_77-1575043694:531728..531821Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1575043694:531050..531183TCONS_00072450-exon-scaffold_77-1575043694:531050..531183Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1575043694:529960..530212TCONS_00072450-exon-scaffold_77-1575043694:529960..530212Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1510915933:532702..532735TCONS_00072450-exon-scaffold_77-1510915933:532702..532735Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1510915933:531728..531821TCONS_00072450-exon-scaffold_77-1510915933:531728..531821Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1510915933:531050..531183TCONS_00072450-exon-scaffold_77-1510915933:531050..531183Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1510915933:529960..530212TCONS_00072450-exon-scaffold_77-1510915933:529960..530212Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1491911889:532702..532735TCONS_00072450-exon-scaffold_77-1491911889:532702..532735Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1491911889:531728..531821TCONS_00072450-exon-scaffold_77-1491911889:531728..531821Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1491911889:531050..531183TCONS_00072450-exon-scaffold_77-1491911889:531050..531183Clytia hemisphaericaexon
TCONS_00072450-exon-scaffold_77-1491911889:529960..530212TCONS_00072450-exon-scaffold_77-1491911889:529960..530212Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_77supercontigscaffold_77:529960..532735 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.0659192	0.0099979	0.493097	0	0	0	0.35006	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0.068658	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00072450 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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