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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00072447 ID=TCONS_00072447|Name=TCONS_00072447|organism=Clytia hemisphaerica|type=transcript|length=3597bpRun BLAST on NCBI transcript from alignment at scaffold_77:449875..478674- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00072447 ID=TCONS_00072447|Name=TCONS_00072447|organism=Clytia hemisphaerica|type=transcript|length=28800bp|location=Sequence derived from alignment at scaffold_77:449875..478674- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00072447 vs. Swiss-Prot (Human)
Match: LOXH1 (Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=2 SV=3) HSP 1 Score: 103.219 bits (256), Expect = 6.388e-22 Identity = 54/177 (30.51%), Postives = 89/177 (50.28%), Query Frame = 2
Query: 2 IRLGHDDDGVSLGWHLQNIILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFME--YSFTCQKWLKETK 526
IR+ HD GWHL+ + L N D+Y F N WL + DD EI++E A + R + Y V T + + D+N+++ +FG+ GDTG+R L N N F+ G D F I+++++ + ++ I +D G S L+++ ++E F C +WL + K
Sbjct: 211 IRVWHDKRSSGSGWHLERMTLMNTLNKDKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGEL--EGAGTDANVYLCLFGDVGDTGERLLYNCRNNTDLFEKGNADEFTIESVTMRNVRRVRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDK 385 HSP 2 Score: 97.0561 bits (240), Expect = 5.154e-20 Identity = 53/148 (35.81%), Postives = 84/148 (56.76%), Query Frame = 2
Query: 74 ETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGER-GDTGKRQLINRSQNKTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 514
E +++ FE + WL+R +D E++ E A E TY+VQ T + + D+N+++ I+GE GDTG+R L +S F+ GQ D F I AI LG + KI I +DN+G + L++I I ++++ + Y F CQ+WL
Sbjct: 707 EVIEQHKFEAHRWLARGKEDNELVVELVPAGKPGPER---NTYEVQVVTGNV--PKAGTDANVYLTIYGEEYGDTGERPL-KKSDKSNKFEQGQTDTFTIYAIDLGALTKIRIRHDNTGNRAGWFLDRIDITDMNNEITYYFPCQRWL 848 HSP 3 Score: 90.5077 bits (223), Expect = 4.595e-18 Identity = 59/196 (30.10%), Postives = 99/196 (50.51%), Query Frame = 2
Query: 2 IRLGHDDDGVSLGWHLQNI----ILTNLETNDEYLFEVNTWLSRDHDDGEIIKEFAA----------------AQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQNKTH-FKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWLKETK 526
IR+GH++ G++ GWH ++ +L + + + F + WL+ DD + I+E E L V Y VQ +T + D+ ++I I+G+ GDTG+R L +S+N+T+ F+ G D F I+A LG I KI++ +DNS + +EK++I ++ E+ F C +WL K
Sbjct: 1098 IRIGHNNTGMNPGWHCSHVDIRRLLPDKDGAETLTFPCDRWLATSEDDKKTIRELVPYDIFTEKYMKDGSLRQVYKEVEEPLDIVLYSVQIFTGNI--PGAGTDAKVYITIYGDLGDTGERYL-GKSENRTNKFERGTADTFIIEAADLGVIYKIKLRHDNSKWCADWYVEKVEIWNDTNEDEFLFLCGRWLSLKK 1290 HSP 4 Score: 87.8113 bits (216), Expect = 3.027e-17 Identity = 48/174 (27.59%), Postives = 92/174 (52.87%), Query Frame = 2
Query: 2 IRLGHDDDGVSLGWHLQNIILT--NLETNDEYLFEVNTWLSRDHDDGEIIKEFAAAQDSAREALKTVTYQVQTYTSDQMDKQRDMDSNIFINIFGERGDTGKRQLINRSQN-KTHFKSGQEDVFQIKAISLGPIEKIEITNDNSGENSALLLEKIKIKEISSFMEYSFTCQKWL 514
+R+ HD G GW+L +++ +D F WL +D DDG++++E + SA LK Y + T D DS ++I ++G++ DT K+ L+ N K +F+ G+ D F ++ +++G I ++ I +D++G +++ L ++I+ +Y+F +WL
Sbjct: 342 VRIRHDGKGSGSGWYLDRVLVREEGQPESDNVEFPCLRWLDKDKDDGQLVRELLPSDSSA--TLKNFRYHISLKTGDVSGAS--TDSRVYIKLYGDKSDTIKQVLLVSDNNLKDYFERGRVDEFTLETLNIGNINRLVIGHDSTGMHASWFLGSVQIRVPRQGKQYTFPANRWL 511 HSP 5 Score: 86.6557 bits (213), Expect = 6.053e-17 Identity = 57/179 (31.84%), Postives = 94/179 (52.51%), Query Frame = 2
Query: 2963 LKEFNWKVLVSTGNDDDAGTSSNVSIMLFGSKGQSEYKVLGLPDRKSGMTFQRGKTKVFDIKTQNIGKLKKIRVMHDQSGKEPDWKLRKLTLENKNSQAKNTKFILPCNRWLSEKEGDHSTVREI----PVDHKKTPVSLYRIHVETGDMENETIDPKLFVDLH---GTEGEXIEYTSR 3478
LK+F W + V T + AGT+S + I ++G KG+++ ++L P+ K F+ G + F I+ ++G+ KIRV HD+ W L ++TL N ++ K+ CNRWL E D+ VRE+ P + ++ Y + V TG++E D +++ L G GE + Y R
Sbjct: 144 LKKFPWSLWVWTTDLKKAGTNSPIFIQIYGQKGRTD-EILLNPNNKW---FKPGIIEKFRIELPDLGRFYKIRVWHDKRSSGSGWHLERMTLMNTLNK---DKYNFNCNRWLDANEDDNEIVREMTAEGPTVRRIMGMARYHVTVCTGELEGAGTDANVYLCLFGDVGDTGERLLYNCR 315 The following BLAST results are available for this feature:
BLAST of TCONS_00072447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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